View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4870_low_5 (Length: 411)
Name: NF4870_low_5
Description: NF4870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4870_low_5 |
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| [»] scaffold0386 (2 HSPs) |
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Alignment Details
Target: scaffold0386 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 3886 - 3502
Alignment:
| Q |
18 |
agcactaactattgacttagatctagttacactcttgaattaaacaacttgctttagagatatcagggtgattaaaacattcaataaaaccttcgatggt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3886 |
agcactaactattgacttagatctagttacactcttgaattaaacaagttgctttagagatatcagggtgattaaaacattcaataaaaccttcgatggt |
3787 |
T |
|
| Q |
118 |
atgaactcacctaagagattagtgagttgtaatgcaagaagagggctctagtcaaacgattgatcagagctgttttttaattatagtgaaactaaattaa |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3786 |
atgaactcacctaagagattagtgagttgtaatgcaagaagagggctctagtcaaaagattgatcagagctgttttttaattatagtgaaactagattaa |
3687 |
T |
|
| Q |
218 |
taattattaagtttaggtgtagtttaccaattgacggatataggattatttaaaagacatgatannnnnnncttctaaaaatctttatgaatctatttac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
3686 |
taattattaagtttaggtgtagtttaccaattgacggatataggattattcaaaagacatgatatttttttcttttaaaaatctttatgaatctatttac |
3587 |
T |
|
| Q |
318 |
attttgctatgtatgttatgaatgttaaataaactatatgcattgtgcaaccccgcaattttaaaatatccgtgttgatgatgtc |
402 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3586 |
attttgctatgtatgttatgaatgttaaataaactatatgcattgtgcaaccccgcaattttaaaatatccgtgttgataatgtc |
3502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 402
Target Start/End: Complemental strand, 15031 - 14941
Alignment:
| Q |
312 |
atttacattttgctatgtatgttatgaatgttaaataaactatatgcattgtgcaaccccgcaattttaaaatatccgtgttgatgatgtc |
402 |
Q |
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|||||| ||||||||| || |||||| ||||||| ||||||| ||| |||||||||||| |||||||| | ||| |||||||| ||||| |
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| T |
15031 |
atttactttttgctatttaatttatgattgttaaagaaactatttgccttgtgcaacccccaaattttaatacatctgtgttgattatgtc |
14941 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 137 - 402
Target Start/End: Original strand, 18536961 - 18537226
Alignment:
| Q |
137 |
tagtgagttgtaatgcaagaagagggctctagtcaaacgattgatcagagctgttttttaattatagtgaaactaaattaataattattaagtttaggtg |
236 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
18536961 |
tagtgagttgtaatgcaagaagagggctccagtcaaaagattgatcagagctgttttttaattatagtgaaactagattaataattattggatttaggtg |
18537060 |
T |
|
| Q |
237 |
tagtttacca---attgacggatataggattatttaaaagacatgat-annnnnnncttctaaaaatctttatgaatctatttacattttgctatgtatg |
332 |
Q |
| |
|
||||||||| ||||||||||||||| ||| |||||| ||||| | ||||||||| || ||| ||||||||||||||||||||||||||| |
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| T |
18537061 |
cagtttaccaaacattgacggatatagg---attcaaaagatatgatcatttttttcttctaaaattcattacgaatctatttacattttgctatgtatg |
18537157 |
T |
|
| Q |
333 |
ttatgaatgttaaataaactatatgcattgtgcaaccccgcaattttaaaatatccgtgttgatgatgtc |
402 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| |
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| T |
18537158 |
ttatgaatgttaaataaactatatgcattgtccaaccccgcaatttt-aaatatccgtgttgataatgtc |
18537226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 18536872 - 18536947
Alignment:
| Q |
18 |
agcactaactattgacttagatctagttacactcttgaattaaacaacttgctttagagatatcagggtgattaaa |
93 |
Q |
| |
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|||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18536872 |
agcactaactattgacttagatctagttactctattgaattaaacaaattgctttagagatatcagggtgattaaa |
