View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4872_low_1 (Length: 724)
Name: NF4872_low_1
Description: NF4872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4872_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 603; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 30 - 704
Target Start/End: Complemental strand, 55337457 - 55336787
Alignment:
| Q |
30 |
taatttcacatgacatgaactcattagcttcattttttaatactaaaaacatgttattttattgtgtgtatacaaatattcctacatttggtccataggt |
129 |
Q |
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| T |
55337457 |
taatttcacatgacatgaactcattagcttcattttttaatactaaaaacatgttattttattgtgtgtatacaaatattcctacatttggtccataggt |
55337358 |
T |
|
| Q |
130 |
atctaagaacctatttgtttaatacctcccataactctt-gtcttaaaaaattgaataaaactataacattacaagttgcactcatcctccctgtcacaa |
228 |
Q |
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| T |
55337357 |
atctaagaacctatttgtttaatacctcccataactctttgtactaaaaaattgaataaaactataacattacaagttgcactcatcctccctgtcacaa |
55337258 |
T |
|
| Q |
229 |
tagtatagtatatatataaacctttcctcactaacactaaacacaaagcaaaacataattaacatacgtacaatcatttcattttcatggcttccatgca |
328 |
Q |
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| T |
55337257 |
tagtata-----tatataaacctttcctcactaacactaaacacaaatcaaaacataattaacatacgtacaatcatttcattttcatggcttccatgca |
55337163 |
T |
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| Q |
329 |
cacctcaacttcttctttttctttcttgtcttcaaaaagaggaaatgtgaatgcctcaatccatttcccaagacccaattctttacttcctaagaatagg |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55337162 |
cacctcaacttcttctttttctttcttgtcttcaaaaagaggtaatgtgaatgcctcaatccatttcccaagacccaattctttacttcctaagaatagg |
55337063 |
T |
|
| Q |
429 |
atacccactgcaaagctggttgaagggttaaccttcaaagactcagttccttcattattgcttgnnnnnnntgtcatcaataggacacataatttacacc |
528 |
Q |
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| T |
55337062 |
atacccactgcaaagctggttgaagggttaaccttcaaagactcagttccttcattattgcttgaaaaaaatgtcatcaataggacacataatttacacc |
55336963 |
T |
|
| Q |
529 |
atgatttatccaattctacaatcaataactccaacaccgtgcaactctatgctatcttagattctgtatctgacagaattgaaatgcacaaaaacatctg |
628 |
Q |
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| T |
55336962 |
atgatttatccaattcttcaatcaataactccaacaccgtgcaactctatgctatcttagattctgtatctgacagaattgaaatgcacaaaaacatcgg |
55336863 |
T |
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| Q |
629 |
cgaacagcgtcaaaattggaacaacctacttctaaacaacattaacatgattacactcactgctacaacattaact |
704 |
Q |
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| T |
55336862 |
cgaacagcgtcaaaattggaacaacctacttctaaacaacattaacatgattacactcactgctacaacattaact |
55336787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 568 - 703
Target Start/End: Complemental strand, 55331485 - 55331350
Alignment:
| Q |
568 |
tgcaactctatgctatcttagattctgtatctgacagaattgaaatgcacaaaaacatctgcgaacagcgtcaaaattggaacaacctacttctaaacaa |
667 |
Q |
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| T |
55331485 |
tgcaactctatgcaattttagattctgtatccgacagaatcgaaatgcacaacaacctcagccaacagcgacagaattggaacaacctacttctaaacaa |
55331386 |
T |
|
| Q |
668 |
cattaacatgattacactcactgctacaacattaac |
703 |
Q |
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||| |||||||| ||||| ||||||||||||||||| |
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| T |
55331385 |
catcaacatgatcacacttactgctacaacattaac |
55331350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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