View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4871-Insertion-5 (Length: 615)
Name: NF4871-Insertion-5
Description: NF4871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4871-Insertion-5 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] scaffold0501 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 536; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 8 - 615
Target Start/End: Original strand, 1903210 - 1903816
Alignment:
| Q |
8 |
ttaggaacattgttagtgagtaatgcaaaaatctcattccttttcatattggattatgttttcatccatttcttatcttatttataattttgtgtttgag |
107 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1903210 |
ttaggaacattgtgagtgagtaatgcaaaaatctcattccttttcatattggattatgttttcatccatttcttatcttatttatatttttgtgtttgat |
1903309 |
T |
|
| Q |
108 |
cttatcatgagctaaaatactgtatggttaagacttgatgaggttatgattatatttgcataaggttggttagttgcgtactcatgcttcttttaagcaa |
207 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1903310 |
cttatcttgagctaaaatactgtgtggttaagacatgatgaggttatgattatgtttgcata-ggttggttagttgcgtactcatgcttcttttaaacaa |
1903408 |
T |
|
| Q |
208 |
gttttattaactaatagttaaagtaaaacttgatcacttttatctttatcgtcaaattccctaagctcgacataggaggggaattgaactacttgtttaa |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1903409 |
gttttattaactaatagttaaagtaaaacttgatcacttttatctttattatcaaattccctaagctcgacagaggaggggaattgaactacttgtttaa |
1903508 |
T |
|
| Q |
308 |
tatgagaaatgtttttatgccaagaagattcaaagaccttgaaaggatgattgaatgtctacttagatttcttgtcatatgagaaagactaaacccttcc |
407 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1903509 |
tatgagatatgtttttatgccaagaagattcaaagatcttgaaaggataattgaatgtctatttagatttcttgtcatatgagaaagactaaacccttcc |
1903608 |
T |
|
| Q |
408 |
atgcaagatggaaatgatagagatctaaccttaataatgttcatggttaacttggaaatcgcaaacctcgaaagagtagtacccctaagttaaccatgat |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1903609 |
atgcaagatggaaatgatagagatctaaccttaataatgttcatggttaacttggaaatcgcaaacctcgaaagagtagtacccctaagttaaccatgat |
1903708 |
T |
|
| Q |
508 |
tgttgtgttgaaaaccccctaagaccactttggcctccaaaaagctatacgaagttgcaactctctacatctttgcaaactaatattcataaccgactca |
607 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1903709 |
tgttgtgttgaaaaccccctaaggccactttggcctccaaaaagctatacgaagttgcaactctctacatctttgcaaactaatattcataaccgactca |
1903808 |
T |
|
| Q |
608 |
ttgttata |
615 |
Q |
| |
|
|||||||| |
|
|
| T |
1903809 |
ttgttata |
1903816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 8 - 348
Target Start/End: Original strand, 1879440 - 1879776
Alignment:
| Q |
8 |
ttaggaacattgttagtgagtaatgcaaaaa-tctcattccttttcatattggattatgttttcatccatttcttatcttatttataattttgtgtttga |
106 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| |||||||| ||||||| | ||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
1879440 |
ttaggaaccttgtgagtgagtaatgcaaaaaatctcattctttttcat-------tgtgttttcttccatttcttatcttatttatatttttgtgtttga |
1879532 |
T |
|
| Q |
107 |
gcttatcatgagctaaaatactgtatggttaagacttgatgaggttatgattatatttgcataaggttggttagttgcgtactcatgcttcttttaagca |
206 |
Q |
| |
|
||||| |||||||||||| ||| | || ||||||| |||||||||||||||| |||||||||||||| ||| |||||| |||||||||||||||| || |
|
|
| T |
1879533 |
gcttaccatgagctaaaacactttgtgcttaagacacaatgaggttatgattatgtttgcataaggttgattaattgcgtgctcatgcttcttttaaaca |
1879632 |
T |
|
| Q |
207 |
agttttattaa--ctaatagttaaagtaaaacttgatcacttttatctttatcgtcaaattccctaagctcgacataggaggggaattgaactacttgtt |
