View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4871-Insertion-3 (Length: 1026)
Name: NF4871-Insertion-3
Description: NF4871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4871-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 883; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 883; E-Value: 0
Query Start/End: Original strand, 6 - 904
Target Start/End: Complemental strand, 11800849 - 11799951
Alignment:
| Q |
6 |
caatatccttctctagtaactctttcagtataagctttctgctcagttctgattcttcattccaccactcctgaaaatcaagctccaaccttcttcgttt |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11800849 |
caatatccttctctagtaactctttcagtataagctttctgctcagttctgattcttcattccaccactcctgaaaatcaagctccaacctttttcgttt |
11800750 |
T |
|
| Q |
106 |
ctgaacatttgcactccttgaagacatggcatcacgattctcatttaaaaatttgtcatacatcaaagacaaacattcaggtgaaatctgtaacctttca |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11800749 |
ctgaacatttgcactccttgaagacatggcatcacgattctcatttaaaaatttgtcatacatcaaagacaaacattcaggtgaaatctgtaacctttca |
11800650 |
T |
|
| Q |
206 |
tcatccacgatgccttctctatcaccattactttgcaatgaaaaatactgagaatcttttcggtgaattaatccatcaaccccatactcgtattgcccct |
305 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11800649 |
tcatccacgatgccttctctatcacaattactttgcaatgaaaaatactgagaatcttttcggtgaattaatccatcaaccccatactcgtattgcccct |
11800550 |
T |
|
| Q |
306 |
cctgtgttaagcactcatcaaccacatcagccaaatccaacccagtctgatcaacatccttcctcttctcaacaggcttcgacatagacttcttctccat |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11800549 |
cctgtgttaagcactcatcaaccacatcagccaaatccaacccagtctgatcaacatccttcctcttctcaacaggcttcgacatagacttcttctccat |
11800450 |
T |
|
| Q |
406 |
atactgaatcacaaatggcgcattcttaattatatttttcttcgtaatatctttcccccaaggcaacacttgcgcaacattgacaagcgtctcaagaagc |
505 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11800449 |
atactgaatcacaaacggcgcattcttaattatatttttcttcgtaatatctttcccccaaggcaacacttgcgcaacattgacaagcgtctcaagaagc |
11800350 |
T |
|
| Q |
506 |
tctctatacctagttctacaagtcgaaacaatagcatgaacctccttcgccaaatcctccaaccgaatatcaactccattaatctccgcaaccaaaacca |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11800349 |
tctctatacctagttctacaagtcgaaacaatagcatgaacctccttcgccaaatcctccaaccgaatatcaactccattaatctccgcaaccaaaacca |
11800250 |
T |
|
| Q |
606 |
aaaccgcaaccaccaaaggtaacggcctacgccccgtactcaaaaacaatttcacggcacattgcaacaaaaacaccccttgtttcttcattctatcaac |
705 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11800249 |
aaaccgcaaccaccaaaggtaacggcctacgccccgtactcaaaaacaatttcaccgcacattgcaacaaaaacaccccttgtttcttcattctatcaac |
11800150 |
T |
|
| Q |
706 |
caaactcctatcaacctccctaaaacaacgacaactatcaacactccttttcaacaaatgcacaatatcaaaatccggaaaatcactccctctcaaatcc |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11800149 |
caaactcctatcaacctccctaaaacaacgacaactatcaacactccttttcaacaaatgcacaatatcaaaatccggaaaatcactccctctcaaatcc |
11800050 |
T |
|
| Q |
806 |
aaataatcaacaaccctaataaccatcttcccaagctcaaaaacatcacaaccaacagcattcgcaacttcattcatggataaagcacgttcatctctc |
904 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11800049 |
aaataatcaacaaccctaataaccatcttcccaagctcaaaaacatcacaaccaacagcattcgcaacttcattcatggataaagcacgttcatctctc |
11799951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 911 - 1000
Target Start/End: Original strand, 35482401 - 35482492
Alignment:
| Q |
911 |
cgaggatgtcaatgcgacctgg-atgtcgaggttgtcgtattttgatggtagaggtgttggtggtggtcggaaagg-tggtataggtgtttc |
1000 |
Q |
| |
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|||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| |
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| T |
35482401 |
cgaggatgtcgatgcgacctgggatgtcgaggttgtcgtattttgatgggagaggtgttggtggtggtcggaaaggttggtatagttgtttc |
35482492 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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