View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4871_low_8 (Length: 250)
Name: NF4871_low_8
Description: NF4871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4871_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 43534028 - 43534260
Alignment:
| Q |
16 |
ttatcatcttgttcaacaaattatatatccatagtagttattgactaagatacttgttgaaagtactaatcaagcttgacctttgttcctaaattttcag |
115 |
Q |
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| T |
43534028 |
ttatcatcttgttccacaaattatatatccatagtagttattgactaagatacttgttgaaagtactaatcaagtttgacctttgttcctaaattttcag |
43534127 |
T |
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| Q |
116 |
tatcaatgggtattgtcaccttatatatctctgcaagagagcgatacttcttcgccttctttggtttaaaaatcttactgctcatattattattaggttt |
215 |
Q |
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| T |
43534128 |
tatcaatgggtattgtcaccttatatatctctgcaagagagcgatacttcttcgccttctttggtttaaaaatcttattgctcatattattattaggttt |
43534227 |
T |
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| Q |
216 |
ttgatcaacctcttcacttgagattcttctctc |
248 |
Q |
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| T |
43534228 |
ttgatcaacctcttcacttgagattcttttctc |
43534260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 43531741 - 43531936
Alignment:
| Q |
19 |
tcatcttgttcaacaaattatatatccatagtagttattgactaagatacttgttgaaagtactaatcaagcttgacctttgttcctaaattttcagtat |
118 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43531741 |
tcatctggttcaacaaattatatatccatagt---tattgactaagatacatgttgaaagtactaatcaagcttaacctttgttcctaaattttcagtat |
43531837 |
T |
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| Q |
119 |
caatgggtattgtcaccttatatatctctgcaagagagcgatacttcttcgccttctttggtttaaaaatcttactgctcatattattattaggtttttg |
218 |
Q |
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| T |
43531838 |
caatgggta---tcaccttatatgtatttgcaagagagcgatacttctttgccttctttggtttaaaaatcttattgctcttattattattggatttttg |
43531934 |
T |
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