18536947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 95 - 247
Target Start/End: Original strand, 18549472 - 18549626
Alignment:
| Q |
95 |
cattcaataaaaccttcgatggtatgaactcacctaagagattagtgagttgtaatgcaagaagagggctct-agtcaaacgattgatcagagctgtttt |
193 |
Q |
| |
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||||||||||||||||| ||| || ||||||||||||||||||||||||||||| ||| |||||||||| |||||| ||||||||| |||| |||| |
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|
| T |
18549472 |
cattcaataaaaccttcaatgttacatactcacctaagagattagtgagttgtaatctaaggagagggctctgagtcaagagattgatcaaagctatttt |
18549571 |
T |
|
| Q |
194 |
-ttaattatagtgaaactaaattaataattattaagtttaggtgtagtttaccaa |
247 |
Q |
| |
|
||||| ||| |||| ||| | |||||||| | ||||| ||| |||||||||| |
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| T |
18549572 |
gttaatgataatgaagctagaataataattgtagggtttaagtgcagtttaccaa |
18549626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 264
Target Start/End: Original strand, 18548460 - 18548635
Alignment:
| Q |
94 |
acattcaataaaaccttcgatggtatgaactcacctaagagattagtgagttgtaatgcaagaagagggctct-agtcaaacgattgatcagagct-gtt |
191 |
Q |
| |
|
|||||||||||||| ||||||| || || ||||||||||||||||||||| || |||||||||| ||| |||||| |||||||||||| || |
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|
| T |
18548460 |
acattcaataaaacattcgatgttacagacaatcctaagagattagtgagttgttatctaagaagagggatctgagtcaagatgttgatcagagctattt |
18548559 |
T |
|
| Q |
192 |
ttttaattatagtgaaactaaattaataattattaagtttaggtgtagtttacca---attgacggatataggatt |
264 |
Q |
| |
|
||||||||||| |||||||| | |||||| | | | ||||| || |||||||||| ||||||||||||| |||| |
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| T |
18548560 |
ttttaattataatgaaactagaataataactgtaaggtttaagtatagtttaccaaacattgacggatataagatt |
18548635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 18547356 - 18547417
Alignment:
| Q |
20 |
cactaactattgacttagatctagttacactcttgaattaaacaacttgctttagagatatc |
81 |
Q |
| |
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|||||||| |||||||||||||||||| |||||| ||| ||||| || | ||||||||||| |
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|
| T |
18547356 |
cactaactgttgacttagatctagttatactcttcaatcaaacatctaacattagagatatc |
18547417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 96 - 402
Target Start/End: Original strand, 5686742 - 5687054
Alignment:
| Q |
96 |
attcaataaaaccttcgatggtatgaactcacctaagagattagtgagttgtaatgcaagaagagggctctagtcaaacgattgatcagagctgttttt- |
194 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| |||||||||||||||||| |||| ||||||| || | |||||||| ||||||| |||||||||||| |
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|
| T |
5686742 |
attcaataaaaccttcgatgttatggactcatctaagagattagtgagttttaatctaagaagatggttttagtcaaaagattgattagagctgtttttc |
5686841 |
T |
|
| Q |
195 |
----taattatagtgaaactaaattaataattattaagtttaggtgtagtttaccaa---ttgacggatataggattatttaaaagacatgat-annnnn |
286 |
Q |
| |
|
|||||||| |||||||| | || ||||||| |||||||| |||||||||| |||||| |||||||||| |||||||||||| | |
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| T |
5686842 |
tttttaattataatgaaactagaagaacaattattggatttaggtgcagtttaccaaacattgacgaatataggattc---aaaagacatgatcattttt |
5686938 |
T |
|
| Q |
287 |
nncttctaaaaatctttatgaatctatttacattttgctatgtatgttatgaatgttaaataaactatatgcattgtgcaaccccgcaattttaaaatat |
386 |
Q |
| |
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|||||||||||| ||| ||||||||||||||||||||| |||||||||| ||||||| ||||||| |||||||||||||||||||||||||||| || |
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|
| T |
5686939 |
ttcttctaaaaatcattaccaatctatttacattttgctatttatgttatgattgttaaacaaactatctgcattgtgcaaccccgcaattttaaaacat |
5687038 |
T |
|
| Q |
387 |
ccgtgttgatgatgtc |
402 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
