View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4871-Insertion-4 (Length: 990)

Name: NF4871-Insertion-4
Description: NF4871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4871-Insertion-4
NF4871-Insertion-4
[»] chr3 (14 HSPs)
chr3 (8-831)||(43533211-43534032)
chr3 (831-990)||(43532989-43533149)
chr3 (577-831)||(43528929-43529200)
chr3 (835-956)||(43528739-43528863)
chr3 (666-783)||(43537658-43537777)
chr3 (675-778)||(43523220-43523325)
chr3 (835-904)||(43537478-43537549)
chr3 (493-557)||(43537860-43537924)
chr3 (605-666)||(43537796-43537855)
chr3 (432-470)||(43537949-43537987)
chr3 (955-990)||(43528670-43528705)
chr3 (11-82)||(43531668-43531739)
chr3 (955-990)||(43537356-43537391)
chr3 (835-894)||(43523046-43523107)
[»] scaffold0028 (1 HSPs)
scaffold0028 (589-646)||(18829-18886)
[»] chr5 (1 HSPs)
chr5 (589-646)||(22068418-22068475)


Alignment Details
Target: chr3 (Bit Score: 692; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 8 - 831
Target Start/End: Complemental strand, 43534032 - 43533211
Alignment:
Q  8 gataagagggtagttattcttgagtgattgtcttggtgacaaatctcatagcaaactaaataaagcgtgtaatgtcattgcgagcttaagtcgatccttg 107  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43534032 gataagagggtagttattcttgagtgattatcttggtgacaaatctcatagcaaactaaataaagcgtgtaatgtcattgcgagcttaagtcgatccttg 43533933  T
Q  108 ataagggattgttgtaccttatttgcatatatattttaaaaaagataaagatatgaatcaatttatatattcaattcaaagttatgtgagtagggttatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43533932 ataagggattgttgtaccttatttgcatatatattttaaaaaatataaagatatgagtcaatttatatattcaattcaaagttatgtgagtagggttatt 43533833  T
Q  208 atttattcattttacnnnnnnnnnnataattgtgtagctcatatttgttttccacgtagaaaatgaagtcttttgctgtatttgaacacctcgccattta 307  Q
    |||||||||||||||           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43533832 atttattcattttacttttttttt--taattgtgtagctcatatttgttttccacgtagaaaatga-gtcttttgctgtatttgaacacctcgccattta 43533736  T
Q  308 tgtagttgtatttttgtctgaattctttatattgtctgaatgcttagcatgatagcacgatatcataacaataaaaagtaacaccatggaagttactata 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43533735 tgtagttgtatttttgtctgaattctttatattgtctgaatgcttagcatgatagcacgatatcataacaataaaaagtaacaccatggaagttactata 43533636  T
Q  408 ttttgaatggaaattatggaagttactatatatttagcactttgccgtgaccccaaatcttacggtaatggctaggnnnnnnnnntgcttagcagactat 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  43533635 ttttgaatggaaattatggaagttactatatatttagcactttgccgtgaccccaaatcttacggtaatggctaggaaaaaaaaatgcttagcagactat 43533536  T
Q  508 agttgtactgattatatatacaaataaactttgcgcaagaagtcatgaagttcgtaatttatgaaacgaactactagatcgatcttaattagtgatcaag 607  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43533535 agttgcactgattatatatacaaataaactttgcgcaagaagtcatgaagttcgtaatttatgaaacgaactactagatcgatcttaattagtgatcaag 43533436  T
Q  608 tagtttgcttgaaaaataactaagcctattaagagataaggcatctaattaacagacatcatgcaatatcatgaaagttcataccctgtggaggatgtat 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43533435 tagtttgcttgaaaaataactaagcctattaagagataaggcatctaattaacagacatcatgcaatatcatgaaagttcataccctgtggaggatgtat 43533336  T
Q  708 ccagctctttctcttataaagtaattgtgatcatcggaacatgacgagtactccaaactgagcaagtaaaacacaacggnnnnnnnncaatcacactcat 807  Q
    |||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||        |||||||||||||    
T  43533335 ccagctctttctcttataaagtaattgtgatcatccaaacatgacgggtactccaaactgagcaagtaaaacacaacggaaaaaaaacaatcacactcat 43533236  T
Q  808 gcatatacataaatt-atttgacag 831  Q
    ||||||||||||||| |||||||||    
