View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4874-Insertion-4 (Length: 737)

Name: NF4874-Insertion-4
Description: NF4874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4874-Insertion-4
NF4874-Insertion-4
[»] chr8 (20 HSPs)
chr8 (11-368)||(13280976-13281333)
chr8 (416-735)||(13281333-13281658)
chr8 (108-289)||(19353670-19353849)
chr8 (285-410)||(30214034-30214159)
chr8 (285-406)||(20049484-20049607)
chr8 (616-731)||(19342189-19342304)
chr8 (108-199)||(19374219-19374308)
chr8 (318-409)||(27137969-27138060)
chr8 (285-332)||(29290886-29290933)
chr8 (649-731)||(19371687-19371769)
chr8 (63-157)||(34069224-34069318)
chr8 (650-731)||(17872012-17872093)
chr8 (634-730)||(12843479-12843574)
chr8 (512-568)||(27138392-27138448)
chr8 (178-255)||(9296287-9296363)
chr8 (668-733)||(12863784-12863849)
chr8 (668-731)||(19505163-19505227)
chr8 (622-665)||(5346052-5346095)
chr8 (672-730)||(24276856-24276914)
chr8 (668-733)||(7321028-7321093)
[»] chr5 (10 HSPs)
chr5 (63-284)||(25411432-25411652)
chr5 (285-406)||(17246070-17246191)
chr5 (588-733)||(17246556-17246701)
chr5 (668-733)||(18821100-18821165)
chr5 (299-383)||(19761392-19761476)
chr5 (605-733)||(22186342-22186469)
chr5 (619-662)||(30897403-30897446)
chr5 (175-255)||(28361377-28361458)
chr5 (676-733)||(25770596-25770653)
chr5 (175-255)||(40579227-40579307)
[»] chr4 (28 HSPs)
chr4 (52-254)||(1030403-1030608)
chr4 (605-737)||(11010860-11010992)
chr4 (284-396)||(11442190-11442302)
chr4 (284-396)||(11551393-11551505)
chr4 (289-410)||(8502150-8502271)
chr4 (609-733)||(11442737-11442860)
chr4 (609-733)||(11550835-11550958)
chr4 (106-284)||(9416536-9416713)
chr4 (611-731)||(35150134-35150254)
chr4 (578-731)||(4046185-4046335)
chr4 (285-407)||(4046720-4046843)
chr4 (607-723)||(14117086-14117202)
chr4 (334-409)||(8189834-8189909)
chr4 (173-273)||(26041256-26041356)
chr4 (620-729)||(9883032-9883140)
chr4 (612-733)||(8502692-8502808)
chr4 (667-730)||(8677229-8677292)
chr4 (294-407)||(43357997-43358109)
chr4 (52-159)||(1562982-1563089)
chr4 (175-255)||(18274560-18274640)
chr4 (175-255)||(48087135-48087215)
chr4 (605-733)||(13928729-13928856)
chr4 (354-398)||(35150695-35150739)
chr4 (676-735)||(11700994-11701053)
chr4 (678-733)||(28286685-28286740)
chr4 (660-694)||(15737037-15737071)
chr4 (285-330)||(17133626-17133671)
chr4 (671-728)||(47576018-47576075)
[»] chr7 (10 HSPs)
chr7 (285-411)||(17880046-17880171)
chr7 (294-420)||(22731264-22731390)
chr7 (624-733)||(7144592-7144701)
chr7 (284-368)||(21620638-21620722)
chr7 (175-255)||(25753578-25753658)
chr7 (611-731)||(5740748-5740867)
chr7 (653-733)||(21276254-21276334)
chr7 (678-728)||(12341689-12341739)
chr7 (324-406)||(19197073-19197155)
chr7 (334-375)||(21019656-21019697)
[»] chr2 (24 HSPs)
chr2 (285-404)||(24228000-24228119)
chr2 (285-375)||(12060652-12060742)
chr2 (284-419)||(19693252-19693389)
chr2 (618-733)||(27483814-27483928)
chr2 (618-735)||(25905615-25905732)
chr2 (289-375)||(42297829-42297915)
chr2 (287-406)||(13892320-13892438)
chr2 (287-406)||(14032445-14032563)
chr2 (649-732)||(26712906-26712989)
chr2 (628-733)||(12061192-12061298)
chr2 (606-731)||(9124550-9124675)
chr2 (649-729)||(24386338-24386418)
chr2 (285-343)||(9124137-9124195)
chr2 (606-643)||(13896865-13896902)
chr2 (606-643)||(14037482-14037519)
chr2 (175-255)||(19803826-19803906)
chr2 (323-375)||(12845610-12845662)
chr2 (649-733)||(17496512-17496595)
chr2 (696-731)||(21538463-21538498)
chr2 (648-707)||(24109093-24109152)
chr2 (681-731)||(11871887-11871937)
chr2 (676-726)||(25563666-25563716)
chr2 (650-727)||(24227452-24227529)
chr2 (683-736)||(42256591-42256644)
[»] chr1 (14 HSPs)
chr1 (173-281)||(26222581-26222688)
chr1 (285-395)||(25517289-25517399)
chr1 (611-729)||(20816924-20817040)
chr1 (171-255)||(26227051-26227134)
chr1 (676-733)||(1616019-1616076)
chr1 (290-375)||(1896319-1896404)
chr1 (676-728)||(14580346-14580398)
chr1 (668-728)||(33439304-33439364)
chr1 (649-731)||(17776744-17776827)
chr1 (696-730)||(34488609-34488643)
chr1 (697-731)||(36754905-36754939)
chr1 (649-730)||(1634933-1635014)
chr1 (628-729)||(22669053-22669153)
chr1 (175-255)||(27774300-27774380)
[»] chr3 (18 HSPs)
chr3 (52-262)||(7581046-7581256)
chr3 (298-421)||(9829365-9829488)
chr3 (578-728)||(27686069-27686218)
chr3 (285-410)||(24097634-24097759)
chr3 (578-733)||(10686877-10687031)
chr3 (285-375)||(10686358-10686448)
chr3 (175-255)||(1731013-1731093)
chr3 (668-733)||(9796548-9796613)
chr3 (175-278)||(11985091-11985194)
chr3 (650-730)||(20311360-20311440)
chr3 (613-731)||(5797924-5798042)
chr3 (668-733)||(17034135-17034200)
chr3 (649-732)||(4508329-4508413)
chr3 (668-728)||(14426905-14426965)
chr3 (661-731)||(13932292-13932363)
chr3 (668-736)||(4253274-4253343)
chr3 (668-729)||(4767355-4767416)
chr3 (676-729)||(8108800-8108853)
[»] scaffold0042 (1 HSPs)
scaffold0042 (285-398)||(89350-89463)
[»] scaffold0105 (1 HSPs)
scaffold0105 (334-409)||(16409-16484)
[»] chr6 (10 HSPs)
chr6 (138-284)||(19238350-19238493)
chr6 (172-245)||(6494618-6494691)
chr6 (52-176)||(29319277-29319404)
chr6 (668-729)||(10821477-10821538)
chr6 (676-733)||(30701116-30701173)
chr6 (658-733)||(14315245-14315321)
chr6 (668-731)||(26186080-26186144)
chr6 (683-730)||(29032395-29032442)
chr6 (668-730)||(15477521-15477583)
chr6 (668-729)||(18614939-18615000)
[»] scaffold0158 (1 HSPs)
scaffold0158 (175-254)||(11639-11718)
[»] scaffold0008 (2 HSPs)
scaffold0008 (606-722)||(9719-9835)
scaffold0008 (610-733)||(20101-20224)
[»] scaffold0194 (1 HSPs)
scaffold0194 (285-407)||(6911-7031)
[»] scaffold0003 (1 HSPs)
scaffold0003 (668-731)||(319066-319129)
[»] scaffold1752 (1 HSPs)
scaffold1752 (175-255)||(831-911)
[»] scaffold0804 (1 HSPs)
scaffold0804 (676-728)||(63-115)
[»] scaffold0161 (1 HSPs)
scaffold0161 (668-730)||(5467-5528)


Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 368
Target Start/End: Original strand, 13280976 - 13281333
Alignment:
Q  11 accacgtgaaatcgggcaattacaaggttcgatttctgacatataaaggtaatgttttgtgagtatcaacgatcgacaagaactacactccagcttctcg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||| |||| |||||||||| ||| || |||||    
T  13280976 accacgtgaaatcgggcaattacaaggttcgatttctgacatataaaagtaccgttttgtgagtatcaacggtcgagaagaactacattccggcctctcg 13281075  T
Q  111 ttattattattaaattaaattcattactttatttttccgcgcgaaacaaattactttgagattagccttagataaacaaagaaacgacagatagcggtac 210  Q
    || |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  13281076 ttgttattattaaattaaattcattactttatttttccgtgcgaaacaaattagtttgagattagccttagataaacaacgaaacgacagatagcggtac 13281175  T
