View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4870_low_9 (Length: 263)
Name: NF4870_low_9
Description: NF4870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4870_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 39073033 - 39072845
Alignment:
| Q |
1 |
tttattgatttaatactgtaattaactaaaattctaccnnnnnnnnnnnctttaattagctaaaagagaagagggaataaacaataaaa-ggggttaatt |
99 |
Q |
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| T |
39073033 |
tttattgatttaatactttaattagctaaaattctaccaaaaaaaaaa-ctttaattagctaaaagataagagggaataaacaataaaaaggggttaatt |
39072935 |
T |
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| Q |
100 |
tgagatatttgatcaacnnnnnnn-gaacaacagaagaaatgaatattcaataaaacgagtataaaggatactcaaactcaaaagacgat |
188 |
Q |
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| T |
39072934 |
tgagatatttgatcaacttttttttgaacaacagaagaaatgaatattcaataaaacgaatataaatgatactcaaactcaaaagacgat |
39072845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 39072818 - 39072786
Alignment:
| Q |
215 |
atttttggatatgatcatttgaaatgaaacaac |
247 |
Q |
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| T |
39072818 |
atttttggatatgatcatatgaaatgaaacaac |
39072786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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