View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4871_high_10 (Length: 202)

Name: NF4871_high_10
Description: NF4871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4871_high_10
NF4871_high_10
[»] chr3 (9 HSPs)
chr3 (12-107)||(36626932-36627027)
chr3 (21-107)||(36627862-36627946)
chr3 (23-107)||(2124229-2124313)
chr3 (125-184)||(36627060-36627119)
chr3 (22-96)||(41387276-41387350)
chr3 (22-79)||(10987512-10987569)
chr3 (21-76)||(43102092-43102147)
chr3 (24-96)||(42632907-42632979)
chr3 (22-96)||(41386329-41386403)
[»] chr7 (13 HSPs)
chr7 (23-107)||(22061627-22061711)
chr7 (21-85)||(7147915-7147979)
chr7 (21-107)||(7146977-7147063)
chr7 (125-184)||(7147792-7147851)
chr7 (21-107)||(22746154-22746238)
chr7 (23-107)||(48671283-48671367)
chr7 (22-93)||(46673688-46673759)
chr7 (22-107)||(22744945-22745030)
chr7 (32-96)||(22060673-22060737)
chr7 (22-58)||(7347101-7347137)
chr7 (47-79)||(1973976-1974008)
chr7 (56-96)||(7147882-7147922)
chr7 (22-58)||(48754193-48754229)
[»] chr8 (11 HSPs)
chr8 (23-96)||(43275950-43276023)
chr8 (28-96)||(14822030-14822098)
chr8 (48-107)||(4807906-4807965)
chr8 (22-93)||(31624105-31624176)
chr8 (22-77)||(41867777-41867832)
chr8 (22-67)||(38590019-38590064)
chr8 (23-54)||(27750506-27750537)
chr8 (22-79)||(41867069-41867126)
chr8 (31-67)||(3237625-3237661)
chr8 (24-96)||(38590855-38590927)
chr8 (22-58)||(45385677-45385713)
[»] chr5 (2 HSPs)
chr5 (22-107)||(19569458-19569543)
chr5 (22-79)||(26404070-26404127)
[»] scaffold2127 (1 HSPs)
scaffold2127 (22-93)||(361-432)
[»] chr2 (3 HSPs)
chr2 (21-96)||(15650639-15650714)
chr2 (24-74)||(2581984-2582034)
chr2 (23-71)||(34039453-34039501)
[»] chr1 (5 HSPs)
chr1 (22-93)||(47136533-47136604)
chr1 (24-96)||(25787007-25787079)
chr1 (32-72)||(48467448-48467488)
chr1 (22-67)||(16217639-16217684)
chr1 (23-51)||(3978244-3978272)
[»] chr4 (11 HSPs)
chr4 (23-96)||(55953007-55953080)
chr4 (24-96)||(44126799-44126871)
chr4 (22-93)||(5688483-5688554)
chr4 (22-96)||(37559197-37559271)
chr4 (30-96)||(33376426-33376492)
chr4 (22-96)||(37560143-37560217)
chr4 (22-79)||(1273293-1273350)
chr4 (30-96)||(44128183-44128249)
chr4 (30-79)||(4373584-4373633)
chr4 (22-50)||(33377253-33377281)
chr4 (22-58)||(53400383-53400419)
[»] chr6 (2 HSPs)
chr6 (21-107)||(8412150-8412234)
chr6 (23-79)||(8411286-8411342)
[»] scaffold0369 (1 HSPs)
scaffold0369 (22-79)||(13103-13160)
[»] scaffold0007 (1 HSPs)
scaffold0007 (30-96)||(145714-145780)


