View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4872_high_13 (Length: 300)

Name: NF4872_high_13
Description: NF4872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4872_high_13
NF4872_high_13
[»] chr5 (3 HSPs)
chr5 (3-162)||(38816773-38816932)
chr5 (138-182)||(19820459-19820503)
chr5 (138-182)||(22013364-22013408)
[»] scaffold1371 (1 HSPs)
scaffold1371 (238-270)||(1558-1590)
[»] chr7 (3 HSPs)
chr7 (238-270)||(9670725-9670757)
chr7 (138-182)||(27944991-27945035)
chr7 (138-182)||(40132025-40132069)
[»] chr8 (2 HSPs)
chr8 (137-180)||(40332154-40332197)
chr8 (138-182)||(25192412-25192456)
[»] chr6 (1 HSPs)
chr6 (138-182)||(8365584-8365628)
[»] chr2 (1 HSPs)
chr2 (138-182)||(20539739-20539783)
[»] chr1 (1 HSPs)
chr1 (138-182)||(5927405-5927449)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 3 - 162
Target Start/End: Complemental strand, 38816932 - 38816773
Alignment:
Q  3 caacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatattgtttgtatcattgcttgaattgaagcaataat 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38816932 caacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatattgtttgtatcattgtttgaattgaagcaataat 38816833  T
Q  103 ttgagaaaatagaataattgaacggtaaccatatactatgaagcacgaatacggactccg 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38816832 ttgagaaaatagaataattgaacggtaaccatatactatgaagcactaatacggactccg 38816773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 19820503 - 19820459
Alignment:
Q  138 ctatgaagcacgaatacggactccggacacggcacggacactgac 182  Q
    |||||||||||| |||||||| ||||||||| |||||||||||||    
T  19820503 ctatgaagcacggatacggacaccggacacgacacggacactgac 19820459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 22013364 - 22013408
Alignment:
Q  138 ctatgaagcacgaatacggactccggacacggcacggacactgac 182  Q
    |||||||||||| |||||||| ||||||||| |||||||||||||    
T  22013364 ctatgaagcacggatacggacaccggacacgacacggacactgac 22013408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1371 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1371
Description:

Target: scaffold1371; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 270
Target Start/End: Original strand, 1558 - 1590
Alignment:
Q  238 agtggcagttcagcttttgcaggattttgtcat 270  Q
    |||||||||||||||||||||||||||||||||    
T  1558 agtggcagttcagcttttgcaggattttgtcat 1590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 270
Target Start/End: Complemental strand, 9670757 - 9670725
Alignment:
Q  238 agtggcagttcagcttttgcaggattttgtcat 270  Q
    |||||||||||||||||||||||||||||||||    
T  9670757 agtggcagttcagcttttgcaggattttgtcat 9670725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 27944991 - 27945035
Alignment:
Q  138 ctatgaagcacgaatacggactccggacacggcacggacactgac 182  Q
    |||||||||||| |||||||| ||||||||| |||||||||||||    
T  27944991 ctatgaagcacggatacggacaccggacacgacacggacactgac 27945035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 40132069 - 40132025
Alignment:
Q  138 ctatgaagcacgaatacggactccggacacggcacggacactgac 182  Q
    |||||||| ||| ||| |||| |||||||||||||||||||||||    
T  40132069 ctatgaagtacggatatggacaccggacacggcacggacactgac 40132025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 40332154 - 40332197
Alignment:
Q  137 actatgaagcacgaatacggactccggacacggcacggacactg 180  Q
    ||||||||||||| |||||||| ||||||||| |||||||||||    
T  40332154 actatgaagcacggatacggacaccggacacgacacggacactg 40332197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 25192456 - 25192412
Alignment:
Q  138 ctatgaagcacgaatacggactccggacacggcacggacactgac 182  Q
    |||||||||||||||||||||  ||||||||  ||||||||||||    
T  25192456 ctatgaagcacgaatacggacatcggacacgatacggacactgac 25192412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 8365628 - 8365584
Alignment:
Q  138 ctatgaagcacgaatacggactccggacacggcacggacactgac 182  Q
    |||||||||||| |||||||| || |||||| |||||||||||||    
T  8365628 ctatgaagcacggatacggacaccagacacgacacggacactgac 8365584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 20539783 - 20539739
Alignment:
Q  138 ctatgaagcacgaatacggactccggacacggcacggacactgac 182  Q
    |||||||||||| |||||||| | ||||||| |||||||||||||    
T  20539783 ctatgaagcacggatacggacactggacacgacacggacactgac 20539739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 5927449 - 5927405
Alignment:
Q  138 ctatgaagcacgaatacggactccggacacggcacggacactgac 182  Q
    |||| ||||||| |||||||| ||||||||| |||||||||||||    
T  5927449 ctattaagcacggatacggacaccggacacgacacggacactgac 5927405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University