T  43533235 gcatatacataaattaatttgacag 43533211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 831 - 990
Target Start/End: Complemental strand, 43533149 - 43532989
Alignment:
Q  831 gtcggttatatcagttgatccaacatgagtgttctgatgaacaaacaatccttctctgaaacaagtagacagagtgatcacagtagc-aaacaagagaaa 929  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43533149 gtcggttatatcagttgatccaatatgagtgttctgatgaacaaacaatccttctctgaaacaagtagacagagtgatcacagtagcaaaacaagagaaa 43533050  T
Q  930 atgctaaccaattttctgcatagagattacagtcttatttattgcacgtcccattgctttg 990  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43533049 atgctaaccaattttctgcatagagattacagtcttatttattgcacgtcccattgctttg 43532989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 577 - 831
Target Start/End: Complemental strand, 43529200 - 43528929
Alignment:
Q  577 actactagatcgatcttaattagtgatcaagtagtttgcttgaaaaataactaagcctattaagagataaggcatctaatta------------------ 658  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      
T  43529200 actactaggtcgatcttaattagtgatcaagtagtttgcttgaaaaataactaagcctattaagagataaggcatctaattaacaagcataattttgaga 43529101  T
Q  659 -acagacatcatgcaatatcatgaaagttcataccctgtggaggatgtatccagctctttctcttataaagtaattgtgatcatcggaacatgacgagta 757  Q
     |||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||| | | ||||||||||| ||||||| |||||||||||||    
T  43529100 tacagatgtcatgcaatatcatgaaagttcataccctgtggacgatgtatccagctctttctttgacaaagtaattgtaatcatcgaaacatgacgagta 43529001  T
Q  758 --ctccaaactgag--caagtaaaacacaacggnnnnnnnncaatcacactcatgcatatacataaattatttgacag 831  Q
      ||||||||||||  ||||||||||||||||          ||||| ||||||||||||||||||||||||||||||    
T  43529000 gtctccaaactgagcacaagtaaaacacaacg------aaaaaatcatactcatgcatatacataaattatttgacag 43528929  T

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Target: chr3; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 835 - 956
Target Start/End: Complemental strand, 43528863 - 43528739
Alignment:
Q  835 gttatatcagttgatccaacatgagtgttctgatgaaca--aacaatccttctctgaaacaagtagacagagtgatcacagtagcaaa-caagagaaaat 931  Q
    |||||||||||||||||||| |||||||||||||||| |  ||||||||||||||||||||||||||||||| | ||||| ||||||| |||||||||||    
T  43528863 gttatatcagttgatccaacttgagtgttctgatgaagaccaacaatccttctctgaaacaagtagacagagcggtcacaatagcaaaacaagagaaaat 43528764  T
Q  932 gctaaccaattttctgcatagagat 956  Q
    || ||||||||||||||||||||||    
T  43528763 gccaaccaattttctgcatagagat 43528739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 666 - 783
Target Start/End: Complemental strand, 43537777 - 43537658
Alignment:
Q  666 tcatgcaatatcatgaaagttcataccctgtggaggatgtatccagctctttctcttataaagtaattgtgatcatcggaacatgacgagta--ctccaa 763  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | | |  |||||||||||||| | |||||||||||||  ||||||    
T  43537777 tcatgcaatatcatgaaagtccataccctgtggaggatgtatccagctctttctttgacagcgtaattgtgatcattgaaacatgacgagtagtctccaa 43537678  T
Q  764 actgagcaagtaaaacacaa 783  Q
    ||||||||||||||||||||    
T  43537677 actgagcaagtaaaacacaa 43537658  T

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Target: chr3; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 675 - 778
Target Start/End: Complemental strand, 43523325 - 43523220
Alignment:
Q  675 atcatgaaagttcataccctgtggaggatgtatccagctctttctcttataaagtaattgtgatcatcggaacatgacgagta--ctccaaactgagcaa 772  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| | |||||||||||||   ||||||||| ||||    
T  43523325 atcatgaaagttcataccctgtggaggatgtatccagctctttctttgacaaagtaattgtgatcattgaaacatgacgagtagtttccaaactgcgcaa 43523226  T
Q  773 gtaaaa 778  Q
    ||||||    
