View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4871_low_6 (Length: 269)

Name: NF4871_low_6
Description: NF4871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4871_low_6
NF4871_low_6
[»] chr6 (3 HSPs)
chr6 (29-260)||(14316691-14316922)
chr6 (30-260)||(14253963-14254190)
chr6 (44-260)||(14248153-14248372)
[»] scaffold1652 (1 HSPs)
scaffold1652 (2-260)||(402-660)
[»] scaffold0902 (1 HSPs)
scaffold0902 (31-260)||(3209-3441)
[»] scaffold1176 (2 HSPs)
scaffold1176 (2-260)||(183-441)
scaffold1176 (2-118)||(1300-1416)
[»] scaffold1801 (1 HSPs)
scaffold1801 (28-260)||(93-337)
[»] chr4 (12 HSPs)
chr4 (13-104)||(37241996-37242087)
chr4 (2-104)||(37245019-37245121)
chr4 (146-258)||(37244886-37244998)
chr4 (5-104)||(37253101-37253200)
chr4 (191-255)||(37252947-37253011)
chr4 (185-260)||(37232696-37232771)
chr4 (5-53)||(37237812-37237860)
chr4 (190-260)||(37237611-37237681)
chr4 (190-260)||(37257067-37257137)
chr4 (5-112)||(37232844-37232951)
chr4 (2-39)||(37245288-37245325)
chr4 (5-53)||(37257256-37257304)


Alignment Details
Target: chr6 (Bit Score: 176; Significance: 7e-95; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 29 - 260
Target Start/End: Complemental strand, 14316922 - 14316691
Alignment:
Q  29 gcatctgctcccgtgcctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcctcctcaagcttcccccgcagccactcctt 128  Q
    |||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||      
T  14316922 gcatctgctcccgtacctgtgaagagcagtccttctatttcaccgtctgccatcaactctccatcatctcctcctcaagcttcccccgcagccactccgg 14316823  T
Q  129 ccatcactccatcatcgatctctaccactccttcaatagcaccatcaacgtccacgaacgacgccgctttgaacagatttaccattgccggatctgctgc 228  Q
    |||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14316822 ccatcactccatcatcgatctctacccctccttctaaagcaccatcaacgtccacgaacgacgccgctttgaacagatttacccttgccggatctgctgc 14316723  T
Q  229 tgccgtggttttcactgctgctttgatgatgt 260  Q
    || |||||||||| ||||||||||||||||||    
T  14316722 tgtcgtggttttcgctgctgctttgatgatgt 14316691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 30 - 260
Target Start/End: Complemental strand, 14254190 - 14253963
Alignment:
Q  30 catctgctcccgtgcctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcctcctcaagcttcccccgcagccactccttc 129  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||   || |  ||||||||||||| || ||||| |||||| |    
T  14254190 catctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctc---caccatctcctcaagcttcacctgcagctactcctgc 14254094  T
Q  130 catcactccatcatcgatctctaccactccttcaatagcaccatcaacgtccacgaacgacgccgctttgaacagatttaccattgccggatctgctgct 229  Q
     || |||||||| |||||||||| | |||| || | || ||||||||||||||| ||||||||||||||||||||||||||  |||| ||||||||||||    
T  14254093 tattactccatcgtcgatctctatccctccatctaaagtaccatcaacgtccacaaacgacgccgctttgaacagatttacagttgctggatctgctgct 14253994  T
Q  230 gccgtggttttcactgctgctttgatgatgt 260  Q
    | |||||||||| ||||||||||||||||||    
T  14253993 gtcgtggttttcgctgctgctttgatgatgt 14253963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 44 - 260
Target Start/End: Complemental strand, 14248372 - 14248153
Alignment:
Q  44 cctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcctcctcaagcttcccccgcagccactccttccatcactccatcat 143  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||| | || ||||||||      
T  14248372 cctgtgaagagcagtccttctccttcaccgtctgccatcaactctccatcatctcctcctcaagctttccccgcagccactcctgcaattactccatcgg 14248273  T
Q  144 cgatctctaccactccttcaatagcaccatcaacgtccacgaa---cgacgccgctttgaacagatttaccattgccggatctgctgctgccgtggtttt 240  Q
    ||||||||||| |||| || | |||||||||||||||||| ||   || |||||||||||||||||||||  ||||||||||| |||||| |||||||||    
T  14248272 cgatctctacccctccatctaaagcaccatcaacgtccacaaacgccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggtttt 14248173  T
Q  241 cactgctgctttgatgatgt 260  Q
       |||||||||||||||||    
T  14248172 tgttgctgctttgatgatgt 14248153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 2 - 260
Target Start/End: Original strand, 402 - 660
Alignment:
Q  2 atttctccctccgctcactcaccggtggcatctgctcccgtgcctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcctc 101  Q
    ||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||   || |  |||    
T  402 atttctccctccgctaactcaacggtggcatctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctc---caccatctc 498  T