5687039 |
ccgtgttgataatgtc |
5687054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 5692767 - 5693170
Alignment:
| Q |
18 |
agcactaactattgacttagatctagttacactcttgaattaaacaacttgctttagagatatcag-------ggt---gattaaa-----acattcaat |
102 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||| ||||||| || ||||||||||||||||| ||| ||||||| | ||||||| |
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|
| T |
5692767 |
agcactaactattgatttagatctagtaacactcttcaattaaataagttgctttagagatatcaaccgaataggttttgattaaagattaatattcaat |
5692866 |
T |
|
| Q |
103 |
aaaaccttcgatggtatgaactcacctaagagattagtgagttgtaatgcaagaagagggctctagtcaaacgattgatcagagc-tgttttttaattat |
201 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| || || | |||||||| || |
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|
| T |
5692867 |
aaaaccttcgatgttatggactcacctaagagattagtgagtcgtaaactaagaagagggctctagtcaaaagattgattagggctttttttttaaaaat |
5692966 |
T |
|
| Q |
202 |
agt---gaaactaaattaataattattaagtttaggtgtagtttacca---attgacggatataggattatttaaaagacatga-tannnnnnncttcta |
294 |
Q |
| |
|
| | ||| || | || ||||||| ||||||||| ||||||||| ||||||||| ||||| ||| ||||||||||| || |||||| |
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|
| T |
5692967 |
atttaaaaaaatagaagaacaattattgggtttaggtgcagtttaccaaacattgacggaaatagg---attcaaaagacatgattaattttttcttcta |
5693063 |
T |
|
| Q |
295 |
aaaatctttatgaatctatttacattttgctatgtatgttatgaatgttaaataaactatatgcattgtgcaaccccgcaattttaaaatatccgtgttg |
394 |
Q |
| |
|
||| || | | ||||||||||||||||||||| | |||||||| ||| ||| ||| ||| |||||||||||| ||||||||||||||| ||| |||||| |
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|
| T |
5693064 |
aaattcatgacaaatctatttacattttgctatttgtgttatgattgtgaaacaaaatatttgcattgtgcaa-cccgcaattttaaaacatctgtgttg |
5693162 |
T |
|
| Q |
395 |
atgatgtc |
402 |
Q |
| |
|
|| ||||| |
|
|
| T |
5693163 |
ataatgtc |
5693170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 5693535 - 5693938
Alignment:
| Q |
18 |
agcactaactattgacttagatctagttacactcttgaattaaacaacttgctttagagatatcag-------ggt---gattaaa-----acattcaat |
102 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||| ||||||| || ||||||||||||||||| ||| ||||||| | ||||||| |
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|
| T |
5693535 |
agcactaactattgatttagatctagtaacactcttcaattaaataagttgctttagagatatcaaccgaataggttttgattaaagattaatattcaat |
5693634 |
T |
|
| Q |
103 |
aaaaccttcgatggtatgaactcacctaagagattagtgagttgtaatgcaagaagagggctctagtcaaacgattgatcagagc-tgttttttaattat |
201 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| || || | |||||||| || |
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|
| T |
5693635 |
aaaaccttcgatgttatggactcacctaagagattagtgagtcgtaaactaagaagagggctctagtcaagagattgattagggctttttttttaaaaat |
5693734 |
T |
|
| Q |
202 |
agt---gaaactaaattaataattattaagtttaggtgtagtttacca---attgacggatataggattatttaaaagacatga-tannnnnnncttcta |
294 |
Q |
| |
|
| | ||| || | || ||||||| ||||||||| ||||||||| ||||||||| ||||| ||| ||||||||||| || |||||| |
|
|
| T |
5693735 |
atttaaaaaaatagaagaacaattattgggtttaggtgcagtttaccaaacattgacggaaatagg---attcaaaagacatgattaattttttcttcta |
5693831 |
T |
|
| Q |
295 |
aaaatctttatgaatctatttacattttgctatgtatgttatgaatgttaaataaactatatgcattgtgcaaccccgcaattttaaaatatccgtgttg |
394 |
Q |
| |
|
||| || | | ||||||||||||||||||||| | |||||||| ||| ||| ||| ||| |||||||||||| ||||||||||||||| ||| |||||| |
|
|
| T |
5693832 |
aaattcatgacaaatctatttacattttgctatttgtgttatgattgtgaaacaaaatatttgcattgtgcaa-cccgcaattttaaaacatctgtgttg |
5693930 |
T |
|
| Q |
395 |
atgatgtc |
402 |
Q |
| |
|
|| ||||| |
|
|
| T |
5693931 |
ataatgtc |
5693938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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