Q  211 ttgtaagttggtctctctggattcgataaccttttatactaaaacggatataaccatacacttacggcgtatcatttgtgcgctatataatttgacagag 310  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||    
T  13281176 ttgtaatttggtctctctggattcgataaccttttatactaaaaccgatatagccatacacttacggtgtatcgtttgtgcgctatataatttgacaaag 13281275  T
Q  311 taaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtcct 368  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13281276 taagggaacttgtaaaatgatagaagtctttttatttttattcaactgctcaggtcct 13281333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 416 - 735
Target Start/End: Original strand, 13281333 - 13281658
Alignment:
Q  416 tcaaactaaatcagattcatcaattgttgacgtcatcttcatgtgcttgtatccttcagagtcttcattagatcagaagcttatgagagacaaacttctt 515  Q
    ||||||| ||||||| ||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||| |||| ||||| ||||||||||||||||||    
T  13281333 tcaaactgaatcagagtcatcaactgttgacatcatcttcaggtgcttgtatccttcagagtcttcgttacatcataagctcatgagagacaaacttctt 13281432  T
Q  516 ctaatcagagcattgactttgtgattgacctttcttcggatctttttccaagt-tc-----cttcttctttgcttttgatgctttcttatgattgtagag 609  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||     ||||| |||||||| ||||||||||||||||||||| ||    
T  13281433 ctaatcagagcattgactttgtggttgacctttctttggatctttttccaagtctcaatagcttctcctttgcttctgatgctttcttatgattgtaaag 13281532  T
Q  610 tcttgatatttcagaaccaaaacttgactttgagagtcggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttca 709  Q
    ||||| ||||||||||||| ||||| |||||||||||| |||||| ||||||| ||| ||||||| |||||| ||||||||||||||||||||| |||||    
T  13281533 tcttgctatttcagaaccagaacttaactttgagagtcagaatttgattttatagtagtgcacacttgaacaaatattaacatattaaattgttttttca 13281632  T
Q  710 taccttgttatcatcaaaacttcata 735  Q
    |||||| |||||||||||||||||||    
T  13281633 taccttattatcatcaaaacttcata 13281658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 108 - 289
Target Start/End: Original strand, 19353670 - 19353849
Alignment:
Q  108 tcgttattattattaaattaaattcattactttatttttccgcgcgaaacaaattactttgagattagccttagataaacaaagaaacgacagatagcgg 207  Q
    ||||| |||||||||||||||||||  || |||||||||   |||||||||||||  ||||| ||||||||| ||||||||||||||||||||||||| |    
T  19353670 tcgttgttattattaaattaaattctgtattttatttttaa-cgcgaaacaaattgttttga-attagcctttgataaacaaagaaacgacagatagcag 19353767  T
Q  208 tacttgtaagttggtctctctggattcgataaccttttatactaaaacggatataaccatacacttacggcgtatcatttgt 289  Q
    ||||| |||||| || |||  ||| |||| || | |||||||||||||  ||||| || ||||||| |||||||||||||||    
T  19353768 tacttataagttagtatctacggaatcgacaagcctttatactaaaaccaatatagccgtacacttgcggcgtatcatttgt 19353849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 285 - 410
Target Start/End: Original strand, 30214034 - 30214159
Alignment:
Q  285 tttgtgcgctatataatttgacagagtaaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatagcagagaatg 384  Q
    |||||||||||||||||| |||||||||||   ||||||||||||||||||||||| || ||||||||||||| |||| |||||||||||  ||||||||    
T  30214034 tttgtgcgctatataattcgacagagtaagagcacttgtaaaatgatagaagtcttcttctttttcttcaactactcatgtccttatatatgagagaatg 30214133  T
Q  385 agagagtcgttgttaaagaagtgtca 410  Q
    |||||| | ||||| |||||| ||||    
T  30214134 agagagccattgttgaagaagggtca 30214159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 285 - 406
Target Start/End: Complemental strand, 20049607 - 20049484
Alignment:
Q  285 tttgtgcgctatataatttgacagagtaaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatagcagagaatg 384  Q
    |||||||||||||||| |||| || ||||||  ||||||||||||||||||||||| ||| ||||||||||| | |||| || |||||||| ||||||||    
T  20049607 tttgtgcgctatataacttgatagggtaagggcacttgtaaaatgatagaagtcttgttaattttcttcaaccggtcagatcattatataggagagaatg 20049508  T
Q  385 ag--agagtcgttgttaaagaagt 406  Q
    ||  |||||||||||| |||||||    
T  20049507 agagagagtcgttgttgaagaagt 20049484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 616 - 731
Target Start/End: Complemental strand, 19342304 - 19342189
Alignment:
Q  616 tatttcagaaccaa-aacttgactttgagagtcggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttcatacct 714  Q
    |||||||||||||| || |||||||  |||||  |||||||||||||||||| ||||||| |||||||| |||    |||  |||||||||||||||| |    
T  19342304 tatttcagaaccaacaagttgacttc-agagttagaatttaattttatggtactgcacacttgaacacacatttgtgtatccaattgttctttcatacat 19342206  T
Q  715 tgttatcatcaaaactt 731  Q
    |||||||||||||||||    
T  19342205 tgttatcatcaaaactt 19342189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 19374219 - 19374308
Alignment:
Q  108 tcgttattattattaaattaaattcattactttatttttccgcgcgaaacaaattactttgagattagccttagataaacaaagaaacgaca 199  Q
    ||||| |||||||||||||||||||  || |||||||||   |||||||||||||  ||||| ||||||||| |||||||||||||||||||    
T  19374219 tcgttgttattattaaattaaattctgtattttatttttaa-cgcgaaacaaattgttttga-attagcctttgataaacaaagaaacgaca 19374308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 318 - 409
Target Start/End: Original strand, 27137969 - 27138060
Alignment:
Q  318 acttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatagcagagaatgagagagtcgttgttaaagaagtgtc 409  Q
    |||||||| || ||||||||||| || ||||| ||||||| |||| |||||| ||||||| ||||||||||||  |||||  ||||||||||    
T  27137969 acttgtaatattatagaagtcttgttgtttttattcaacttctcaagtccttgtatagcaaagaatgagagagcagttgtagaagaagtgtc 27138060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 29290933 - 29290886
Alignment:
Q  285 tttgtgcgctatataatttgacagagtaaggaaacttgtaaaatgata 332  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||    
T  29290933 tttgtgcgctatgtaatttgacagagtaaagaaacttgtaaaatgata 29290886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 649 - 731
Target Start/End: Complemental strand, 19371769 - 19371687
Alignment:
Q  649 gaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaactt 731  Q
    |||||||||||| ||||| ||||||| |||||||| |||    |||  |||||||||||||||| ||||||||||||||||||    
T  19371769 gaatttaattttgtggtactgcacacttgaacacacatttgtgtatccaattgttctttcatacattgttatcatcaaaactt 19371687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 157
Target Start/End: Complemental strand, 34069318 - 34069224
Alignment:
Q  63 tgttttgtgagtatcaacgatcgacaagaactacactccagcttctcgttattattattaaattaaattcattactttatttttccgcgcgaaac 157  Q
    ||||||||||||| ||||| ||||| |||| |||  ||| |  |||| ||||||||||| |||||||| || |||||||||||||||||| ||||    
T  34069318 tgttttgtgagtaacaacggtcgacgagaattactttccggtctctctttattattattgaattaaatccactactttatttttccgcgcaaaac 34069224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 650 - 731
Target Start/End: Complemental strand, 17872093 - 17872012
Alignment:
Q  650 aatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaactt 731  Q
