View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4871-Insertion-1 (Length: 1098)
Name: NF4871-Insertion-1
Description: NF4871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4871-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 841; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 841; E-Value: 0
Query Start/End: Original strand, 8 - 982
Target Start/End: Complemental strand, 42393246 - 42392266
Alignment:
| Q |
8 |
atgcactcgtttgattggacaatacctcaaggagaaaagttggatgtatcagagaaatatggtatcattctcaaaaagaagacacctttgcttgccatac |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393246 |
atgcactcgtttgattggacaatacctcaaggagaaaagttggatgtattagagaaatatggtatcattctcaaaaagaagacacctttgcttgccatac |
42393147 |
T |
|
| Q |
108 |
ctacaccacgactgtccaatccagatctttataaatagatttgggtactatattcactcttcatattacaatatagggtaattgatagggagggaaagtg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
42393146 |
ctacaccacgactgtccaatccagatctttataaatagatttggatactatattcactattcatattaccatatagggtaattgatagggagggaaagtg |
42393047 |
T |
|
| Q |
208 |
tcgtgtgtattctatgattgttgatgcttgaaaattgttcaaaacttcaatattgttaagaatagcaattcaatgagcttctacttacggagagcaccat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42393046 |
tcgtgtgtattctatgattgttgatgcttgaaaattgttcaaaacttcaatgttgttaagaatagcaattcaacgagcttctacttacggagagcaccat |
42392947 |
T |
|
| Q |
308 |
ttatcattgctggagtttttaacaattttcaagtatttgtctgacatacaccatatgagacacttctctaccctagaaaccacctatcatatgaatattg |
407 |
Q |
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| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42392946 |
tgatcattgctagagtttttaacaattttcaagtatttgtctaacatacaccatatgagacacttctctaccctagaaaccacctatcatatgaatattg |
42392847 |
T |
|
| Q |
408 |
atcaagggaatctagattcagcactcaatgctagtataatctcttgcgctttatgtatcgagtatttgtctgagcattttaattctctttcaaatgtttt |
507 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| |
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| T |
42392846 |
atcaagggaatctagattcagcgctcaatgctagtataatctcttgcgctttatgtatcaagtatttgtctgagcatattcattctctttcaaatgtttt |
42392747 |
T |
|
| Q |
508 |
caataaaaatatgtactccagttgtgtataatgctttgaatttgagataatctaaatagcttaaagtctgcaaaaacattattacatcaacatataaaat |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42392746 |
caataaaaatatgtactccagttgtgtataatgctttgaatttgagataatctaaatagcttaaagtctgcaaaaacattattacatcaacatataaaat |
42392647 |
T |
|
| Q |
608 |
cagaatgaatacttgtatttagatgtgtgctacttgaagtttagtctaaataatttatttagctacactaaataaaaatggaagagaaatttgttttcat |
707 |
Q |
| |
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|| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42392646 |
caaaatgaatacttgtatttagatgtgggctacttgaagtttagtctcaataatttatttagctacactaaataaaaatggaagagaaatttgttttcat |
42392547 |
T |
|
| Q |
708 |
ttgtctgaaaagtttgaagatgagccaattataactggtacttttcatgttaacatgcttctttttgatacatacggtgtattcttcagtcttaaaattt |
807 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||| |
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| T |
42392546 |
ttgtctgaaaagtttgaagatgagccaattataactggtacttttcatgttgacatgcttcttttcgatacatacagtgtattcttctgtcttaaaattt |
42392447 |
T |
|
| Q |
808 |
aagcacatatttaccttttaaaattcataaatattactcatttgaaatggccatgtgtattgttagtagtgttgcgggaaagaggttcatacc-aggtgt |
906 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
42392446 |
aagcacatatttaccttttaaaattcataaatattactcatttgaaatggccatgtgtattgttagcagtgttgcgggaaagaggttcataccaaggtgt |
42392347 |
T |
|
| Q |
907 |
tgagtgacctaat-gatatacttcttgttaagttg-tataacta-gagtgtgcat-gttcataaa-caaaccaaaccatat |
982 |
Q |
| |
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|||||||| |||| | ||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||||||| |
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| T |
42392346 |
tgagtgacgtaatggttatacttcttgttaagttgttataactaggagtgtgcatggttcataaatcaaaccaaaccatat |