304 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| |||||| |||| |||||||||| |||||||||||| |
|
|
| T |
1879633 |
agttttattaactctaatatttaaagtaaaacttgatcacttttatctttattgtcaaattccttaagcttgacagaggaggggaacggaactacttgtt |
1879732 |
T |
|
| Q |
305 |
taatatgagaaatgtttttatgccaagaagattcaaagaccttg |
348 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| |||||||||| |
|
|
| T |
1879733 |
taatatgagaaatgttttaatgttaagaagatataaagaccttg |
1879776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 16378744 - 16378650
Alignment:
| Q |
60 |
attatgttttcatccatttcttatcttatttataattttgtgtttgagcttatcatgagctaaaatactgtatggttaagacttgatgaggttat |
154 |
Q |
| |
|
||||| ||||||| || ||||||||||| || || |||||||||| | || ||||||||||||| ||| | ||||| |||||| |||| ||||| |
|
|
| T |
16378744 |
attatattttcattcacttcttatcttacttctatttttgtgtttaatctcatcatgagctaaaccactttttggttgagactttatgaagttat |
16378650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 416 - 448
Target Start/End: Original strand, 1879775 - 1879807
Alignment:
| Q |
416 |
tggaaatgatagagatctaaccttaataatgtt |
448 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
1879775 |
tggaaatggtagagatctaaccttaataatgtt |
1879807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 61 - 327
Target Start/End: Original strand, 29890622 - 29890894
Alignment:
| Q |
61 |
ttatgttttcatccatttcttatcttatttataattttgtgtttgagcttatcatgagctaaaa-tactgtatggttaagacttgatgaggttatgatta |
159 |
Q |
| |
|
|||||||||||| ||||| |||| ||||| | ||||| |||| |||| |||||||||||| |||| | | ||||| || ||||||||||||||||| |
|
|
| T |
29890622 |
ttatgttttcattcattttttataatatttttgtttttgcgtttaagctcgtcatgagctaaacctactttgtcgttaatacatgatgaggttatgatta |
29890721 |
T |
|
| Q |
160 |
tatttg-cataaggttggttagttgc--gtactcatgcttcttttaagcaagttttattaac--taatagttaaagtaaaacttgatcacttttatcttt |
254 |
Q |
| |
|
| |||| |||||| ||||||||||| ||||| | ||| |||||| |||||| ||||| | |||| |||||||||||||||||||||||||| ||| |
|
|
| T |
29890722 |
tgtttggcataagtttggttagttgtatgtactaaagctcattttaaacaagttgtattagccataatctttaaagtaaaacttgatcacttttatattt |
29890821 |
T |
|
| Q |
255 |
atcgtcaaattccctaagctcgacataggaggggaattgaactacttgtttaatatgagaaatgtttttatgc |
327 |
Q |
| |
|
| ||||||| || ||||||| | || |||||| |||||||||||||||||||| ||||||||| |||| |
|
|
| T |
29890822 |
aataccaaattctctgagctcgatggatgatgggaatggaactacttgtttaatatgaaaaatgttttaatgc |
29890894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 111 - 210
Target Start/End: Complemental strand, 37849662 - 37849563
Alignment:
| Q |
111 |
atcatgagctaaaatactgtatggttaagacttgatgaggttatgattatatttgcataaggttggttagttgcgtactcatgcttcttttaagcaagtt |
210 |
Q |
| |
|
||||||||||||| ||| ||| |||||||| |||||||||| |||||||||||||||||| ||||||||||| ||||||| |||||||||| |||||| |
|
|
| T |
37849662 |
atcatgagctaaaccactttatagttaagacgtgatgaggttctgattatatttgcataagtttggttagttgtgtactcaaacttcttttaaacaagtt |
37849563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 256
Target Start/End: Complemental strand, 29241637 - 29241439
Alignment:
| Q |
60 |
attatgttttcatccatttcttatcttatttataattttgtgtttgagcttatcatgagctaaaatactgtatggttaagacttgatgaggttatgatta |
159 |
Q |
| |
|
||||||||||||| |||||| || ||| |||| ||||||||| | || |||||||| ||||| || | |||||||||| |||||| |||||||| | |
|
|
| T |
29241637 |
attatgttttcattattttcttctcatatctatatctttgtgtttaatctcatcatgaggtaaaaccctttgtggttaagacatgatgatgttatgataa |
29241538 |
T |
|
| Q |
160 |