    ||||||||| |||| |  |||| || |||||||| |||| ||||| |||||||||||| |||| ||||||||||||||||||    
T  17872093 aatttaattctatgatcctgcatacttgaacacaaattagcatatcaaattgttcttttatacattgttatcatcaaaactt 17872012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 634 - 730
Target Start/End: Original strand, 12843479 - 12843574
Alignment:
Q  634 tgactttgagagtcggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaact 730  Q
    ||||||||| |||| |||||||||| ||||||  ||||||| |||||||| |||| | |||  |||| ||||||||||| || ||||||||||||||    
T  12843479 tgactttga-agtcagaatttaattatatggtcctgcacacttgaacacacattagcgtatccaattattctttcatacattattatcatcaaaact 12843574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 512 - 568
Target Start/End: Original strand, 27138392 - 27138448
Alignment:
Q  512 tcttctaatcagagcattgactttgtgattgacctttcttcggatctttttccaagt 568  Q
    |||||| ||||||||||||||||| || ||||||||||||| |||||| ||||||||    
T  27138392 tcttcttatcagagcattgactttctggttgacctttcttcagatcttgttccaagt 27138448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 9296363 - 9296287
Alignment:
Q  178 ttagataaacaaagaaacgacagatagcggtacttgtaagttggtctctctggattcgataaccttttatactaaaac 255  Q
    |||||||||||||||||||||||||  |||||||||||| || || | | |||| |||| ||||||||||| ||||||    
T  9296363 ttagataaacaaagaaacgacagatgacggtacttgtaa-tttgtttatgtggactcgacaaccttttatagtaaaac 9296287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 668 - 733
Target Start/End: Original strand, 12863784 - 12863849
Alignment:
Q  668 tgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaacttca 733  Q
    ||||||| | |||||||||||||||||  ||||||| ||  |||| ||||||||||||||||||||    
T  12863784 tgcacacttaaacacatattaacatatccaattgttgttcaatactttgttatcatcaaaacttca 12863849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 668 - 731
Target Start/End: Complemental strand, 19505227 - 19505163
Alignment:
Q  668 tgcacacatgaacacatattaacatattaaattgttctttca-taccttgttatcatcaaaactt 731  Q
    ||||||| |||||| |||||||||||| ||||||  |||| | ||||||||||||||||||||||    
T  19505227 tgcacacttgaacaaatattaacatatcaaattgaacttttaataccttgttatcatcaaaactt 19505163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 622 - 665
Target Start/End: Original strand, 5346052 - 5346095
Alignment:
Q  622 agaaccaaaacttgactttgagagtcggaatttaattttatggt 665  Q
    ||||| ||| |||||||||||||||| |||||||||||||||||    
T  5346052 agaactaaatcttgactttgagagtcagaatttaattttatggt 5346095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 672 - 730
Target Start/End: Complemental strand, 24276914 - 24276856
Alignment:
Q  672 cacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaact 730  Q
    |||||||||| ||||||||||||  |||||||||   |||| |||||||||||||||||    
T  24276914 cacatgaacatatattaacatatccaattgttctacaatactttgttatcatcaaaact 24276856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 668 - 733
Target Start/End: Complemental strand, 7321093 - 7321028
Alignment:
Q  668 tgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaacttca 733  Q
    ||||||| | |||| |||||| ||||| |||| ||||||  |||| ||||||||||||||||||||    
T  7321093 tgcacacttaaacatatattagcatataaaatagttcttcaatactttgttatcatcaaaacttca 7321028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 63 - 284
Target Start/End: Complemental strand, 25411652 - 25411432
Alignment:
Q  63 tgttttgtgagtatcaacgatcgacaagaactacactccagcttctcgttattattattaaattaaattcattactttatttttccgcgcgaaacaaatt 162  Q
    ||||||||||||||||||| ||||| ||||||||  | |  | |||| || |||| ||||||||||| |||||| |||||||||  ||| |||| |||||    
T  25411652 tgttttgtgagtatcaacggtcgacgagaactacttttcgacatctcattgttatcattaaattaaaatcattattttatttttaggcgtgaaagaaatt 25411553  T
Q  163 actttgagattagccttagataaacaaagaaacgacagatagcggtacttgtaagttggtctctctggattcgataaccttttatactaaaacggatata 262  Q
      |||||||||| ||||||||||||||| ||||||||||||| ||||||||  | ||||||||| || |||||| |||||||||||||||||| ||||||    
T  25411552 gttttgagattaaccttagataaacaaacaaacgacagatagtggtacttggga-ttggtctctttgaattcgacaaccttttatactaaaactgatata 25411454  T
Q  263 accatacacttacggcgtatca 284  Q
      | |||||||  |||||||||    
T  25411453 gtcgtacacttgtggcgtatca 25411432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 17246070 - 17246191
Alignment:
Q  285 tttgtgcgctatataatttgacagagtaaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatagcagagaatg 384  Q
    |||||||| |||||| ||||||| |||||||| ||||||||||||| ||||||||| ||||||||||||||||||| || |||||| |||| |||||||     
T  17246070 tttgtgcgatatatattttgacatagtaaggacacttgtaaaatgacagaagtcttgttatttttcttcaactgcttagatccttaaataggagagaata 17246169  T
Q  385 agagagtcgttgttaaagaagt 406  Q
    ||||||| ||| || |||||||    
T  17246170 agagagttgtttttgaagaagt 17246191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 588 - 733
Target Start/End: Original strand, 17246556 - 17246701
Alignment:
Q  588 atgctttcttatgattgtagagtcttgatatttcagaaccaaaacttgactttgagagtcggaatttaattttatggtattgcacacatgaacacatatt 687  Q
    |||||||||||||  |  ||||||||||||||| |||||||||| ||||||| || |||  ||||||||||  || ||  ||||||| |||||| | ||     
T  17246556 atgctttcttatgtgttcagagtcttgatattttagaaccaaaatttgacttagatagttagaatttaattgcatagtcctgcacacttgaacaaacatc 17246655  T
Q  688 aacatattaaattgttctttcataccttgttatcatcaaaacttca 733  Q
    |||||||| |||||| |||| |||  || |||||||||||||||||    
T  17246656 aacatattcaattgtcctttaatagtttattatcatcaaaacttca 17246701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 668 - 733
Target Start/End: Original strand, 18821100 - 18821165
Alignment:
Q  668 tgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaacttca 733  Q
    ||||||| |||||||||||||  |||| ||||||||||||||||| || || ||||||||||||||    
T  18821100 tgcacacttgaacacatattagtatataaaattgttctttcatactttattgtcatcaaaacttca 18821165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 299 - 383
Target Start/End: Original strand, 19761392 - 19761476
Alignment:
Q  299 aatttgacagagtaaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatagcagagaat 383  Q
    |||||||||||||   || || ||||||||||||||| |||  || | ||||||||||||||||| ||||||||||| |||||||    
T  19761392 aatttgacagagtgttgacacatgtaaaatgatagaaatctggttgtatttcttcaactgctcagctccttatataggagagaat 19761476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 733
Target Start/End: Original strand, 22186342 - 22186469
Alignment:
Q  605 tagagtcttgatatttcagaaccaaaacttgactttgagagtcggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttc 704  Q
    |||| |||||||  |||||||||||||||||| ||| ||| |  |||||||||||||| ||  |||| || | |||||| |||| |||||| |||||||     
T  22186342 tagaatcttgatgcttcagaaccaaaacttga-tttaagaattagaatttaattttatagtcctgcatacttaaacacacattagcatattcaattgtta 22186440  T