Q  102 ctcaagcttcccccgcagccactccttccatcactccatcatcgatctctaccactccttcaatagcaccatcaacgtccacgaac---gacgccgcttt 198  Q
    |||||||||||||||||||||||||| | || ||||||||  ||||||||||| | || || | |||||||||||||||||| |||   | | || ||||    
T  499 ctcaagcttcccccgcagccactcctgctattactccatcggcgatctctaccccaccatctaaagcaccatcaacgtccacaaacgctgccaccacttt 598  T
Q  199 gaacagatttaccattgccggatctgctgctgccgtggttttcactgctgctttgatgatgt 260  Q
    ||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||    
T  599 gaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgatgatgt 660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 31 - 260
Target Start/End: Complemental strand, 3441 - 3209
Alignment:
Q  31 atctgctcccgtgcctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcctcctcaagcttcccccgcagccactccttcc 130  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||   ||||||||||||| |||||||| |||||| ||||| ||    
T  3441 atctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctccaccatctcctcctcatgcttccccagcagccgctcctgcc 3342  T
Q  131 atcactccatcatcgatctctaccactccttcaatagcaccatcaacgtccacgaac---gacgccgctttgaacagatttaccattgccggatctgctg 227  Q
    || ||||||||  ||||||||||| |||| || | |||||||||||| | ||| |||   | | |||||||||||||||||||  |||||||||||||||    
T  3341 attactccatcggcgatctctacccctccatctaaagcaccatcaacattcacaaacgctggcaccgctttgaacagatttacagttgccggatctgctg 3242  T
Q  228 ctgccgtggttttcactgctgctttgatgatgt 260  Q
    ||| |||||||||||| ||||||||||||||||    
T  3241 ctgtcgtggttttcacggctgctttgatgatgt 3209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 2 - 260
Target Start/End: Original strand, 183 - 441
Alignment:
Q  2 atttctccctccgctcactcaccggtggcatctgctcccgtgcctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcctc 101  Q
    ||||||||||| ||| ||||| | | ||| |||||||| |  |||||||||||||||||||| |||||||| |||||||||||||||    |||   |||    
T  183 atttctccctcagctaactcaaccgcggcgtctgctcctgaacctgtgaagagcagtccttctccttcaccatctgccatcaactctagaccat---ctc 279  T
Q  102 ctcaagcttcccccgcagccactccttccatcactccatcatcgatctctaccactccttcaatagcaccatcaacgtccacgaacga---cgccgcttt 198  Q
    |||||||||||||||||||||| ||| | || |||||||| || ||||||||| |||| || | |||||||||||||||||| |||||   |||||||||    
T  280 ctcaagcttcccccgcagccacccctgctattactccatcgtccatctctacccctccatctaaagcaccatcaacgtccacaaacgacgccgccgcttt 379  T
Q  199 gaacagatttaccattgccggatctgctgctgccgtggttttcactgctgctttgatgatgt 260  Q
    ||||||||||||  ||||||||||| |||||| ||||||||||| |||||||||||||||||    
T  380 gaacagatttacagttgccggatctactgctgtcgtggttttcattgctgctttgatgatgt 441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 1300 - 1416
Alignment:
Q  2 atttctccctccgctcactcaccggtggcatctgctcccgtgcctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcctc 101  Q
    ||||||||||| ||| ||||| ||| ||||| |||||  || |||||||||||||||||||| |||||||||| ||||||||||| ||   |||||||||    
T  1300 atttctccctcagctaactcaacggcggcatatgctcgtgtacctgtgaagagcagtccttctccttcaccgtgtgccatcaactgtccaccatctcctc 1399  T
Q  102 ctcaagcttcccccgca 118  Q
    |||| ||||||||||||    
T  1400 ctcatgcttcccccgca 1416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1801 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 28 - 260
Target Start/End: Original strand, 93 - 337
Alignment:
Q  28 ggcatctgctcccgtgcctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcctcctcaagcttcccccgcagccactcct 127  Q
    |||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||    |||||||||||| ||||| || |||||  |||||    
T  93 ggcatctgctcctgttcctgtgaagagcagtccttctccttcaccgtctgccatcaactctccacaatctcctcctcatgcttcgccagcagctgctcct 192  T
Q  128 tccatcactccatcatcgatctctaccactccttcaatagcaccatca---------acgtccacgaac---gacgccgctttgaacagatttaccattg 215  Q
     |||| |||||||| |||||||||||| |||| || | |||| |||||         || ||||| |||   |  ||||||||||||||||||||  |||    
T  193 gccattactccatcgtcgatctctacccctccatctaaagcatcatcaacatcacagacatccacaaacgctgctgccgctttgaacagatttacagttg 292  T
Q  216 ccggatctgctgctgccgtggttttcactgctgctttgatgatgt 260  Q
    ||||||||||||||| |||  |||| |||||||||||||||||||    
T  293 ccggatctgctgctgtcgtccttttaactgctgctttgatgatgt 337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 37242087 - 37241996
Alignment:
Q  13 cgctcactcaccggtggcatctgctcccgtgcctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcctcctc 104  Q
    |||| ||||||||||||||||| ||||||| ||||| | |||||||||||| ||||||||||| |||||||||||||   ||||||||||||    
