View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4871_high_7 (Length: 242)
Name: NF4871_high_7
Description: NF4871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4871_high_7 |
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| [»] scaffold0902 (1 HSPs) |
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| [»] scaffold1652 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold1176 (2 HSPs) |
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Alignment Details
Target: scaffold0902 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 24 - 224
Target Start/End: Complemental strand, 3797 - 3597
Alignment:
| Q |
24 |
ttggttacactgttgctgagttccgccgttgctagatcatcccccaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtgg |
123 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3797 |
ttggttgcactgttgctgagttccgccgttgctagatcatcccccaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtgg |
3698 |
T |
|
| Q |
124 |
cgtctcctccggtacctgtgaatagtgctccctcttcttcaccgactgcttcatctggttctcccgctgctgctcctgcttttgctccatcatcgatctc |
223 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| |||||||| |
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| T |
3697 |
cgtctcctccggtacctctgaatagtgctccctcttcttcaccaactgcttcatctggttctcccgctgctgctcctgctgtcactccatcgtcgatctc |
3598 |
T |
|
| Q |
224 |
t |
224 |
Q |
| |
|
| |
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|
| T |
3597 |
t |
3597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 24 - 232
Target Start/End: Original strand, 3 - 220
Alignment:
| Q |
24 |
ttggttacactgttgctgagttccgccgttgctagatca---------tcccccaagtcttctccgtttccatcacctgctatttctccctccgctgact |
114 |
Q |
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|||||| ||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3 |
ttggttgcactgtttctgagttccgccgttgctagatcaccaccatcatcacccaagtcttctccgtttccatcacctgctatttctccctccgctgact |
102 |
T |
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| Q |
115 |
caccagtggcgtctcctccggtacctgtgaatagtgctccctcttcttcaccgactgcttcatctggttctcccgctgctgctcctgcttttgctccatc |
214 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
103 |
caccagtggcgtctcctccggtaactgtgaatagtgctccctcttctttaacgactgcttcatctggttctcccgctgctgctcctgctgtctctccatc |
202 |
T |
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| Q |
215 |
atcgatctctgctcctcc |
232 |
Q |
| |
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||||||||| ||||||| |
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| T |
203 |
gtcgatctctactcctcc |
220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 59 - 192
Target Start/End: Original strand, 165080 - 165213
Alignment:
| Q |
59 |
atcatcccccaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctccggtacctgtgaatagtgctccctct |
158 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
165080 |
atcatccccccagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtcttctccggtacctctgaatagtgctccctct |
165179 |
T |
|
| Q |
159 |
tcttcaccgactgcttcatctggttctcccgctg |
192 |
Q |
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|||||||| |||||| ||||||||||| |||| |
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| T |
165180 |
ccttcaccgtctgctttctctggttctcctgctg |
165213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 59 - 192
Target Start/End: Complemental strand, 14248646 - 14248513
Alignment:
| Q |
59 |
atcatcccccaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctccggtacctgtgaatagtgctccctct |
158 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
14248646 |
atcatccccccagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtcttctccggtacctctgaatagtgctccctct |
14248547 |
T |
|
| Q |
159 |
tcttcaccgactgcttcatctggttctcccgctg |
192 |
Q |
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|||||||| |||||| ||||||||||| |||| |
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| T |
14248546 |
ccttcaccgtctgctttctctggttctcctgctg |
14248513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 14317165 - 14317055
Alignment:
| Q |
114 |
tcaccagtggcgtctcctccggtacctgtgaatagtgctccctcttcttcaccgactgcttcatctggttctcccgctgctgctcctgcttttgctccat |
213 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| ||||||||||| ||||| ||||||| | | ||||||| |
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| T |
14317165 |
tcaccagtggcgtctcctccggtacctctgaatagtgctccctctccttcaccgtctgcttcctctggttctcctgctgcagctcctgttgtcgctccat |
14317066 |
T |
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| Q |
214 |
catcgatctct |
224 |
Q |
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||| ||||||| |
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| T |
14317065 |
catggatctct |
14317055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 14317193 - 14317161
Alignment:
| Q |
59 |
atcatcccccaagtcttctccgtttccatcacc |
91 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
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| T |
14317193 |
atcatcacccaagtcttctccgtttccatcacc |
14317161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 233
Target Start/End: Complemental strand, 37257304 - 37257170
Alignment:
| Q |
99 |
tctccctccgctgactcaccagtggcgtctcctccggtacctgtgaatagtgctccctcttcttcaccgactgcttcatctggttctcccgctgctgctc |
198 |
Q |
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||||| ||||||| |||||| ||||| |||||||| ||||||||||| | ||||| ||| |||| || ||||||| |||| |||||||||| | ||| |
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| T |
37257304 |
tctccttccgctgtctcaccggtggcatctcctcccgtacctgtgaagaacgctccttctccttcccctcctgcttcctctgactctcccgctgtttctc |
37257205 |
T |
|
| Q |
199 |
ctgcttttgctccatcatcgatctctgctcctcct |
233 |
Q |
| |
|
||||| || |||||||||| |||||| || ||||| |
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| T |
37257204 |
ctgctgttactccatcatccatctctactactcct |
37257170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 37237871 - 37237814
Alignment:
| Q |
88 |
cacctgctatttctccctccgctgactcaccagtggcgtctcctccggtacctgtgaa |
145 |
Q |
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||||||| || |||||||||||||||||||| ||||| |||||||| ||||||||||| |
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| T |
37237871 |
cacctgcgatctctccctccgctgactcaccggtggcatctcctcccgtacctgtgaa |
37237814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 37245362 - 37245288
Alignment:
| Q |
59 |
atcatcccccaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctcc |
133 |
Q |
| |
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|||||| |||| || |||||||||||||||||| ||||||||||||||| ||||||||||||| ||| |||| |
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| T |
37245362 |
atcatcgcccatgttttctccgtttccatcaccaataatttctccctccgctaactcaccagtggcatctgctcc |
37245288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 37232851 - 37232787
Alignment:
| Q |
169 |
ctgcttcatctggttctcccgctgctgctcctgcttttgctccatcatcgatctctgctcctcct |
233 |
Q |
| |
|
||||||| |||||||| ||||| || ||||||||| || |||||||||||||||| |||||||| |
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| T |
37232851 |
ctgcttcctctggttcacccgccgccgctcctgctgttactccatcatcgatctccactcctcct |
37232787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 1265 - 1320
Alignment:
| Q |
61 |
catcccccaagtcttctccgtttccatcacctgctatttctccctccgctgactca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||| ||| ||||| |
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| T |
1265 |
catcccccaagtcttctccgtttccatctcctgcgatttctccctcagctaactca |
1320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 112 - 160
Alignment:
| Q |
184 |
ctcccgctgctgctcctgcttttgctccatcatcgatctctgctcctcc |
232 |
Q |
| |
|
|||| ||||||||||||||| | ||||||||||||||||| ||||||| |
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|
| T |
112 |
ctcctgctgctgctcctgctgtgactccatcatcgatctctactcctcc |
160 |
T |
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