T  43523225 gtaaaa 43523220  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 835 - 904
Target Start/End: Complemental strand, 43537549 - 43537478
Alignment:
Q  835 gttatatcagttgatccaacatgagtgttctgatgaaca--aacaatccttctctgaaacaagtagacagag 904  Q
    |||||||||||||||||||  |||||||||||||| | |  |||||||||||||||||||||||||| ||||    
T  43537549 gttatatcagttgatccaatttgagtgttctgatgcagaccaacaatccttctctgaaacaagtagaaagag 43537478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 493 - 557
Target Start/End: Complemental strand, 43537924 - 43537860
Alignment:
Q  493 tgcttagcagactatagttgtactgattatatatacaaataaactttgcgcaagaagtcatgaag 557  Q
    ||||||| ||||||||| ||||||||||||| | ||||||||||||||| |||| ||||||||||    
T  43537924 tgcttagtagactatagctgtactgattataaaaacaaataaactttgcacaagtagtcatgaag 43537860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 605 - 666
Target Start/End: Complemental strand, 43537855 - 43537796
Alignment:
Q  605 aagtagtttgcttgaaaaataactaagcctattaagagataaggcatctaattaacagacat 666  Q
    |||||||||||||||||||  ||||||||||| |||||||||||||||| ||||||| ||||    
T  43537855 aagtagtttgcttgaaaaa--actaagcctatcaagagataaggcatctgattaacaaacat 43537796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 432 - 470
Target Start/End: Complemental strand, 43537987 - 43537949
Alignment:
Q  432 actatatatttagcactttgccgtgaccccaaatcttac 470  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43537987 actatatatttagcactttgccgtgaccccaaatcttac 43537949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 955 - 990
Target Start/End: Complemental strand, 43528705 - 43528670
Alignment:
Q  955 attacagtcttatttattgcacgtcccattgctttg 990  Q
    ||||||||||||||||||||||||||||||||||||    
T  43528705 attacagtcttatttattgcacgtcccattgctttg 43528670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 43531739 - 43531668
Alignment:
Q  11 aagagggtagttattcttgagtgattgtcttggtgacaaatctcatagcaaactaaataaagcgtgtaatgt 82  Q
    ||||||||| |||||||  ||||||| |||||| |||||||| |||||  |||||||||||| |||||||||    
T  43531739 aagagggtaattattctcaagtgattatcttggggacaaatcacatagtgaactaaataaagtgtgtaatgt 43531668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 955 - 990
Target Start/End: Complemental strand, 43537391 - 43537356
Alignment:
Q  955 attacagtcttatttattgcacgtcccattgctttg 990  Q
    ||||||||||||||||||||||||||||||||||||    
T  43537391 attacagtcttatttattgcacgtcccattgctttg 43537356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 835 - 894
Target Start/End: Complemental strand, 43523107 - 43523046
Alignment:
Q  835 gttatatcagttgatccaacatgagtgttctgatg--aacaaacaatccttctctgaaacaa 894  Q
    ||||||||||||||||||| |  ||||||||||||   || |||||||||||||||||||||    
T  43523107 gttatatcagttgatccaataatagtgttctgatgcagaccaacaatccttctctgaaacaa 43523046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 589 - 646
Target Start/End: Original strand, 18829 - 18886
Alignment:
Q  589 atcttaattagtgatcaagtagtttgcttgaaaaataactaagcctattaagagataa 646  Q
    ||||||| || | ||||| |||||||| | ||||||||||||||||||||| ||||||    
T  18829 atcttaactaattatcaactagtttgcattaaaaataactaagcctattaaaagataa 18886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 589 - 646
Target Start/End: Original strand, 22068418 - 22068475
Alignment:
Q  589 atcttaattagtgatcaagtagtttgcttgaaaaataactaagcctattaagagataa 646  Q
    ||||||| || | ||||| |||||||| | ||||||||||||||||||||| ||||||    
T  22068418 atcttaactaattatcaactagtttgcattaaaaataactaagcctattaaaagataa 22068475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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