View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4871_low_2 (Length: 404)
Name: NF4871_low_2
Description: NF4871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4871_low_2 |
 | |
|
| [»] scaffold0029 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 31252625 - 31253004
Alignment:
| Q |
18 |
tttatatcaaacaccacaacagtatggtgtgtggagcaattattttctttccttgttaactttttattgttttattcttatcaaatttgtttgatcccat |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31252625 |
tttatatcaaacacctcaacagtatggtgtgtggagcaattattttctttccttgttaactttttattgttttattcttatcaaatttgtttgatcccat |
31252724 |
T |
|
| Q |
118 |
tcactaatttatgtacattaatgatgcaggttttatttccgataaggtcgagattttgaaagcatgttgtggaggaagtggaccatatcatcatgatgag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31252725 |
tcactaatttatgtacattaatgatgcaggttttatttctgataaggtcgagattttgaaagcatgttgtggaggaagtggaccatatcatcatgatgag |
31252824 |
T |
|
| Q |
218 |
tattggtgtggaacgccgaatacaacagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31252825 |
tattggtgtggaacgccgaatacaacagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatag |
31252924 |
T |
|
| Q |
318 |
ctaaaggattaatcgaaggcccttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattgatgatgt |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31252925 |
ctaaaggattaatcgaaggcccttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattgatgatgt |
31253004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 13002961 - 13002582
Alignment:
| Q |
18 |
tttatatcaaacaccacaacagtatggtgtgtggagcaattattttctttccttgttaactttttattgttttattcttatcaaatttgtttgatcccat |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13002961 |
tttatatcaaacaccacaacaatatggtgtgtggagcaattattttctttccttgttaactttttattgtttaattcttatcaaatttgtttgatcccat |
13002862 |
T |
|
| Q |
118 |
tcactaatttatgtacattaatgatgcaggttttatttccgataaggtcgagattttgaaagcatgttgtggaggaagtggaccatatcatcatgatgag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13002861 |
tcactaatttatgtacattaatgatgcaggttttatttctgataaggtcgagattttgaaagcatgttgtggaggaagtggaccatatcatcatgatgag |
13002762 |
T |
|
| Q |
218 |
tattggtgtggaacgccgaatacaacagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13002761 |
tattggtgtggaacgccgaatacaacagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatag |
13002662 |
T |
|
| Q |
318 |
ctaaaggattaatcgaaggcccttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattgatgatgt |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13002661 |
ctaaaggattaatcgaaggcccttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattgatgatgt |
13002582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 31093761 - 31093382
Alignment:
| Q |
18 |
tttatatcaaacaccacaacagtatggtgtgtggagcaattattttctttccttgttaactttttattgttttattcttatcaaatttgtttgatcccat |
117 |
Q |
| |
|
|||||||||| |||||||||| ||||||| ||||||| |||||||||||||| |||||| |||| |||| ||||| |||||||||||| ||||||||||| |
|
|
| T |
31093761 |
tttatatcaagcaccacaacaatatggtgcgtggagccattattttctttccatgttaagttttcattgatttatacttatcaaatttatttgatcccat |
31093662 |
T |
|
| Q |
118 |
tcactaatttatgtacattaatgatgcaggttttatttccgataaggtcgagattttgaaagcatgttgtggaggaagtggaccatatcatcatgatgag |
217 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
31093661 |
gcactaatttctgttcattaatgatgcaggttttatttctgataaagtcgaaattttgaaagcatgttgcggaggaagtggaccatatcatcatgatcag |
31093562 |
T |
|
| Q |
218 |
tattggtgtggaacgccgaatacaacagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatag |
317 |
Q |
| |
|
||| ||||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||||| | || ||||||||||||||||||||||| |||| |
|
|
| T |
31093561 |
aatttttgtggaacgtcgaatacaacaatttgctccgatccttcaaaactattaaattgggatggtcaacactttaccgaagccgcttataagcatatag |
31093462 |
T |
|
| Q |
318 |
ctaaaggattaatcgaaggcccttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattgatgatgt |
397 |
Q |
| |
|
||||| | ||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31093461 |
ctaaatgtttagtggaaggctcttttgcatatccttctctaaaacctgctcctttcaagatagcttagaatcgatgatgt |
31093382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 18 - 396