Q  705 tttcataccttgttatcatcaaaacttca 733  Q
    |||| ||  ||||||||||||||| ||||    
T  22186441 tttcttattttgttatcatcaaaatttca 22186469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 662
Target Start/End: Original strand, 30897403 - 30897446
Alignment:
Q  619 ttcagaaccaaaacttgactttgagagtcggaatttaattttat 662  Q
    |||||||||||||||| ||||||||||||  |||||||||||||    
T  30897403 ttcagaaccaaaacttaactttgagagtcaaaatttaattttat 30897446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 28361377 - 28361458
Alignment:
Q  175 gccttagataaacaaagaaacgac-agatagcggtacttg-taagttggtctctctggattcgataaccttttatactaaaac 255  Q
    |||||||||||||| ||||||||| ||| ||||||||||| ||| |||||||||  |||| |||| || ||||||||||||||    
T  28361377 gccttagataaacatagaaacgacaagaaagcggtacttgttaaattggtctctgaggatacgat-actttttatactaaaac 28361458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 733
Target Start/End: Original strand, 25770596 - 25770653
Alignment:
Q  676 tgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaacttca 733  Q
    |||||||| ||||||||||  ||||||||||| || | || |||||||||||||||||    
T  25770596 tgaacacacattaacatatctaattgttcttttatgctttattatcatcaaaacttca 25770653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 40579227 - 40579307
Alignment:
Q  175 gccttagataaacaaagaaacgacagatagcggtacttgtaag-ttggtctctctggattcgataaccttttatactaaaac 255  Q
    |||||||||||||| |||||| ||||| |||||||||| | || ||||||||| | ||| |||| || ||||||||||||||    
T  40579227 gccttagataaacatagaaacaacagaaagcggtacttcttagtttggtctctgtagatacgat-actttttatactaaaac 40579307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 52 - 254
Target Start/End: Complemental strand, 1030608 - 1030403
Alignment:
Q  52 tataaaggtaatgttttgtgagtatcaacga---tcgacaagaactacactccagcttctcgttattattattaaattaaattcattactttatttttcc 148  Q
    |||||| ||| | |||||||||||||||| |   || || ||||||||| |||||  ||||||| |||| |||||||||| ||||||| ||||||||| |    
T  1030608 tataaaagtattattttgtgagtatcaacaacggtcaacgagaactacattccagtctctcgttgttataattaaattaatttcattattttatttttac 1030509  T
Q  149 gcgcgaaacaaattactttgagattagccttagataaacaaagaaacgacagatagcggtacttgtaagttggtctctctggattcgataaccttttata 248  Q
    ||||||||||||||  |||||||||||||||||||||||| |  | ||||| |||   |||||||||| ||| ||| | ||||||||| |||| ||||||    
T  1030508 gcgcgaaacaaattgttttgagattagccttagataaacataagagcgacatataatagtacttgtaaattgatctatgtggattcgacaaccctttata 1030409  T
Q  249 ctaaaa 254  Q
    ||||||    
T  1030408 ctaaaa 1030403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 605 - 737
Target Start/End: Complemental strand, 11010992 - 11010860
Alignment:
Q  605 tagagtcttgatatttcagaaccaaaacttgactttgagagtcggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttc 704  Q
    |||||||||||||| ||||||||||||||||| ||||||||||  ||||||||| |||||| ||| |||| ||||| || | || ||||||||||| |||    
T  11010992 tagagtcttgatatatcagaaccaaaacttgagtttgagagtcaaaatttaattctatggtgttgtacacttgaactcagactagcatattaaatttttc 11010893  T
Q  705 tttcataccttgttatcatcaaaacttcataga 737  Q
    | |||||| |||||||||||||||  |||||||    
T  11010892 tctcatactttgttatcatcaaaatatcataga 11010860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 284 - 396
Target Start/End: Original strand, 11442190 - 11442302
Alignment:
Q  284 atttgtgcgctatataatttgacagagtaaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatagcagagaat 383  Q
    ||||||||||||| |||||| | ||||||| || |||||||||| |||||||||||| || | ||||||||||||||||||| ||||||||| |||||||    
T  11442190 atttgtgcgctatttaatttaatagagtaatgatacttgtaaaaagatagaagtcttgttgtatttcttcaactgctcaggttcttatataggagagaat 11442289  T
Q  384 gagagagtcgttg 396  Q
    ||||||| |||||    
T  11442290 gagagagacgttg 11442302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 284 - 396
Target Start/End: Complemental strand, 11551505 - 11551393
Alignment:
Q  284 atttgtgcgctatataatttgacagagtaaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatagcagagaat 383  Q
    ||||||||||||| |||||| | ||||||| || |||||||||| |||||||||||| || | ||||||||||||||||||| ||||||||| |||||||    
T  11551505 atttgtgcgctatttaatttaatagagtaatgatacttgtaaaaagatagaagtcttgttgtatttcttcaactgctcaggttcttatataggagagaat 11551406  T
Q  384 gagagagtcgttg 396  Q
    ||||||| |||||    
T  11551405 gagagagacgttg 11551393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 289 - 410
Target Start/End: Original strand, 8502150 - 8502271
Alignment:
Q  289 tgcgctatataatttgacagagtaaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatagcagagaatgagag 388  Q
    |||||||| ||||||||||  | ||||| |||| |||||||||||||||||| |||| |||||||||||| |||||||||||| ||  || |||||||||    
T  8502150 tgcgctatttaatttgacaatggaaggacacttataaaatgatagaagtcttattatatttcttcaactgttcaggtccttatgtatgagggaatgagag 8502249  T
Q  389 agtcgttgttaaagaagtgtca 410  Q
    || ||||||| |||||||||||    
T  8502250 agccgttgttgaagaagtgtca 8502271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 609 - 733
Target Start/End: Original strand, 11442737 - 11442860
Alignment:
Q  609 gtcttgatatttcagaaccaaaacttgactttgagagtcggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttc 708  Q
    |||||||||||||||| ||||||||||||||||||||||  ||||||||| | ||||  | |||||  ||||||| ||||||||||| |||||||||||     
T  11442737 gtcttgatatttcagagccaaaacttgactttgagagtcataatttaattctttggtcatacacactcgaacacacattaacatattcaattgttcttt- 11442835  T
Q  709 ataccttgttatcatcaaaacttca 733  Q
    |||  ||||||||||||||||||||    
T  11442836 atagtttgttatcatcaaaacttca 11442860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 609 - 733
Target Start/End: Complemental strand, 11550958 - 11550835
Alignment:
Q  609 gtcttgatatttcagaaccaaaacttgactttgagagtcggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttc 708  Q
    |||||||||||||||| ||||||||||||||||||||||  ||||||||| | ||||  | |||||  ||||||| ||||||||||| |||||||||||     
T  11550958 gtcttgatatttcagagccaaaacttgactttgagagtcataatttaattctttggtcatacacactcgaacacacattaacatattcaattgttcttt- 11550860  T
Q  709 ataccttgttatcatcaaaacttca 733  Q
    |||  ||||||||||||||||||||    
T  11550859 atagtttgttatcatcaaaacttca 11550835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 106 - 284
Target Start/End: Original strand, 9416536 - 9416713
Alignment:
Q  106 tctcgttattattattaaattaaattcattactttatttttccgcgcgaaacaaattactttgagattagccttagataaacaaagaaacgacagatagc 205  Q
    |||||||||||||||| ||| ||||||| || ||||||||| |||| ||||| ||||   |||| |||| |||||||||| |||||||||||||||||      
T  9416536 tctcgttattattatttaatcaaattcagtattttatttttacgcgtgaaaccaattgtgttga-attaaccttagataagcaaagaaacgacagataaa 9416634  T
Q  206 ggtacttgtaagttggtctctctggattcgataaccttttatactaaaacggatataaccatacacttacggcgtatca 284  Q