Alignment Details
Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 36626932 - 36627027
Alignment:
Q  12 agcagagacagcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcatcaaccttcata 107  Q
    |||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36626932 agcacagatagcataccgtggactcacaacatatgataacttttattgtcatcttcttccctcttcattgtcatgtaaccttcatcaaccttcata 36627027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 36627946 - 36627862
Alignment:
Q  21 agcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcatcaaccttcata 107  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36627946 agcataccgtggactcacaacata--ataacttctattgtcatcttcttccttcttcattgtcatgtaaccttcatcaaccttcata 36627862  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 2124229 - 2124313
Alignment:
Q  23 cataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcatcaaccttcata 107  Q
    |||| |||||| |||||||||||||||||| ||||| ||||||||||||||||||||  |||||||||||| |||||||||||||    
T  2124229 catatcgtggattcacaacatatgataactcctattttcatcttcttccctcttcatcttcatgtaacctttatcaaccttcata 2124313  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 125 - 184
Target Start/End: Original strand, 36627060 - 36627119
Alignment:
Q  125 tccaaattttttctttcaaaaatctattattgcaacttcatcaaaaacaatataatcacc 184  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36627060 tccaatttttttctttcaaaaatttattattgcaacttcatcaaaaacaatataatcacc 36627119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 41387350 - 41387276
Alignment:
Q  22 gcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcat 96  Q
    ||||||||||||||||||||||||||||||||| ||  |||||||||||| |||||||  |||| ||||||||||    
T  41387350 gcataccgtggactcacaacatatgataacttccatcttcatcttcttccatcttcatcttcatataaccttcat 41387276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 10987569 - 10987512
Alignment:
Q  22 gcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcat 79  Q
    |||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  10987569 gcatacagtggactcacaacataggataacttctatggtcatcttcttccctcttcat 10987512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 43102092 - 43102147
Alignment:
Q  21 agcataccgtggactcacaacatatgataacttctattgtcatcttcttccctctt 76  Q
    |||||||||||||||||||||||| ||||| || ||||||||||||||||||||||    
T  43102092 agcataccgtggactcacaacatacgataatttttattgtcatcttcttccctctt 43102147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 42632907 - 42632979
Alignment:
Q  24 ataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcat 96  Q
    ||||||||||||||||||||||||||||||  ||  |||||||||||| |||||||  || | ||||||||||    
T  42632907 ataccgtggactcacaacatatgataactttcatgttcatcttcttccatcttcatcttcctataaccttcat 42632979  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 41386329 - 41386403
Alignment:
Q  22 gcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcat 96  Q
    |||||||||||||||||||  |||||||||||| ||  |||||||| ||| |||| ||  |||| ||||||||||    
T  41386329 gcataccgtggactcacaatgtatgataacttccatcttcatcttcctccatctttatcttcatataaccttcat 41386403  T

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Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 22061711 - 22061627
Alignment:
Q  23 cataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcatcaaccttcata 107  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||  |||||||||||| |||||||||||||    
T  22061711 catatcgtggactcgcaacatatgataactcctattgtcatcttcttccctcttcatcttcatgtaacctttatcaaccttcata 22061627  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 7147979 - 7147915
Alignment:
Q  21 agcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcat 85  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  7147979 agcataccgtggactcacaacatatgataacttctatggtcatcttcttccctctccattgtcat 7147915  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 7146977 - 7147063
Alignment:
Q  21 agcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcatcaaccttcata 107  Q
    |||||||| || ||| ||||||||| |||||||||||||||||||||||||||||||||  | ||||||||||||||||| ||||||    
T  7146977 agcataccatgaacttacaacatataataacttctattgtcatcttcttccctcttcatcttgatgtaaccttcatcaactttcata 7147063  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 7147851 - 7147792
Alignment:
Q  125 tccaaattttttctttcaaaaatctattattgcaacttcatcaaaaacaatataatcacc 184  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7147851 tccaatttttttctttcaaaaatttattattgcaacttcatcaaaaacaatataatcacc 7147792  T

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Target: chr7; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 22746238 - 22746154
Alignment:
Q  21 agcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcatcaaccttcata 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||  |||| |||  |||||||| |||||||    
T  22746238 agcataccgtggactcacaacatacgataacttctattgtcatcttcttccctctccatcttcatataa--ttcatcaaacttcata 22746154  T

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Target: chr7; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 48671283 - 48671367
Alignment:
Q  23 cataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcatcaaccttcata 107  Q
    |||| ||| |||||||||  |||||||||||||||| || |||||||||||||||||  |||| |||||||||||||||||||||    
T  48671283 catatcgtagactcacaatgtatgataacttctattatcgtcttcttccctcttcatcttcatataaccttcatcaaccttcata 48671367  T