Target Start/End: Original strand, 16163315 - 16163695
Alignment:
| Q |
18 |
tttatatcaaacaccacaacagtatggtgtgtggagcaattattttctttccttgttaactttttattgttttattcttatcaaatttgtttgatcccat |
117 |
Q |
| |
|
||||||| || |||||||||| |||||| ||||||||||||||||| ||||||||||| ||| ||| ||||||||| ||||||| ||||||||||| |
|
|
| T |
16163315 |
tttatatgaagcaccacaacaatatggtctgtggagcaattattttacttccttgttaagtttacatttatttattcttgacaaatttatttgatcccat |
16163414 |
T |
|
| Q |
118 |
--tcactaatttatgtacattaatgatgcaggttttatttccgataaggtcgagattttgaaagcatgttgtggaggaagtggaccatatcatcatgatg |
215 |
Q |
| |
|
|||||| ||||||| ||||||||||| ||| |||| ||| |||||||||||| |||||||||||||||||||||||| ||||||||| || | ||| | |
|
|
| T |
16163415 |
cctcactagtttatgtgcattaatgatgtaggctttacttctgataaggtcgaggttttgaaagcatgttgtggaggaattggaccataccaccgtgacg |
16163514 |
T |
|
| Q |
216 |
agtattggtgtggaacgccgaatacaacagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaat |
315 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||| || ||||||||||| |
|
|
| T |
16163515 |
ctaattggtgtggaatgcctggtacaacagtttgctctgatccttcaaaactaataaattttgatggacctcacttaaccgaagcagcatataagcaaat |
16163614 |
T |
|
| Q |
316 |
agctaaaggattaatcgaaggcccttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattgatgatg |
396 |
Q |
| |
|
||| ||||| ||||| ||||| |||||||| |||| || |||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
16163615 |
agccaaaggtttaattgaaggttcttttgcaaatccatccctaaaacctgctgctttcaagatagtctagaattgatgatg |
16163695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 396
Target Start/End: Original strand, 27206654 - 27207023
Alignment:
| Q |
18 |
tttatatcaaacaccacaacagtatggtgtgtggagcaattattttctttccttgttaactttttattgttttattcttatcaaatttgtttgatcccat |
117 |
Q |
| |
|
|||||| ||| ||||| |||| ||||| ||||||||||||||||||||||||| ||| || |||| | ||||||| |||||||| |||| | |||| |
|
|
| T |
27206654 |
tttataccaagcaccagaacaatatgg-gtgtggagcaattattttctttcctggtttac-----attgatctattcttgtcaaatttatttgtttccat |
27206747 |
T |
|
| Q |
118 |
tcactaatttatgtacattaatgatgcaggttttatttccgataaggtcgagattttgaaagcatgttgtggaggaagtggaccatatcatcatgatgag |
217 |
Q |
| |
|
|||||| || || || ||| |||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
27206748 |
gcactaactt---tatatcaataatgcaggttttactttggataacgtcgagattttgaaagcatgttgtggaggaagtggaccataccattttgatgat |
27206844 |
T |
|
| Q |
218 |
tattggtgtggaacgccgaatacaacagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatag |
317 |
Q |
| |
|
|| |||||| || || ||||||| |||||||||||||||| ||||||||||||||||||||||| || ||||| ||||| ||| |||| |||||| |
|
|
| T |
27206845 |
cttttttgtggatggcagagtacaacaatttgctctgatccttcgaaactaataaattgggatggaccgcactttactgaagcagctcataaacaaataa |
27206944 |
T |
|
| Q |
318 |
ctaaaggattaatcgaaggcccttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattgatgatg |
396 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
27206945 |
ctaaaggtttaatcgaaggccattttgcaaatccttctctaaaacccgctcctttcaagatagtttagaattgatgatg |
27207023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 25658831 - 25658910
Alignment:
| Q |
125 |
tttatgtacattaatgatgcaggttttatttccgataaggtcgagattttgaaagcatgttgtggaggaagtggaccata |
204 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25658831 |
tttatgtaaattaatgatgcaggttttatttctgataaggaagagattttgaaagcatgttgtggaggaagtggaccata |
25658910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 25665236 - 25665315
Alignment:
| Q |
125 |
tttatgtacattaatgatgcaggttttatttccgataaggtcgagattttgaaagcatgttgtggaggaagtggaccata |
204 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25665236 |
tttatgtaaattaatgatgcaggttttatttctgataaggaagagattttgaaagcatgttgtggaggaagtggaccata |
25665315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 25671641 - 25671720
Alignment:
| Q |
125 |
tttatgtacattaatgatgcaggttttatttccgataaggtcgagattttgaaagcatgttgtggaggaagtggaccata |
204 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25671641 |
tttatgtaaattaatgatgcaggttttatttctgataaggaagagattttgaaagcatgttgtggaggaagtggaccata |