     |||| ||||| ||||||| | |||| |||| |||| |||||| |||||| ||||||  | ||||||| |||| |||||    
T  9416635 agtacatgtaaattggtctatgtggaatcgacaaccctttatattaaaaccgatatagtcgtacacttgcggcatatca 9416713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 611 - 731
Target Start/End: Complemental strand, 35150254 - 35150134
Alignment:
Q  611 cttgatatttcagaaccaa-aacttgactttgagagtcggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttca 709  Q
    |||||| |||||||||||| ||||||||||||| |||| ||||||| |||||||||||||||| | |||||||| | |||  || | ||||||| |||||    
T  35150254 cttgatgtttcagaaccaacaacttgactttga-agtcagaatttagttttatggtattgcacccttgaacacacactaaagtactcaattgttatttca 35150156  T
Q  710 taccttgttatcatcaaaactt 731  Q
    ||| ||||||||||||||||||    
T  35150155 tacattgttatcatcaaaactt 35150134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 578 - 731
Target Start/End: Complemental strand, 4046335 - 4046185
Alignment:
Q  578 tttgcttttgatgctttcttatgattgtagagtcttgatatttcagaaccaaaacttgactttgagagtcggaatttaattttatggtattgcacacatg 677  Q
    |||||||  ||||||||| ||||  | |||||||||||||||||||||| |||| ||||||||||||||| ||||| ||   ||| ||  ||||||| ||    
T  4046335 tttgcttcagatgctttcctatgcgtttagagtcttgatatttcagaactaaaagttgactttgagagtcagaattcaa---tattgtcatgcacacttg 4046239  T
Q  678 aacacatattaacatattaaattgttctttcataccttgttatcatcaaaactt 731  Q
    ||| || |||| |||||| ||||||||| |||||  ||||||| ||||||||||    
T  4046238 aacgcacattagcatattcaattgttctatcatattttgttataatcaaaactt 4046185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 285 - 407
Target Start/End: Complemental strand, 4046843 - 4046720
Alignment:
Q  285 tttgtgcgctatataatttgacagagtaaggaaacttgtaaaat-gatagaagtctttttatttttcttcaactgctcaggtccttatatagcagagaat 383  Q
    ||||||||||||||||| |||||||||||  | || |||||||  ||| ||| |||| |||||||||||||||| ||||||||||||||||| | | |||    
T  4046843 tttgtgcgctatataatctgacagagtaataacacctgtaaaaaagattgaaatcttattatttttcttcaacttctcaggtccttatatagaaaataat 4046744  T
Q  384 gagagagtcgttgttaaagaagtg 407  Q
    ||||||  ||||||| ||||||||    
T  4046743 gagagaaccgttgttgaagaagtg 4046720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 607 - 723
Target Start/End: Original strand, 14117086 - 14117202
Alignment:
Q  607 gagtcttgatatttcagaaccaaaacttgactttgagagtcggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctt 706  Q
    |||||||||||||| | ||| |||||||||||||||||||  |||||||||| || |||  |||||||  ||||||||||||  ||||  |||||||| |    
T  14117086 gagtcttgatattttataactaaaacttgactttgagagttagaatttaattctacggtcatgcacactcgaacacatattagtatatccaattgttcat 14117185  T
Q  707 tcataccttgttatcat 723  Q
    |||||| ||||||||||    
T  14117186 tcatacgttgttatcat 14117202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 334 - 409
Target Start/End: Original strand, 8189834 - 8189909
Alignment:
Q  334 aagtctttttatttttcttcaactgctcaggtccttatatagcagagaatgagagagtcgttgttaaagaagtgtc 409  Q
    ||||||| ||||||||||||||||||| |||||| ||||||| |||||||||||||  ||||||| ||||||||||    
T  8189834 aagtcttgttatttttcttcaactgcttaggtccatatataggagagaatgagagatccgttgttgaagaagtgtc 8189909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 173 - 273
Target Start/End: Complemental strand, 26041356 - 26041256
Alignment:
Q  173 tagccttagataaacaaagaaacgacagatagcggtacttgtaagttggtctctctggattcgataaccttttatactaaaacggatataaccatacact 272  Q
    |||||||||||| |||||||||||||||||| | |||||||| | || |||| | | ||||||| |||  ||||||||||||| ||||||||| ||||||    
T  26041356 tagccttagatagacaaagaaacgacagataaccgtacttgtgaattagtctttgtagattcgacaactctttatactaaaactgatataaccgtacact 26041257  T
Q  273 t 273  Q
    |    
T  26041256 t 26041256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 620 - 729
Target Start/End: Complemental strand, 9883140 - 9883032
Alignment:
Q  620 tcagaaccaaaacttgactttgagagtcggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttcataccttgtta 719  Q
    ||||||||||||  ||||||||| ||||  ||||||||||||||||| ||||||| | |||||| ||||   |||| |||||||||||||||| || |||    
T  9883140 tcagaaccaaaaactgactttga-agtcttaatttaattttatggtagtgcacacttaaacacaaattagagtattcaattgttctttcatacattttta 9883042  T
Q  720 tcatcaaaac 729  Q
     |||||||||    
T  9883041 ccatcaaaac 9883032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 612 - 733
Target Start/End: Original strand, 8502692 - 8502808
Alignment:
Q  612 ttgatatttcagaaccaaaacttgactttgagagtcggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttcata 711  Q
    ||||| ||| |||||| |||||||||||  |||||| |||||||||| |||| |  | ||||| ||||    |||||||||||| |||||||| ||||||    
T  8502692 ttgatgttttagaacctaaacttgactta-agagtcagaatttaattctatgattctacacacttgaa----tattaacatattcaattgttcattcata 8502786  T
Q  712 ccttgttatcatcaaaacttca 733  Q
    | ||||||||||||||||||||    
T  8502787 ctttgttatcatcaaaacttca 8502808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 667 - 730
Target Start/End: Complemental strand, 8677292 - 8677229
Alignment:
Q  667 ttgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaact 730  Q
    |||||||| |||||| ||||||||||||| ||||||| ||| |||| |||||||||||||||||    
T  8677292 ttgcacacttgaacatatattaacatattcaattgttttttaatactttgttatcatcaaaact 8677229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 294 - 407
Target Start/End: Original strand, 43357997 - 43358109
Alignment:
Q  294 tatataatttgacagagtaaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatagcagagaatgagagagtcg 393  Q
    |||||| ||||||| ||||| ||||||||| |||||||||||||| |  | | ||||||||  | |||| |||||||||||| |||||| ||||||| |     
T  43357997 tatatactttgacaaagtaatgaaacttgttaaatgatagaagtc-tagtgtgtttcttcagtttctcatgtccttatataggagagaacgagagagcca 43358095  T
Q  394 ttgttaaagaagtg 407  Q
    ||||| ||||||||    
T  43358096 ttgttgaagaagtg 43358109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 1562982 - 1563089
Alignment:
Q  52 tataaaggtaatgttttgtgagtatcaacgatcgacaagaactacactccagcttctcgttattattattaaattaaattcattactttatttttccgcg 151  Q
    |||||| ||| |||||||  ||||||| || ||||| ||||||||| | |    ||||||| |||||||||||||||||||||||  |||| ||| ||||    
T  1562982 tataaaagtattgttttgccagtatcaccggtcgacgagaactacatttcgatctctcgttgttattattaaattaaattcattatattatatttacgcg 1563081  T
Q  152 cgaaacaa 159  Q
    ||||||||    
T  1563082 cgaaacaa 1563089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 18274560 - 18274640
Alignment:
Q  175 gccttagataaacaaagaaacgacagatagcggtacttg-taagttggtctctctggattcgataaccttttatactaaaac 255  Q
    |||||||||||||| ||||||||||   ||||||||||| ||| ||||||||| ||||| |||| || ||||||||||||||    
T  18274560 gccttagataaacatagaaacgacaagaagcggtacttgataaattggtctctatggatacgat-actttttatactaaaac 18274640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 48087135 - 48087215