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Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 46673688 - 46673759
Alignment:
Q  22 gcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaacctt 93  Q
    |||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||  |||| |||||||    
T  46673688 gcatactgtggactcacaacatatgataacttttattatcatcttcttccctcttcatcttcatataacctt 46673759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 22744945 - 22745030
Alignment:
Q  22 gcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcatcaaccttcata 107  Q
    |||||| ||| ||||||||||||  ||||||||||||||||||||||||||| |||||  |||| ||||||||||||  |||||||    
T  22744945 gcatacggtgtactcacaacatactataacttctattgtcatcttcttcccttttcatcttcatataaccttcatcactcttcata 22745030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 22060673 - 22060737
Alignment:
Q  32 gactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcat 96  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||  |||| ||||||||||    
T  22060673 gacttacaacatatgataacttctattgtcatcttcttccttcttcatcttcatataaccttcat 22060737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 7347137 - 7347101
Alignment:
Q  22 gcataccgtggactcacaacatatgataacttctatt 58  Q
    ||||||||||||||||||||||||||||| |||||||    
T  7347137 gcataccgtggactcacaacatatgataatttctatt 7347101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 1974008 - 1973976
Alignment:
Q  47 ataacttctattgtcatcttcttccctcttcat 79  Q
    ||||||||||| |||||||||||||||||||||    
T  1974008 ataacttctatggtcatcttcttccctcttcat 1973976  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 7147922 - 7147882
Alignment:
Q  56 attgtcatcttcttccctcttcattgtcatgtaaccttcat 96  Q
    |||||||||||||||||| |||||  |||||||||||||||    
T  7147922 attgtcatcttcttcccttttcatcttcatgtaaccttcat 7147882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 48754193 - 48754229
Alignment:
Q  22 gcataccgtggactcacaacatatgataacttctatt 58  Q
    |||||||||||||| |||||||||||||| |||||||    
T  48754193 gcataccgtggactgacaacatatgataatttctatt 48754229  T

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Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 43275950 - 43276023
Alignment:
Q  23 cataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcat 96  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||  |||||||||||||||    
T  43275950 cataccatggactcacaacatattataacttctattgtcatcttcttccctcctcatcttcatgtaaccttcat 43276023  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 14822030 - 14822098
Alignment:
Q  28 cgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcat 96  Q
    |||| ||||| || ||||||||||||||||||||||||||||||||||||||  |||| ||||||||||    
T  14822030 cgtgcactcaaaatatatgataacttctattgtcatcttcttccctcttcatcttcatataaccttcat 14822098  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 4807906 - 4807965
Alignment:
Q  48 taacttctattgtcatcttcttccctcttcattgtcatgtaaccttcatcaaccttcata 107  Q
    |||||| |||||||||||||||||||||||||  |||| || ||||||||||||||||||    
T  4807906 taacttatattgtcatcttcttccctcttcatcttcatatagccttcatcaaccttcata 4807965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 31624105 - 31624176
Alignment:
Q  22 gcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaacctt 93  Q
    |||||| || |||| |||||||||||||| || |||||||||||||||||||||||||  |||| |||||||    
T  31624105 gcatactgtagacttacaacatatgataatttttattgtcatcttcttccctcttcatcttcatataacctt 31624176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 41867832 - 41867777
Alignment:
Q  22 gcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttc 77  Q
    |||||| ||||| |||||||||| |||||||||||| |||||||||||||||||||    
T  41867832 gcatacagtggattcacaacataggataacttctatggtcatcttcttccctcttc 41867777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 38590019 - 38590064
Alignment:
Q  22 gcataccgtggactcacaacatatgataacttctattgtcatcttc 67  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||||    
T  38590019 gcataccgtggactcacaacatatgataacttccatcttcatcttc 38590064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 54
Target Start/End: Complemental strand, 27750537 - 27750506
Alignment:
Q  23 cataccgtggactcacaacatatgataacttc 54  Q
    ||||||||||||||||||||||||||||||||    
T  27750537 cataccgtggactcacaacatatgataacttc 27750506  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 41867069 - 41867126
Alignment:
Q  22 gcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcat 79  Q
    ||||||| |||||| | ||| |||||||| ||||||  ||||||||||||||||||||    
T  41867069 gcataccatggactaataacttatgataaattctataatcatcttcttccctcttcat 41867126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 3237625 - 3237661
Alignment:
Q  31 ggactcacaacatatgataacttctattgtcatcttc 67  Q
    ||||||||||||||||||||  |||||||||||||||    
T  3237625 ggactcacaacatatgataaaatctattgtcatcttc 3237661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 38590927 - 38590855
Alignment:
Q  24 ataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcat 96  Q
    |||||||||||| || ||||||||||| ||| ||  |||||||||||| |||||||  || | ||||||||||    
T  38590927 ataccgtggacttacgacatatgataatttccatgttcatcttcttccatcttcatcttcctataaccttcat 38590855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 45385713 - 45385677
Alignment:
Q  22 gcataccgtggactcacaacatatgataacttctatt 58  Q
    |||||||||||||| |||||||||||||| |||||||    
T  45385713 gcataccgtggactgacaacatatgataatttctatt 45385677  T