T  37242087 cgctaactcaccggtggcatcttctcccgtacctgtaacgagcagtccttctccttcaccgtccgccatcaactctccaccatctcctcctc 37241996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 37245121 - 37245019
Alignment:
Q  2 atttctccctccgctcactcaccggtggcatctgctcccgtgcctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcctc 101  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||| |||||| || ||||||||  ||| ||||||||   |||||||||    
T  37245121 atttctccctccgctaactcaacggcggcatctgctcccgtgcctgcgaagagcattccttctccatcaccgtccaccaacaactctccaccatctcctc 37245022  T
Q  102 ctc 104  Q
    |||    
T  37245021 ctc 37245019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 258
Target Start/End: Complemental strand, 37244998 - 37244886
Alignment:
Q  146 atctctaccactccttcaatagcaccatcaacgtccacgaacgacgccgctttgaacagatttaccattgccggatctgctgctgccgtggttttcactg 245  Q
    ||||||||| |||| || | | |||||||||| ||||| |||| ||||||||| |||||||| ||  ||||||||||||||||||  ||||||||| |||    
T  37244998 atctctacccctccatctaaatcaccatcaacatccacaaacggcgccgctttcaacagattcactgttgccggatctgctgctgttgtggttttcgctg 37244899  T
Q  246 ctgctttgatgat 258  Q
    ||| |||||||||    
T  37244898 ctgttttgatgat 37244886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 37253200 - 37253101
Alignment:
Q  5 tctccctccgctcactcaccggtggcatctgctcccgtgcctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcctcctc 104  Q
    |||||||||||| ||||||||| ||||||||||||| | |||||||||| |  ||| || |||||||| || |||||||||||||   ||||||||||||    
T  37253200 tctccctccgctgactcaccggcggcatctgctcccatacctgtgaagaacgctccatctccttcaccttcagccatcaactctccaccatctcctcctc 37253101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 37253011 - 37252947
Alignment:
Q  191 gccgctttgaacagatttaccattgccggatctgctgctgccgtggttttcactgctgctttgat 255  Q
    ||||||||||||||||||||| ||||||||||||||||||  ||||||||| | || ||||||||    
T  37253011 gccgctttgaacagatttaccgttgccggatctgctgctgtagtggttttcgccgccgctttgat 37252947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 37232771 - 37232696
Alignment:
Q  185 aacgacgccgctttgaacagatttaccattgccggatctgctgctgccgtggttttcactgctgctttgatgatgt 260  Q
    |||| |||||||||||| ||||| ||| ||||||||||||||||||  ||| ||||| |||| |||||||||||||    
T  37232771 aacggcgccgctttgaatagattcaccgttgccggatctgctgctgttgtgattttcgctgccgctttgatgatgt 37232696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 37237860 - 37237812
Alignment:
Q  5 tctccctccgctcactcaccggtggcatctgctcccgtgcctgtgaaga 53  Q
    |||||||||||| ||||||||||||||||| ||||||| ||||||||||    
T  37237860 tctccctccgctgactcaccggtggcatctcctcccgtacctgtgaaga 37237812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 37237681 - 37237611
Alignment:
Q  190 cgccgctttgaacagatttaccattgccggatctgctgctgccgtggttttcactgctgctttgatgatgt 260  Q
    |||||| ||||||||||| ||| |||||| |||||||||||| || |||||  |||| |||||||||||||    
T  37237681 cgccgcattgaacagattcacctttgccgtatctgctgctgctgttgtttttgctgcagctttgatgatgt 37237611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 37257137 - 37257067
Alignment:
Q  190 cgccgctttgaacagatttaccattgccggatctgctgctgccgtggttttcactgctgctttgatgatgt 260  Q
    ||||||||| |||||||| ||| |||| |||||||||||||   |||||||| | ||||||||||||||||    
T  37257137 cgccgcttttaacagattcaccgttgctggatctgctgctgttatggttttcgccgctgctttgatgatgt 37257067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 37232951 - 37232844
Alignment:
Q  5 tctccctccgctcactcaccggtggcatctgctcccgtgcctgtgaagagcagtccttcgccttcaccgtctgccatcaactctcagtcatctcctcctc 104  Q
    ||||||||||||||||||||||  |||||| ||||||  ||||||||||    ||| || ||||| || || |||||||||||||   ||||||||||||    
T  37232951 tctccctccgctcactcaccggctgcatctcctcccgcacctgtgaagaattctccatctccttcgccatccgccatcaactctccaccatctcctcctc 37232852  T
Q  105 aagcttcc 112  Q
      ||||||    
T  37232851 ctgcttcc 37232844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 37245325 - 37245288
Alignment:
Q  2 atttctccctccgctcactcaccggtggcatctgctcc 39  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  37245325 atttctccctccgctaactcaccagtggcatctgctcc 37245288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 37257304 - 37257256
Alignment:
Q  5 tctccctccgctcactcaccggtggcatctgctcccgtgcctgtgaaga 53  Q
    ||||| ||||||  |||||||||||||||| ||||||| ||||||||||    
T  37257304 tctccttccgctgtctcaccggtggcatctcctcccgtacctgtgaaga 37257256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University