tatttgcataaggttggttagttgcgtactcatgcttcttttaagcaagttttattaa--ctaatagttaaagtaaaacttgatcacttttatctttat |
256 |
Q |
| |
|
| |||||||||| || ||| ||||| | | | | |||||||| ||| || |||||| ||||| |||||||||||| ||||||| ||||| |||||| |
|
|
| T |
29241537 |
tgtttgcataagtttagttcgttgcaaatttaagtctcttttaaacaaattgtattaactctaattgttaaagtaaaatttgatcatttttacctttat |
29241439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 507
Target Start/End: Complemental strand, 29241349 - 29241194
Alignment:
| Q |
346 |
ttgaaaggatgattgaatgtctacttagatttcttgtcatatgagaaagactaaacccttccatgcaagatggaaatgatagagatctaaccttaataat |
445 |
Q |
| |
|
|||||||| || |||||| |||| |||||||||||||||| || ||||||| |||| ||| | | || |||| | ||||| | ||||||||||| |
|
|
| T |
29241349 |
ttgaaaggttgtttgaatatctatctagatttcttgtcataggaaaaagactcaacctttctaaggaa------aatgtttgagatatgaccttaataat |
29241256 |
T |
|
| Q |
446 |
gtt-catggttaacttggaaatcgcaaacctcgaaagagtagtacccctaagttaaccatgat |
507 |
Q |
| |
|
||| |||||||||| ||| | | | |||||||||||||||||||||| | |||||||||||| |
|
|
| T |
29241255 |
gttgcatggttaacctggtagttgtgaacctcgaaagagtagtacccc-atgttaaccatgat |
29241194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 4856485 - 4856440
Alignment:
| Q |
227 |
aaagtaaaacttgatcacttttatctttatcgtcaaattccctaag |
272 |
Q |
| |
|
||||||||| ||||||||||||| |||||| ||||||| ||||||| |
|
|
| T |
4856485 |
aaagtaaaaattgatcacttttacctttattgtcaaatcccctaag |
4856440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 62 - 171
Target Start/End: Complemental strand, 5676955 - 5676846
Alignment:
| Q |
62 |
tatgttttcatccatttcttatcttatttataattttgtgtttgagcttatcatgagctaaaatactgtatggttaagacttgatgaggttatgattata |
161 |
Q |
| |
|
|||| |||||| |||||||| |||||||| || |||||||||| |||| ||||||||||||| || | |||||||||| |||||| ||||||||||| |
|
|
| T |
5676955 |
tatgctttcattcatttcttctcttatttctatttttgtgtttaagctcatcatgagctaaacccctttttggttaagacatgatgatgttatgattatg |
5676856 |
T |
|
| Q |
162 |
tttgcataag |
171 |
Q |
| |
|
|||||||||| |
|
|
| T |
5676855 |
tttgcataag |
5676846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 5676697 - 5676648
Alignment:
| Q |
218 |
ctaatagttaaagtaaaacttgatcacttttatctttatcgtcaaattcc |
267 |
Q |
| |
|
|||||| |||||| ||||||||||||| ||| ||||||| |||||||||| |
|
|
| T |
5676697 |
ctaatatttaaagcaaaacttgatcacatttgtctttattgtcaaattcc |
5676648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 60 - 265
Target Start/End: Complemental strand, 41507913 - 41507707
Alignment:
| Q |
60 |
attatgttttcatccatttcttatcttatttataattttgtgtttgagcttatcatgagctaaaatactgtatggttaagacttgatgaggttatgatta |
159 |
Q |
| |
|
||||||||||||| || |||||||||||||| | ||||| ||||| |||| |||||||||||| || ||||||| || |||||||||| |||| | |
|
|
| T |
41507913 |
attatgttttcattcacttcttatcttatttct-attttttgtttaagctcatcatgagctaacccgcttggtggttaatacatgatgaggttttgatca |
41507815 |
T |
|
| Q |
160 |
tatttgcataaggttggttagttgcgtactcatgcttcttttaagcaagttttattaact--aatagttaaagtaaaacttgatcacttttatctttatc |
257 |
Q |
| |
|
| ||| | |||| |||||||||| | |||| | ||| |||||| ||||||||| |||| ||| ||||||||||| || ||||||||||||||| |
|
|
| T |
41507814 |
tgtttacgtaagtttggttagttacctacttaaacttattttaaataagttttataaacttcaatctgtaaagtaaaacgagaccacttttatctttatt |
41507715 |
T |
|
| Q |
258 |
gtcaaatt |
265 |
Q |
| |
|
|||||||| |
|
|
| T |
41507714 |
gtcaaatt |
41507707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 478 - 598