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Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 19569543 - 19569458
Alignment:
Q  22 gcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcatcaaccttcata 107  Q
    ||||||||||||||||||||||||||||||||| ||  |||||||||||| |||||||  |||| || ||||||||||||||||||    
T  19569543 gcataccgtggactcacaacatatgataacttccatcttcatcttcttccatcttcatcttcatatatccttcatcaaccttcata 19569458  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 26404127 - 26404070
Alignment:
Q  22 gcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcat 79  Q
    |||||||||||||||| |||| ||||||| ||| ||||||||||||||||||||||||    
T  26404127 gcataccgtggactcataacacatgataatttccattgtcatcttcttccctcttcat 26404070  T

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Target: scaffold2127 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold2127
Description:

Target: scaffold2127; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 432 - 361
Alignment:
Q  22 gcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaacctt 93  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||  |||| |||||||    
T  432 gcataccgtggactcacaacatatgataacttttattgtcatcttcttccctcttaatcttcatataacctt 361  T

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Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 15650639 - 15650714
Alignment:
Q  21 agcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcat 96  Q
    ||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||  |||| ||||||||||    
T  15650639 agcatactgtggactcacaacatatgataatttttattgtcatcttcttccctcttcatcttcatataaccttcat 15650714  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 2581984 - 2582034
Alignment:
Q  24 ataccgtggactcacaacatatgataacttctattgtcatcttcttccctc 74  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2581984 ataccgtggactcacaacatatgataaattctattgtcatcttcttccctc 2582034  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 34039453 - 34039501
Alignment:
Q  23 cataccgtggactcacaacatatgataacttctattgtcatcttcttcc 71  Q
    |||||||| ||||||||||||| ||||| || |||||||||||||||||    
T  34039453 cataccgtagactcacaacatacgataatttttattgtcatcttcttcc 34039501  T

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Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 47136604 - 47136533
Alignment:
Q  22 gcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaacctt 93  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||  |||| |||||||    
T  47136604 gcataccgtggactcacaacatatgataacttttattgtcatcttcttccctcttaatcttcatataacctt 47136533  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 25787079 - 25787007
Alignment:
Q  24 ataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcat 96  Q
    ||||||||||||||||||||||||||||||| ||  |||||||||||  |||||||  || | ||||||||||    
T  25787079 ataccgtggactcacaacatatgataacttccatgttcatcttcttcaatcttcatcttcctataaccttcat 25787007  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 48467448 - 48467488
Alignment:
Q  32 gactcacaacatatgataacttctattgtcatcttcttccc 72  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  48467448 gactcacaacatatgataacttatattgtcatcttcttccc 48467488  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 16217639 - 16217684
Alignment:
Q  22 gcataccgtggactcacaacatatgataacttctattgtcatcttc 67  Q
    |||||||||||||||||||| ||  |||||||||||||||||||||    
T  16217639 gcataccgtggactcacaacgtaccataacttctattgtcatcttc 16217684  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 51
Target Start/End: Original strand, 3978244 - 3978272
Alignment:
Q  23 cataccgtggactcacaacatatgataac 51  Q
    |||||||||||||||||||||||||||||    
T  3978244 cataccgtggactcacaacatatgataac 3978272  T

