View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4871_high_1 (Length: 590)
Name: NF4871_high_1
Description: NF4871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4871_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 14 - 419
Target Start/End: Original strand, 1886324 - 1886731
Alignment:
| Q |
14 |
attatactgactaaacaagttacattctgtcaaatttgttattaacaacccttgtatataacatcaactattctctactcatatctacaacgaaatcctt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1886324 |
attatactgactaaacaagttacattctgtcaagtttgttattaacaacccttgtatataacatcaactattctctactcatatctacaacgaaagcctt |
1886423 |
T |
|
| Q |
114 |
ttcttggtttagttttagtactaagtgttcgaggtgaatttatttagattttgttgatatctagttatttggacaatttatgctcattatggttagtttt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1886424 |
ttcttggtttagttttagtactaagtgttagaggtgaatttatttagattttgttgatatctagttatttggacaatttatgctcattatggttggtttt |
1886523 |
T |
|
| Q |
214 |
atgggttggttgtgtgtttgttgcaaagttgtacaaagatgcagccctggaggtataaacaacatcgttgtaggattgcaagcacaggtagttgggtcac |
313 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1886524 |
atgggttggttgtttgtttgttgcaaagttgtacaaagatgcagccctggaggtataaacaacatcgttgtaggattgcaagtacaggtagttgggtcac |
1886623 |
T |
|
| Q |
314 |
caatgattgtcagtatgatgaaaaataatgaattttttgctccaaatgtgacaggggcataacttggatagagacaagacttgtac--tataaaaggaca |
411 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1886624 |
caatgattgtcagtatgatgaaaaataaggaattttttgctccaaatgtgacaggggcataacttggatagagacaagacttgtactatataaaaggaca |
1886723 |
T |
|
| Q |
412 |
acgacaat |
419 |
Q |
| |
|
|||||||| |
|
|
| T |
1886724 |
acgacaat |
1886731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 415 - 572
Target Start/End: Original strand, 1903057 - 1903214
Alignment:
| Q |
415 |
acaatgttgtgacaagggtctgaaatttgtcatccaatttaagcggccgtttccaactagggttagcagccacttaagatctcagaacccatattctact |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1903057 |
acaatgttgtgacaagggtctgaaatttgtcatccaatttaagcggtcgtttccaactagggttagcagccacttaagatctcagaacccatattctact |
1903156 |
T |
|
| Q |
515 |
catcatccatttcattggagagcatgatagctagtttttacttagttggagttttagg |
572 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1903157 |
catcatccatttcattggagagcatgatagctagttcttacttagttggagttttagg |
1903214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 371 - 572
Target Start/End: Original strand, 1879243 - 1879444
Alignment:
| Q |
371 |
cataacttggatagagacaagacttgtactataaaaggacaacgacaatgttgtgacaagggtctgaaatttgtcatccaatttaagcggccgtttccaa |
470 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||| | ||||||||| ||||||| ||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
1879243 |
cataatttggatagagacaagacttgtaatataaaaggacgatgacaatgttctgacaagtgtctgaaatttgtcatcttgtttaagcggcggtttccaa |
1879342 |
T |
|
| Q |
471 |
ctagggttagcagccacttaagatctcagaacccatattctactcatcatccatttcattggagagcatgatagctagtttttacttagttggagtttta |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | | |||||||||||| |||||| |
|
|
| T |
1879343 |
ctagggttagcagccacttaagatctcagaacccatattctactcatcattcatttcattggagagcatgatagctcgctcttacttagttggggtttta |
1879442 |
T |
|
| Q |
571 |
gg |
572 |
Q |
| |
|
|| |
|
|
| T |
1879443 |
gg |
1879444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 1876648 - 1876786
Alignment:
| Q |
14 |
attatactgactaaacaagttacattctgtcaaatttgttattaacaacccttgtatataacatcaactattctctactcatatctacaacgaaatcctt |
113 |
Q |
| |
|
|||||| ||| ||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1876648 |
attatattgagtaaacaaattacattctgtcaactttgttattaacaacccttctatataacatcaactattctctactcatatctacaacgaaatcctt |
1876747 |
T |
|
| Q |
114 |
ttcttggtttag-ttttagtactaagtgttcgaggtgaa |
151 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| |||||||| |
|
|
| T |
1876748 |
ttcttggtttagtttttagtaccaagtgttagaggtgaa |
1876786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 180 - 292
Target Start/End: Original strand, 1877779 - 1877891
Alignment:
| Q |
180 |
atttggacaatttatgctcattatggttagttttatgggttggttgtgtgtttgttgcaaagttgtacaaagatgcagccctggaggtataaacaacatc |
279 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
1877779 |
atttggataatttatgctcattatggttggttttatgggttggttgtgtgtttgttgcaaagttgtacaaagatgcagccccggaggcataaacaacatc |
1877878 |
T |
|
| Q |
280 |
gttgtaggattgc |
292 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
1877879 |
gttgtaagattgc |
1877891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 362
Target Start/End: Original strand, 1879148 - 1879206
Alignment:
| Q |
304 |
gttgggtcaccaatgattgtcagtatgatgaaaaataatgaattttttgctccaaatgt |
362 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||||||| ||||||||| ||||||||| |
|
|
| T |
1879148 |
gttgggtcaccgatgattgtcggtacaatgaaaaataaggaattttttattccaaatgt |
1879206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 409
Target Start/End: Original strand, 17415792 - 17415833
Alignment:
| Q |
368 |
gggcataacttggatagagacaagacttgtactataaaagga |
409 |
Q |
| |
|
|||||||| |||||||||| | |||||||||||||||||||| |
|
|
| T |
17415792 |
gggcataatttggatagaggctagacttgtactataaaagga |
17415833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University