Target Start/End: Complemental strand, 2389700 - 2389582
Alignment:
| Q |
478 |
aaagagtagtacccctaagttaaccatgattgttgtgttga-aaaccccctaagaccactttggcctccaaaaagctatacgaagttgcaactctctaca |
576 |
Q |
| |
|
||||||||||| ||||||||||| |||||| |||||||||| ||| |||| | |||||| ||| ||| || ||||||||||||||| ||||||| || | |
|
|
| T |
2389700 |
aaagagtagtatccctaagttaatcatgatggttgtgttgagaaaacccccaggaccac-ttgttctctaagaagctatacgaagttacaactctataaa |
2389602 |
T |
|
| Q |
577 |
tctttgcaaactaatattcata |
598 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
2389601 |
--tttgcaaactcatattcata |
2389582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 156 - 326
Target Start/End: Complemental strand, 25030558 - 25030385
Alignment:
| Q |
156 |
attatatttgcataaggttggttagttgcgtactcatgcttcttttaagcaagttttattaacta-atagt-taaagtaaaacttgatcacttttatctt |
253 |
Q |
| |
|
|||||||||||| ||| ||||| |||| | || | | ||||||||||| |||||| ||| |||| || || || ||||||| ||||||||||||||||| |
|
|
| T |
25030558 |
attatatttgcaaaagtttggtaagttacatatttaagcttcttttaaacaagttgtataaactctattgtatacagtaaaagttgatcacttttatctt |
25030459 |
T |
|
| Q |
254 |
tatcgtcaaattccctaagc-tcgacataggaggggaattgaactacttgtttaatatgagaaatgtttttatg |
326 |
Q |
| |
|
| | | |||||||| | | | |||| | |||| |||||| |||||||| |||||||||||| || |||||||| |
|
|
| T |
25030458 |
tgttgccaaattccttgatcatcgagagaggatgggaatgtaactacttatttaatatgagagatatttttatg |
25030385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 51
Target Start/End: Original strand, 8691806 - 8691836
Alignment:
| Q |
21 |
tagtgagtaatgcaaaaatctcattcctttt |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
8691806 |
tagtgagtaatgcaaaaatctcattcctttt |
8691836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 51
Target Start/End: Original strand, 9043675 - 9043705
Alignment:
| Q |
21 |
tagtgagtaatgcaaaaatctcattcctttt |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
9043675 |
tagtgagtaatgcaaaaatctcattcctttt |
9043705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 418 - 518
Target Start/End: Original strand, 11435862 - 11435963
Alignment:
| Q |
418 |
gaaatgatagagatctaaccttaataatgtt-catggttaacttggaaatcgcaaacctcgaaagagtagtacccctaagttaaccatgattgttgtgtt |
516 |
Q |
| |
|
|||||| | ||||||| ||||||||| ||| |||||||||||||| |||| | ||||| || | ||||||||||||||||| |||||| |||||||| |
|
|
| T |
11435862 |
gaaatggttgagatctgaccttaatattgtggcatggttaacttggcaatcacgaaccttgagaaagtagtacccctaagttcgccatgaaggttgtgtt |
11435961 |
T |
|
| Q |
517 |
ga |
518 |
Q |
| |
|
|| |
|
|
| T |
11435962 |
ga |
11435963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 21639510 - 21639435
Alignment:
| Q |
95 |
ttttgtgtttgagcttatcatgagctaaaatactgta-tggttaagacttgatgaggttatgattatatttgcata |
169 |
Q |
| |
|
||||||| ||||||| ||||| ||||||| || || ||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
21639510 |
ttttgtggttgagctcatcataagctaaatctctttagtggtttagacatgatgaggttatgattatatttgcata |
21639435 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0501 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0501
Description:
Target: scaffold0501; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 9661 - 9631
Alignment:
| Q |
225 |
ttaaagtaaaacttgatcacttttatcttta |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
9661 |
ttaaagtaaaacttgatcacttttatcttta |
9631 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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