25671720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 25678046 - 25678125
Alignment:
| Q |
125 |
tttatgtacattaatgatgcaggttttatttccgataaggtcgagattttgaaagcatgttgtggaggaagtggaccata |
204 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25678046 |
tttatgtaaattaatgatgcaggttttatttctgataaggaagagattttgaaagcatgttgtggaggaagtggaccata |
25678125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 25684722 - 25684801
Alignment:
| Q |
125 |
tttatgtacattaatgatgcaggttttatttccgataaggtcgagattttgaaagcatgttgtggaggaagtggaccata |
204 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25684722 |
tttatgtaaattaatgatgcaggttttatttctgataaggaagagattttgaaagcatgttgtggaggaagtggaccata |
25684801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 27229419 - 27229488
Alignment:
| Q |
125 |
tttatgtacattaatgatgcaggttttatttccgataaggtcgagattttgaaagcatgttgtggaggaa |
194 |
Q |
| |
|
||||||||||||||| ||||||| |||| ||| ||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
27229419 |
tttatgtacattaatcatgcaggctttacttctgataaggtcaagattatgcaagcatgttgtggaggaa |
27229488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 390
Target Start/End: Original strand, 25658949 - 25659099
Alignment:
| Q |
240 |
caacagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggccc |
339 |
Q |
| |
|
||||||||||| | || ||||||||| |||||||||||||| | || || || ||||| | |||||| |||||| || ||| || | |||||||| |
|
|
| T |
25658949 |
caacagtttgccccgacccttcaaaatatataaattgggatggctcacacttaactgaagcatcatataagttaatagcaaagggactagttgaaggccc |
25659048 |
T |
|
| Q |
340 |
ttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattg |
390 |
Q |
| |
|
||||||| ||||||| || ||| || ||| |||||| |||||||||||||| |
|
|
| T |
25659049 |
ttttgcaaatccttcccttaaaactcctcttttcaatatagcttagaattg |
25659099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 390
Target Start/End: Original strand, 25665354 - 25665504
Alignment:
| Q |
240 |
caacagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggccc |
339 |
Q |
| |
|
||||||||||| | || ||||||||| |||||||||||||| | || || || ||||| | |||||| |||||| || ||| || | |||||||| |
|
|
| T |
25665354 |
caacagtttgccccgacccttcaaaatatataaattgggatggctcacacttaactgaagcatcatataagttaatagcaaagggactagttgaaggccc |
25665453 |
T |
|
| Q |
340 |
ttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattg |
390 |
Q |
| |
|
||||||| ||||||| || ||| || ||| |||||| |||||||||||||| |
|
|
| T |
25665454 |
ttttgcaaatccttcccttaaaactcctcttttcaatatagcttagaattg |
25665504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 390
Target Start/End: Original strand, 25671759 - 25671909
Alignment:
| Q |
240 |
caacagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggccc |
339 |
Q |
| |
|
||||||||||| | || ||||||||| |||||||||||||| | || || || ||||| | |||||| |||||| || ||| || | |||||||| |
|
|
| T |
25671759 |
caacagtttgccccgacccttcaaaatatataaattgggatggctcacacttaactgaagcatcatataagttaatagcaaagggactagttgaaggccc |
25671858 |
T |
|
| Q |
340 |
ttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattg |
390 |
Q |
| |
|
||||||| ||||||| || ||| || ||| |||||| |||||||||||||| |
|
|
| T |
25671859 |
ttttgcaaatccttcccttaaaactcctcttttcaatatagcttagaattg |
25671909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 390
Target Start/End: Original strand, 25678164 - 25678314
Alignment:
| Q |
240 |
caacagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggccc |
339 |
Q |
| |
|
||||||||||| | || ||||||||| |||||||||||||| | || || || ||||| | |||||| |||||| || ||| || | |||||||| |
|
|
| T |
25678164 |
caacagtttgccccgacccttcaaaatatataaattgggatggctcacacttaactgaagcatcatataagttaatagcaaagggactagttgaaggccc |
25678263 |
T |
|
| Q |
340 |
ttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattg |
390 |
Q |
| |
|
||||||| ||||||| || ||| || ||| |||||| |||||||||||||| |
|
|
| T |
25678264 |
ttttgcaaatccttcccttaaaactcctcttttcaatatagcttagaattg |
25678314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 390
Target Start/End: Original strand, 25684840 - 25684990
Alignment:
| Q |
240 |
caacagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggccc |
339 |
Q |
| |
|
||||||||||| | || ||||||||| |||||||||||||| | || || || ||||| | |||||| |||||| || ||| || | |||||||| |
|
|
| T |
25684840 |
caacagtttgccccgacccttcaaaatatataaattgggatggctcacacttaactgaagcatcatataagttaatagcaaagggactagttgaaggccc |
25684939 |
T |
|
| Q |
340 |
ttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattg |
390 |
Q |
| |
|
||||||| ||||||| || ||| || ||| |||||| |||||||||||||| |
|
|
| T |
25684940 |
ttttgcaaatccttcccttaaaactcctcttttcaatatagcttagaattg |
25684990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 323
Target Start/End: Original strand, 27229557 - 27229617
Alignment:
| Q |
263 |
aaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatagctaaag |
323 |
Q |
| |
|
||| ||||||||| ||||||| |||| ||||||||||| ||| ||||||||||||| |||| |
|
|
| T |
27229557 |
aaattaataaattaggatggatcccactttaccgaagcagctcataagcaaatagcaaaag |
27229617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 242 - 386
Target Start/End: Complemental strand, 43186 - 43042
Alignment:
| Q |
242 |
acagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggccctt |
341 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||| || ||||| ||||| |||||||||| |||||| ||||| || | || || || | |
|
|
| T |
43186 |
acagtttgctctgatccttcaaaacgtataaattgggacggaccacactttactgaagcagcttataagctaatagcaaaagggctagttgagggtccat |
43087 |
T |
|
| Q |
342 |
ttgcatatccttctctaaaacctgctcctttcaagatagcttaga |
386 |
Q |
| |
|
|| || |||||||||| ||| | ||| |||||| |||||||||| |
|
|
| T |
43086 |
tttcaaatccttctcttaaatcccctcttttcaaaatagcttaga |
43042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 324
Target Start/End: Complemental strand, 18174 - 18092
Alignment:
| Q |
242 |
acagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatagctaaagg |
324 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||| || ||||| ||||| |||||||||| |||||| ||||| |
|
|
| T |
18174 |
acagtttgctctgatccttcaaaacgtataaattgggacggaccacactttactgaagcagcttataagctaatagcaaaagg |
18092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 242 - 386
Target Start/End: Complemental strand, 33130162 - 33130018
Alignment:
| Q |
242 |
acagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggccctt |
341 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||| || ||||| ||||| |||||||||| |||||| ||||| || | || || || | |
|
|
| T |
33130162 |
acagtttgctctgatccttcaaaacgtataaattgggacggacctcactttactgaagcagcttataagctaatagcaaaagggctagttgagggtccat |
33130063 |
T |
|
| Q |
342 |
ttgcatatccttctctaaaacctgctcctttcaagatagcttaga |
386 |
Q |
| |
|
|| || |||||||||| ||| | ||| |||||| |||||||||| |
|
|
| T |
33130062 |
tttcaaatccttctcttaaatcccctcttttcaaaatagcttaga |
33130018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 386
Target Start/End: Complemental strand, 33120417 - 33120275
Alignment:
| Q |
244 |
agtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggccctttt |
343 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| ||||| || ||||| ||||| |||||||||| |||||| ||||| || | || || || ||| |
|
|
| T |
33120417 |
agtttgctctgatccttcaaatcgtataaattgggacggacctcactttactgaagcagcttataagctaatagcaaaagggctagttgagggtccattt |
33120318 |
T |
|
| Q |
344 |
gcatatccttctctaaaacctgctcctttcaagatagcttaga |
386 |
Q |
| |
|
|| |||||||||| ||| | ||| |||||| |||||||||| |
|
|
| T |
33120317 |
tcaaatccttctcttaaatcccctcttttcaaaatagcttaga |
33120275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 352
Target Start/End: Original strand, 19113240 - 19113353
Alignment:
| Q |
239 |
acaacagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggcc |
338 |
Q |
| |
|
||||| |||||||| || ||||| ||| |||||||||||||||||||| |||| ||||| || |||| ||||||||| |||||| || | ||||| | |
|
|
| T |
19113240 |
acaactgtttgctccgacccttctaaatatataaattgggatggaccccaccttacagaagcagcatataggcaaatagcaaaaggactagttgaaggtc |
19113339 |
T |
|
| Q |
339 |
cttttgcatatcct |
352 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
19113340 |
cttttgcaaatcct |
19113353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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