Alignment:
Q  175 gccttagataaacaaagaaacgacagatagcggtacttg-taagttggtctctctggattcgataaccttttatactaaaac 255  Q
    |||||||||||||| |||||| ||||| | ||||||||| ||| ||||||||| ||||| |||| || ||||||||||||||    
T  48087135 gccttagataaacatagaaacaacagaaaacggtacttgttaatttggtctctgtggatacgat-actttttatactaaaac 48087215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 733
Target Start/End: Complemental strand, 13928856 - 13928729
Alignment:
Q  605 tagagtcttgatatttcagaaccaaaacttgactttgagagtcggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttc 704  Q
    |||||||||| || |||||||||||||||| |||| |||||||  ||||||||| ||| ||  |||| |  ||||||||  ||| |||||  |||||||     
T  13928856 tagagtcttggtacttcagaaccaaaacttaacttagagagtcataatttaattatattgtcctgcatatttgaacacacgttatcatatccaattgtta 13928757  T
Q  705 tttcataccttgttatcatcaaaacttca 733  Q
    |||  ||| ||||||| ||||||||||||    
T  13928756 ttt-ttacattgttattatcaaaacttca 13928729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 35150739 - 35150695
Alignment:
Q  354 aactgctcaggtccttatatagcagagaatgagagagtcgttgtt 398  Q
    ||||||||| |||||||||||| ||||||||||||| ||||||||    
T  35150739 aactgctcatgtccttatatagaagagaatgagagactcgttgtt 35150695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 676 - 735
Target Start/End: Original strand, 11700994 - 11701053
Alignment:
Q  676 tgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaacttcata 735  Q
    |||||| ||||||||||||  |||| ||||||||||| ||||||| |||||||| |||||    
T  11700994 tgaacaaatattaacatatctaattattctttcatactttgttattatcaaaacatcata 11701053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 733
Target Start/End: Complemental strand, 28286740 - 28286685
Alignment:
Q  678 aacacatattaacatattaaattgttctttcataccttgttatcatcaaaacttca 733  Q
    ||||||| ||| |||||| |||||||||||||||| |||| || ||||||||||||    
T  28286740 aacacatgttagcatatttaattgttctttcatactttgtaataatcaaaacttca 28286685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 660 - 694
Target Start/End: Original strand, 15737037 - 15737071
Alignment:
Q  660 tatggtattgcacacatgaacacatattaacatat 694  Q
    ||||||||||||||| |||||||||||||||||||    
T  15737037 tatggtattgcacacttgaacacatattaacatat 15737071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 285 - 330
Target Start/End: Original strand, 17133626 - 17133671
Alignment:
Q  285 tttgtgcgctatataatttgacagagtaaggaaacttgtaaaatga 330  Q
    |||||| |||||||||||||||||||||||   |||||||||||||    
T  17133626 tttgtgagctatataatttgacagagtaagagtacttgtaaaatga 17133671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 671 - 728
Target Start/End: Original strand, 47576018 - 47576075
Alignment:
Q  671 acacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaa 728  Q
    |||| |||||| |||||| |||||| || |||||||| |||| |||||||||||||||    
T  47576018 acacttgaacatatattagcatattcaagtgttctttaatactttgttatcatcaaaa 47576075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 9e-32; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 285 - 411
Target Start/End: Original strand, 17880046 - 17880171
Alignment:
Q  285 tttgtgcgctatataatttgacagagtaaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatagcagagaatg 384  Q
    |||||| ||||||||||||||||||||||||| |||| |||||||||||||||||| ||| | ||||| |||||||||  ||||||||||| ||||||||    
T  17880046 tttgtgtgctatataatttgacagagtaaggacacttttaaaatgatagaagtcttgtta-tgttctttaactgctcacatccttatataggagagaatg 17880144  T
Q  385 agagagtcgttgttaaagaagtgtcaa 411  Q
    ||| |||| ||||| ||||||||||||    
T  17880145 agaaagtcattgtttaagaagtgtcaa 17880171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 294 - 420
Target Start/End: Original strand, 22731264 - 22731390
Alignment:
Q  294 tatataatttgacagagtaaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatagcagagaatgagagagtcg 393  Q
    ||||||||||||||||||| ||  |||||| |||||||||||||||| |||| ||||||||| ||||||||||||||||||  ||||| ||| | || ||    
T  22731264 tatataatttgacagagtacgggcacttgtgaaatgatagaagtcttgttatgtttcttcaagtgctcaggtccttatataagagagattgatatagccg 22731363  T
Q  394 ttgttaaagaagtgtcaatgcgtcaaa 420  Q
    || || |||||||||||| ||||||||    
T  22731364 ttattgaagaagtgtcaacgcgtcaaa 22731390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 624 - 733
Target Start/End: Complemental strand, 7144701 - 7144592
Alignment:
Q  624 aaccaaaacttgactttgagagtcggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcat 723  Q
    ||||||||| |||||||||||||| |||||||||| ||||||  |||| || |||||||| |||  |||||  |||||||||||||||  ||||| ||||    
T  7144701 aaccaaaacatgactttgagagtcagaatttaattatatggttctgcatacttgaacacacattgtcatatccaattgttctttcatatattgttctcat 7144602  T
Q  724 caaaacttca 733  Q
    ||||||||||    
T  7144601 caaaacttca 7144592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 284 - 368
Target Start/End: Complemental strand, 21620722 - 21620638
Alignment:
Q  284 atttgtgcgctatataatttgacagagtaaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtcct 368  Q
    ||||||| | ||||||||||||||||||||||  | ||||||||||||||| ||||| ||| ||||||||||| |||||||||||    
T  21620722 atttgtgtgttatataatttgacagagtaagggcaattgtaaaatgatagaggtcttgttacttttcttcaaccgctcaggtcct 21620638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 25753578 - 25753658
Alignment:
Q  175 gccttagataaacaaagaaacgacagatagcggtacttg-taagttggtctctctggattcgataaccttttatactaaaac 255  Q
    |||||||||||||| |||||| ||||| ||||||||||| ||| ||||||||| ||||| |||| || ||||||||||||||    
T  25753578 gccttagataaacatagaaacaacagaaagcggtacttgttaatttggtctctgtggatacgat-actttttatactaaaac 25753658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 611 - 731
Target Start/End: Original strand, 5740748 - 5740867
Alignment:
Q  611 cttgatatttcagaaccaaaacttgactttgagagtcggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttcat 710  Q
    |||||| |||||||||| |||||||||||  |||||  |||||||||||||  ||  | ||||  |||||||| |||| |||||  ||||||||||| ||    
T  5740748 cttgatgtttcagaacctaaacttgactta-agagttagaatttaattttaatgtcctacacatttgaacacacattagcatatccaattgttcttttat 5740846  T
Q  711 accttgttatcatcaaaactt 731  Q
    || |||| |||||||||||||    
T  5740847 actttgtaatcatcaaaactt 5740867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 653 - 733
Target Start/End: Complemental strand, 21276334 - 21276254
Alignment:
Q  653 ttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaacttca 733  Q
    ||||||||||| || | || || |||| ||| |||||||||| |||||||  |||||||| |||| |||||||||||||||    
T  21276334 ttaattttatgatactacatacttgaaaacacattaacatatcaaattgtattttcatactttgtaatcatcaaaacttca 21276254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 678 - 728
