View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4871-Insertion-7 (Length: 471)
Name: NF4871-Insertion-7
Description: NF4871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4871-Insertion-7 |
 | |
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| [»] scaffold0006 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 9 - 471
Target Start/End: Original strand, 276155 - 276617
Alignment:
| Q |
9 |
agatgacatccagataatcccataatttcaacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
276155 |
agatgacatccagataatcccataatttcaacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttt |
276254 |
T |
|
| Q |
109 |
taagaactggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
276255 |
taagaactggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaa |
276354 |
T |
|
| Q |
209 |
tgtagttttcttgcctacatatttgtcnnnnnnngagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaaca |
308 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
276355 |
tgtagttttcttgcctacatatttgtcaaaaaaagagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaaca |
276454 |
T |
|
| Q |
309 |
ggaacccaatgtttacgttcttcatataaagactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
276455 |
ggaacccaatgtttacgttcttcatataaagactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaa |
276554 |
T |
|
| Q |
409 |
actgttgtattgacagagacttgtatatacatgcgtcaaaatatcccatgaaatcttcattat |
471 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
276555 |
actgttgtattgacagagacttgtatatgcatgcatcaaaatatcccatgaaatcttcattat |
276617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 9 - 471
Target Start/End: Original strand, 26396760 - 26397222
Alignment:
| Q |
9 |
agatgacatccagataatcccataatttcaacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396760 |
agatgacatccagataatcccataatttcaacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttt |
26396859 |
T |
|
| Q |
109 |
taagaactggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26396860 |
taagaactggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaa |
26396959 |
T |
|
| Q |
209 |
tgtagttttcttgcctacatatttgtcnnnnnnngagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaaca |
308 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396960 |
tgtagttttcttgcctacatatttgtcaaaaaaagagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaaca |
26397059 |
T |
|
| Q |
309 |
ggaacccaatgtttacgttcttcatataaagactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26397060 |
ggaacccaatgtttacgttcttcatataaagactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaa |
26397159 |
T |
|
| Q |
409 |
actgttgtattgacagagacttgtatatacatgcgtcaaaatatcccatgaaatcttcattat |
471 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
26397160 |
actgttgtattgacagagacttgtatatgcatgcatcaaaatatcccatgaaatcttcattat |
26397222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 19217236 - 19217305
Alignment:
| Q |
166 |
tatcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtc |
235 |
Q |
| |
|
|||||||||| | |||| |||||||||| ||| || || |||||||||||||| |||||||||||||| |
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| T |
19217236 |
tatcttgcaaggaaactatatatttttcattaaactcctttaatgtagttttcttacctacatatttgtc |
19217305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 11 - 471
Target Start/End: Original strand, 29047 - 29507
Alignment:
| Q |
11 |
atgacatccagataatcccataatttcaacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagtttta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29047 |
atgacatccagataatcccataatttcaacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagtttta |
29146 |
T |
|
| Q |
111 |
agaactggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaatg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29147 |
agaactggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaatg |
29246 |
T |
|
| Q |
211 |
tagttttcttgcctacatatttgtcnnnnnnngagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacagg |
310 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
29247 |
tagttttcttgcctacatatttgtcaaaaaaagagttgatgctctctaatctttgagttgttgacatgccagcgaaaaaggtatctttcatgtaaacagg |
29346 |
T |
|
| Q |
311 |
aacccaatgtttacgttcttcatataaagactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaaac |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29347 |
aacccaatgtttacgttcttcatataaagactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaaac |
29446 |
T |
|
| Q |
411 |
tgttgtattgacagagacttgtatatacatgcgtcaaaatatcccatgaaatcttcattat |
471 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29447 |
tgttgtattgacagagacttgtatatgcatgcgtcaaaatatcccatgaaatcttcattat |