42392266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 42376693 - 42376447
Alignment:
| Q |
9 |
tgcactcgtttgattggacaatacctcaaggagaaaagttggatgtatcagagaaatatggtatcattctcaaaaagaagacacctttgcttgccatacc |
108 |
Q |
| |
|
|||||| ||||||||||||| | |||||||||||||| |||| || || ||||||| |||||| |||| ||||||||||||||| ||||||||||||| |
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|
| T |
42376693 |
tgcacttgtttgattggacagttcctcaaggagaaaatctggaggtgtcggagaaatttggtattgttctaaaaaagaagacacctctgcttgccatacc |
42376594 |
T |
|
| Q |
109 |
tacaccacgactgtccaatccagatctttataaatagatttgggtactatattcactcttcatattacaatatagggtaattgatagggagggaaagtgt |
208 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||| | | || |||||||||| ||||||||| ||||| | ||||| |||| |||||||| |
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| T |
42376593 |
cacaccacgactgtcaaatccagatctttataaatagaatcgaatattatattcactattcatattatcatata-agcaattggtaggttgggaaagt-- |
42376497 |
T |
|
| Q |
209 |
cgtgtgtattctatgattgttgatgcttg-aaaattgttcaaaacttcaat |
258 |
Q |
| |
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|||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
42376496 |
-gtgtgtattctacgattgttgatgcttgtaaaattgttcaaaacttcaat |
42376447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 42387089 - 42386957
Alignment:
| Q |
9 |
tgcactcgtttgattggacaatacctcaaggagaaaagttggatgtatcagagaaatatggtatcattctcaaaaagaagacacctttgcttgccatacc |
108 |
Q |
| |
|
|||||| ||||||||||||| | |||||||||||||| |||||||||||||||||| ||||||| |||| ||||||||||| ||||||||||||||||| |
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| T |
42387089 |
tgcacttgtttgattggacagttcctcaaggagaaaatatggatgtatcagagaaatttggtatcgttctaaaaaagaagacgcctttgcttgccatacc |
42386990 |
T |
|
| Q |
109 |
tacaccacgactgtccaatccagatctttataa |
141 |
Q |
| |
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||| |||||||||| ||||||||||||||||| |
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| T |
42386989 |
cacaacacgactgtctaatccagatctttataa |
42386957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 579 - 742
Target Start/End: Complemental strand, 42386808 - 42386634
Alignment:
| Q |
579 |
aaaaacattattacatcaacatataaaatcagaatgaatacttgtatttagatgtgtgctacttgaagtttagtct-aaataatttatttagctacact- |
676 |
Q |
| |
|
|||||||||||||||| | || |||||||| ||||||| |||| ||| ||||||| ||||| | ||||||||| |||||||||||||||||||||| |
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|
| T |
42386808 |
aaaaacattattacattagcaaataaaatcggaatgaaaacttacattaagatgtggtttactttaggtttagtcttaaataatttatttagctacactg |
42386709 |
T |
|
| Q |
677 |
------aaat---aaaaatggaagagaaatttgttttcatttgtctgaaaagtttgaagatgagccaattataac |
742 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||| |||| ||||||||||| |||| |||||| |
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|
| T |
42386708 |
tataaaaaataagaaaaatggaagagaattttgttttcatttgtcgaaaaaatttgaagatgaaccaaatataac |
42386634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 431 - 575
Target Start/End: Complemental strand, 42376095 - 42375951
Alignment:
| Q |
431 |
ctcaatgctagtataatctcttgcgctttatgtatcgagtatttgtctgagcattttaattctctttcaaatgttttcaataaaaatatgtactccagtt |
530 |
Q |
| |
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||||||||| ||||||| |||| |||||||||| ||||| | |||||| || |||||||||||||||||||| || ||| ||| || ||||| |
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| T |
42376095 |
ctcaatgctgatataatcatttgctatttatgtatcaagtatattaatgagcaaattcattctctttcaaatgttttcgatcaaagtatttatctcagtt |
42375996 |
T |
|
| Q |
531 |
gtgtataatgctttgaatttgagataatctaaatagcttaaagtc |
575 |
Q |
| |
|
|| ||||||| |||||||||||||||| |||||| || ||||| |
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|
| T |
42375995 |
gtctataatgtgttgaatttgagataataaaaatagttttaagtc |
42375951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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