Target Start/End: Original strand, 12341689 - 12341739
Alignment:
Q  678 aacacatattaacatattaaattgttctttcataccttgttatcatcaaaa 728  Q
    |||| ||||||||||||| |||| |||||| |||| |||||||||||||||    
T  12341689 aacatatattaacatattcaatttttctttaatactttgttatcatcaaaa 12341739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 324 - 406
Target Start/End: Complemental strand, 19197155 - 19197073
Alignment:
Q  324 aaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatagcagagaatgagagagtcgttgttaaagaagt 406  Q
    ||||||||| ||||||| || | ||| |||||||||| |||||||||||||  ||||||  ||||||  |||||| |||||||    
T  19197155 aaaatgatataagtcttgttgtctttattcaactgctaaggtccttatatatgagagaacaagagagcggttgttgaagaagt 19197073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 334 - 375
Target Start/End: Original strand, 21019656 - 21019697
Alignment:
Q  334 aagtctttttatttttcttcaactgctcaggtccttatatag 375  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||    
T  21019656 aagtcttgttattattcttcaactgcttaggtccttatatag 21019697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 6e-30; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 285 - 404
Target Start/End: Complemental strand, 24228119 - 24228000
Alignment:
Q  285 tttgtgcgctatataatttgacagagtaaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatagcagagaatg 384  Q
    ||||||||||||||||  |||||||||||   ||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||| | ||||||||    
T  24228119 tttgtgcgctatataagatgacagagtaaaagaacttttaaaatgatagaagtcttattatttttctccaactgctcaggtccttatattggagagaatg 24228020  T
Q  385 agagagtcgttgttaaagaa 404  Q
    ||||||  |||||| |||||    
T  24228019 agagagctgttgttgaagaa 24228000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 285 - 375
Target Start/End: Original strand, 12060652 - 12060742
Alignment:
Q  285 tttgtgcgctatataatttgacagagtaaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatag 375  Q
    ||||||| ||||||||||||||| |||||||| || |||||||||| ||||||||| ||||||||||| |||| |||||||||||||||||    
T  12060652 tttgtgcactatataatttgacaaagtaaggacacgtgtaaaatgacagaagtcttattatttttcttaaactactcaggtccttatatag 12060742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 284 - 419
Target Start/End: Complemental strand, 19693389 - 19693252
Alignment:
Q  284 atttgtgcgctatataatttgacagagtaaggaaacttgtaaaatgatagaagtct--ttttatttttcttcaactgctcaggtccttatatagcagaga 381  Q
    |||||||| ||||||||||||| |||||||||  ||||||||||||||||||  ||  |||| |||||||| |||| || |||||||||||||| |||||    
T  19693389 atttgtgctctatataatttgatagagtaagggcacttgtaaaatgatagaaacctagttttttttttcttaaactacttaggtccttatataggagaga 19693290  T
Q  382 atgagagagtcgttgttaaagaagtgtcaatgcgtcaa 419  Q
    || |||||||  ||||| ||||||||||| ||| ||||    
T  19693289 ataagagagttattgttgaagaagtgtcagtgcatcaa 19693252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 618 - 733
Target Start/End: Complemental strand, 27483928 - 27483814
Alignment:
Q  618 tttcagaaccaaaacttgactttgagagtcggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttcataccttgt 717  Q
    ||||||||||||||||||| ||| ||| |  |||||||||||||||||  ||||||| |||||||| ||||| |||| |||||||||||||| || ||||    
T  27483928 tttcagaaccaaaacttgatttt-agaattagaatttaattttatggtcctgcacacttgaacacacattaatatatcaaattgttctttcaaactttgt 27483830  T
Q  718 tatcatcaaaacttca 733  Q
    ||| ||||||||||||    
T  27483829 tatgatcaaaacttca 27483814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 618 - 735
Target Start/End: Complemental strand, 25905732 - 25905615
Alignment:
Q  618 tttcagaaccaaaacttgactttgagagtcggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttcataccttgt 717  Q
    |||||||||||||||| |||| | |||||  |||||||||| |||||| ||||| |  |||||||| |||||||| || |||||||||||| ||| || |    
T  25905732 tttcagaaccaaaactagactataagagttagaatttaattatatggtcttgcatatctgaacacacattaacattttcaattgttctttcttacgttat 25905633  T
Q  718 tatcatcaaaacttcata 735  Q
    ||||||||||||||||||    
T  25905632 tatcatcaaaacttcata 25905615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 289 - 375
Target Start/End: Complemental strand, 42297915 - 42297829
Alignment:
Q  289 tgcgctatataatttgacagagtaaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatag 375  Q
    ||||||||||| ||||||| |||||||  ||| ||||||| | ||||||||| || |||||||||||||||||||||||||||||||    
T  42297915 tgcgctatatattttgacaaagtaagggcactagtaaaattacagaagtcttgttgtttttcttcaactgctcaggtccttatatag 42297829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 287 - 406
Target Start/End: Original strand, 13892320 - 13892438
Alignment:
Q  287 tgtgcgctatataatttgacagagtaaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatagcagagaatgag 386  Q
    ||||||||||  |||| ||||||| ||||| | |||||||||||||  |||||| |||||||| |||||||||  || | ||||||||  ||||||||||    
T  13892320 tgtgcgctattaaattcgacagagaaaggacatttgtaaaatgataacagtcttgttattttt-ttcaactgcatagattcttatatacgagagaatgag 13892418  T
Q  387 agagtcgttgttaaagaagt 406  Q
    ||||  |||||| |||||||    
T  13892419 agagctgttgttgaagaagt 13892438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 287 - 406
Target Start/End: Original strand, 14032445 - 14032563
Alignment:
Q  287 tgtgcgctatataatttgacagagtaaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatagcagagaatgag 386  Q
    ||||||||||  |||| ||||||| ||||| | |||||||||||||  |||||| |||||||| |||||||||  || | ||||||||  ||||||||||    
T  14032445 tgtgcgctattaaattcgacagagaaaggacatttgtaaaatgataacagtcttgttattttt-ttcaactgcatagattcttatatacgagagaatgag 14032543  T
Q  387 agagtcgttgttaaagaagt 406  Q
    ||||  |||||| |||||||    
T  14032544 agagctgttgttgaagaagt 14032563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 649 - 732
Target Start/End: Original strand, 26712906 - 26712989
Alignment:
Q  649 gaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaacttc 732  Q
    |||||||||| ||||||  | ||||| ||||||||||||| |||||| ||||||||||| |||| || |||| |||||||||||    
T  26712906 gaatttaattatatggtcatacacacttgaacacatattagcatattcaattgttcttttatactttattatgatcaaaacttc 26712989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 628 - 733
Target Start/End: Original strand, 12061192 - 12061298
Alignment:
Q  628 aaaacttgactttgagagtcggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttc-tttcataccttgttatcatcaa 726  Q
    ||||||||||||| |||||| ||| |||| |||||| |  ||||||| | ||| || ||||||||||  |||||||| |||||||| || ||||||||||    
T  12061192 aaaacttgactttcagagtcagaaattaagtttatgattctgcacacttaaactcacattaacatatctaattgttcttttcatactttattatcatcaa 12061291  T
Q  727 aacttca 733  Q
    |||||||    
T  12061292 aacttca 12061298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 606 - 731