29507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 15 - 349
Target Start/End: Complemental strand, 56109273 - 56108939
Alignment:
| Q |
15 |
catccagataatcccataatttcaacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttttaagaa |
114 |
Q |
| |
|
|||||||||||||||| || ||||||||| || || ||||| | |||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
56109273 |
catccagataatcccaaaacttcaacttgaaatttcttgaagatttcatgtgtatatatcatcgacatttgcttctcaaaaggtgatggagtcctaagaa |
56109174 |
T |
|
| Q |
115 |
ctggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagt |
214 |
Q |
| |
|
| ||||| || |||||||| ||||||||||| ||| |||| || ||||| ||||| || |||||||||| ||||||||| |||||||| || |||||||| |
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|
| T |
56109173 |
caggttgcttgtgccatgtcttaaaatcagcttgcttttccgcctcttctctatcatgtaaagcaactttatatttttcgacaaattcctttaatgtagt |
56109074 |
T |
|
| Q |
215 |
tttcttgcctacatatttgtcnnnnnnngagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacaggaacc |
314 |
Q |
| |
|
|||||| | |||||||||||| || || |||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
56109073 |
tttcttacatacatatttgtcaaaaaaagaattaatgctctctgatctttgagttgttgacaagccaccaaaaaatgtatcattcatgtaaacaggaacc |
56108974 |
T |
|
| Q |
315 |
caatgtttacgttcttcatataaagactgaatcca |
349 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||| |
|
|
| T |
56108973 |
caatgttcacgttcttcatataaagagtgaatcca |
56108939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 243 - 469
Target Start/End: Original strand, 20645735 - 20645955
Alignment:
| Q |
243 |
gagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacaggaacccaatgtttacgttcttcatataaagact |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||||| |||| |
|
|
| T |
20645735 |
gagttgatgctctctgatctttgagttgttgacataccaccaaaaaatgtatctttcatgtaaacaggaattcaatgttcacgttcttcatataacgact |
20645834 |
T |
|
| Q |
343 |
gaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaaactgttgtattgacagagacttgtatatacatgc |
442 |
Q |
| |
|
||||||| ||||||| || || |||||||| |||||||||||| | || ||| ||| ||||||||||||||| | |||||||| || |||| |
|
|
| T |
20645835 |
gaatccatacatcctc------agacagctgaaatttttctaccatttcttctcatttatcttgaaactgttgtattgaacgggacttgtaaatgcatga |
20645928 |
T |
|
| Q |
443 |
gtcaaaatatcccatgaaatcttcatt |
469 |
Q |
| |
|
|| |||||||||||||||||| ||||| |
|
|
| T |
20645929 |
gttaaaatatcccatgaaatcatcatt |
20645955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 13 - 346
Target Start/End: Complemental strand, 26015041 - 26014709
Alignment:
| Q |
13 |
gacatccagataatcccataatttcaacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttttaag |
112 |
Q |
| |
|
|||||||||||||||||| || ||||||||| || || |||| | || ||| ||||| ||| | ||||||||||||||||||||||||||||| |||| |
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|
| T |
26015041 |
gacatccagataatcccaaaacttcaacttgaaatttcttgacgattt-atgtgtatatatcctcgacatttgcttctcaaaaggtgatggagtcctaag |
26014943 |
T |
|
| Q |
113 |
aactggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaatgta |
212 |
Q |
| |
|
||| |||| || |||||||| ||||||||||| ||| |||| || ||||| ||||| || |||||||||| ||||||||| |||||||| || ||||| |
|
|
| T |
26014942 |
aacacgttgcttgtgccatgtcttaaaatcagcttgcttttccgcctcttctctatcatgtaaagcaactttatatttttcgacaaattcctttaatgtt |
26014843 |
T |
|
| Q |
213 |
gttttcttgcctacatatttgtcnnnnnnngagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacaggaa |
312 |
Q |
| |
|
|||||||| | |||||||||||| || || |||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
26014842 |
gttttcttacatacatatttgtcaaaaaaagaattaatgctctctgatctttgagttgttgacaagccaccaaaaaatgtatcattcatgtaaacaggaa |
26014743 |
T |
|
| Q |
313 |
cccaatgtttacgttcttcatataaagactgaat |
346 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||| |
|
|
| T |
26014742 |
cccaatgttcacgttcttcatataaagagtgaat |
26014709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 174 - 327
Target Start/End: Complemental strand, 6967547 - 6967394
Alignment:
| Q |
174 |
aaagcaacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtcnnnnnnngagttgatgctctctgatctttgagttgttg |
273 |
Q |
| |
|
|||||||||| ||||||||| |||||||| || |||||||||||||| | |||||||||||| || || ||||||||||||||||||||||||| |
|
|
| T |
6967547 |
aaagcaactttatatttttcgacaaattcctttaatgtagttttcttacatacatatttgtcaaaaaaagaattaatgctctctgatctttgagttgttg |
6967448 |
T |
|
| Q |
274 |
acatgccaccgaaaaaggtatctttcatgtaaacaggaacccaatgtttacgtt |
327 |
Q |
| |
|
||| |||||| ||||| ||||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
6967447 |
acaagccaccaaaaaatgtatcattcatgtaaataggaacccaatgttcacgtt |
6967394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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