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Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 55953007 - 55953080
Alignment:
Q  23 cataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcat 96  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||  |||| ||||||||||    
T  55953007 cataccgtgaactcacaacatattataacttctattgtcatcttcttccctcctcatcttcatataaccttcat 55953080  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 44126799 - 44126871
Alignment:
Q  24 ataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcat 96  Q
    |||| |||||||||||||||||||||| || |||||||||||||||||||||||||  |||| ||||||||||    
T  44126799 atactgtggactcacaacatatgataatttatattgtcatcttcttccctcttcatcttcatataaccttcat 44126871  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 5688554 - 5688483
Alignment:
Q  22 gcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaacctt 93  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||  |||| |||||||    
T  5688554 gcatactgtggactcacaacatatgataacttttattgtcatcttcttccctattcatcttcatataacctt 5688483  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 37559197 - 37559271
Alignment:
Q  22 gcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcat 96  Q
    ||||||||||||||||||||||||||||||||| ||  |||||||||||| |||||||  |||| ||||||||||    
T  37559197 gcataccgtggactcacaacatatgataacttccatcttcatcttcttccatcttcatcttcatataaccttcat 37559271  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 33376426 - 33376492
Alignment:
Q  30 tggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcat 96  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||| |||  || | ||||||||||    
T  33376426 tggactcacaacataggatgacttctattgtcatcttcttccctctacatcttcgtataaccttcat 33376492  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 37560217 - 37560143
Alignment:
Q  22 gcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcat 96  Q
    |||||||||||||||||||| |||||||||||| ||  |||||||| ||| |||||||  |||| ||||||||||    
T  37560217 gcataccgtggactcacaacgtatgataacttccatcttcatcttcctccatcttcatcttcatataaccttcat 37560143  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 1273350 - 1273293
Alignment:
Q  22 gcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcat 79  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||||| |||||| |||||    
T  1273350 gcataccgtggtctcacaacataggataacttctattatcatcttgttcccttttcat 1273293  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 44128249 - 44128183
Alignment:
Q  30 tggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcat 96  Q
    ||||| ||||||||||||||| || | || ||||||||||||||||||||  |||| ||||||||||    
T  44128249 tggacacacaacatatgataatttatgttatcatcttcttccctcttcatcttcatataaccttcat 44128183  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 4373584 - 4373633
Alignment:
Q  30 tggactcacaacatatgataacttctattgtcatcttcttccctcttcat 79  Q
    |||||||||||||||| ||||| || | |||||||||| |||||||||||    
T  4373584 tggactcacaacatataataacctcgactgtcatcttcatccctcttcat 4373633  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 33377281 - 33377253
Alignment:
Q  22 gcataccgtggactcacaacatatgataa 50  Q
    |||||||||||||||||||||||||||||    
T  33377281 gcataccgtggactcacaacatatgataa 33377253  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 53400383 - 53400419
Alignment:
Q  22 gcataccgtggactcacaacatatgataacttctatt 58  Q
    |||||||||||||||||||||| |||||| |||||||    
T  53400383 gcataccgtggactcacaacatgtgataatttctatt 53400419  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 8412234 - 8412150
Alignment:
Q  21 agcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcatcaaccttcata 107  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||  |||| |||  |||||||| |||||||    
T  8412234 agcataccgtagactcacaacatacgataacttctattgtcatcttcttccctctccatcttcatataa--ttcatcaaacttcata 8412150  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 8411286 - 8411342
Alignment:
Q  23 cataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcat 79  Q
    ||||| ||| ||||||||||||  ||||||||||||||||||||||||||| |||||    
T  8411286 catacggtgtactcacaacatactataacttctattgtcatcttcttcccttttcat 8411342  T

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Target: scaffold0369 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 13103 - 13160
Alignment:
Q  22 gcataccgtggactcacaacatatgataacttctattgtcatcttcttccctcttcat 79  Q
    |||||| ||||||||| |||| |||||||||||||||||||| | | |||||||||||    
T  13103 gcatactgtggactcaaaacaaatgataacttctattgtcatttccatccctcttcat 13160  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 145780 - 145714
Alignment:
Q  30 tggactcacaacatatgataacttctattgtcatcttcttccctcttcattgtcatgtaaccttcat 96  Q
    ||||||||||||||||||||||||| ||  |||| ||||||| |||||||  || | ||||||||||    
T  145780 tggactcacaacatatgataacttccatgttcatattcttccatcttcatcttcctataaccttcat 145714  T

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