Target Start/End: Original strand, 9124550 - 9124675
Alignment:
Q  606 agagtcttgatatttcagaaccaaaacttgactttgagagtcggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttct 705  Q
    ||||||||||| ||||| ||| |||| |||  || |||||||||||||||| | | | || ||| | || |||||||| ||||||| ||| |||||||||    
T  9124550 agagtcttgatgtttcaaaactaaaatttgcattcgagagtcggaatttaactctgtagttttgaaaacttgaacacacattaacacattcaattgttct 9124649  T
Q  706 ttcataccttgttatcatcaaaactt 731  Q
    || |||| ||| |||| |||||||||    
T  9124650 tttatacattggtatcgtcaaaactt 9124675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 649 - 729
Target Start/End: Original strand, 24386338 - 24386418
Alignment:
Q  649 gaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaac 729  Q
    |||||||||| ||||||  ||||||| |||||||| |||||  || |||||||||||||||||| || ||||||| |||||    
T  24386338 gaatttaattctatggtcatgcacacttgaacacacattaaattactaaattgttctttcatacattattatcataaaaac 24386418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 285 - 343
Target Start/End: Original strand, 9124137 - 9124195
Alignment:
Q  285 tttgtgcgctatataatttgacagagtaaggaaacttgtaaaatgatagaagtcttttt 343  Q
    |||||| ||||| |||||||||||||||| || ||||||||| ||||||||||| ||||    
T  9124137 tttgtgtgctatgtaatttgacagagtaatgacacttgtaaactgatagaagtcctttt 9124195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 606 - 643
Target Start/End: Original strand, 13896865 - 13896902
Alignment:
Q  606 agagtcttgatatttcagaaccaaaacttgactttgag 643  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  13896865 agagtcttgatatttcagaacgaaaacttgactttgag 13896902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 606 - 643
Target Start/End: Original strand, 14037482 - 14037519
Alignment:
Q  606 agagtcttgatatttcagaaccaaaacttgactttgag 643  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  14037482 agagtcttgatatttcagaacgaaaacttgactttgag 14037519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 19803906 - 19803826
Alignment:
Q  175 gccttagataaacaaagaaacgacagatagcggtacttg-taagttggtctctctggattcgataaccttttatactaaaac 255  Q
    |||||||||||||| |||||| | ||| ||||||||||| ||| ||||||||| ||||| |||| || ||||||||||||||    
T  19803906 gccttagataaacatagaaacaatagaaagcggtacttgttaatttggtctctgtggatacgat-actttttatactaaaac 19803826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 375
Target Start/End: Complemental strand, 12845662 - 12845610
Alignment:
Q  323 taaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatag 375  Q
    |||||||||| ||||||| || |||||||||||||||| ||||| ||||||||    
T  12845662 taaaatgataaaagtcttgttgtttttcttcaactgcttaggtctttatatag 12845610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 649 - 733
Target Start/End: Original strand, 17496512 - 17496595
Alignment:
Q  649 gaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaacttca 733  Q
    |||||||||| ||| ||  |||| || |||||||| |||||||| || ||||||||||| | |||||||||||||||||| ||||    
T  17496512 gaatttaattctatagtcatgcatacttgaacacacattaacatgttcaattgttctttta-accttgttatcatcaaaatttca 17496595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 696 - 731
Target Start/End: Complemental strand, 21538498 - 21538463
Alignment:
Q  696 aaattgttctttcataccttgttatcatcaaaactt 731  Q
    ||||||||||||||||| ||||||||||||||||||    
T  21538498 aaattgttctttcatacattgttatcatcaaaactt 21538463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 707
Target Start/End: Complemental strand, 24109152 - 24109093
Alignment:
Q  648 ggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttcttt 707  Q
    |||||||||||||||| |  ||||||| ||||||| ||||||||||||  ||||||||||    
T  24109152 ggaatttaattttatgatcctgcacacttgaacacttattaacatattctattgttcttt 24109093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 681 - 731
Target Start/End: Original strand, 11871887 - 11871937
Alignment:
Q  681 acatattaacatattaaattgttctttcataccttgttatcatcaaaactt 731  Q
    ||||| ||| ||||| ||||||||||  |||||||||||||||||||||||    
T  11871887 acataataaaatattcaattgttcttcaataccttgttatcatcaaaactt 11871937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 676 - 726
Target Start/End: Complemental strand, 25563716 - 25563666
Alignment:
Q  676 tgaacacatattaacatattaaattgttctttcataccttgttatcatcaa 726  Q
    |||||||| ||||||||||  |||||| |||| ||||||||||||||||||    
T  25563716 tgaacacacattaacatatccaattgtccttttataccttgttatcatcaa 25563666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 24227529 - 24227452
Alignment:
Q  650 aatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaa 727  Q
    ||||||||||||||||  | | ||| |||||||| |||| |||||| ||||||| |||||||  || |||||||||||    
T  24227529 aatttaattttatggttcttcgcacttgaacacacattagcatattcaattgttttttcatattttcttatcatcaaa 24227452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 736
Target Start/End: Original strand, 42256591 - 42256644
Alignment:
Q  683 atattaacatattaaattgttctttcataccttgttatcatcaaaacttcatag 736  Q
    |||||| |||||  ||||||||||| |||| |||||||||||||||||| ||||    
T  42256591 atattagcatatccaattgttctttaatactttgttatcatcaaaactttatag 42256644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 173 - 281
Target Start/End: Original strand, 26222581 - 26222688
Alignment:
Q  173 tagccttagataaacaaagaaacgacagatagcggtacttgtaagttggtctctctggattcgataaccttttatactaaaacggatataaccatacact 272  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||| | ||||||||| |||||||||||||||||| ||||||  |||||| |    
T  26222581 tagccttagataaacaaagaaacgacatatagcggtacttgtaa-ttggtctttgtggattcgacaaccttttatactaaaactgatatagtcatacatt 26222679  T
Q  273 tacggcgta 281  Q
    | |||||||    
T  26222680 tgcggcgta 26222688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 285 - 395
Target Start/End: Original strand, 25517289 - 25517399
Alignment:
Q  285 tttgtgcgctatataatttgacagagtaaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatagcagagaatg 384  Q
    |||||||| ||||| ||| |||||||||| || ||||||||||||||||||||||| |||| ||||||||||||||||||||  ||||||| |||||| |    
T  25517289 tttgtgcgttatattattcgacagagtaaagacacttgtaaaatgatagaagtcttgttatatttcttcaactgctcaggtctatatatagaagagaacg 25517388  T
Q  385 agagagtcgtt 395  Q
    |||||| ||||    
T  25517389 agagagccgtt 25517399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 611 - 729
Target Start/End: Complemental strand, 20817040 - 20816924
Alignment:
Q  611 cttgatatttcagaaccaaaacttgactttgagagtcggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttcat 710  Q
    |||||| | ||||||||||||||||||||||| | || |||||||||||||||||  ||||||| | |||||| |||||  |||| ||||||||||||||    
T  20817040 cttgatgtatcagaaccaaaacttgactttga-attcagaatttaattttatggtcctgcacacttcaacacacattaag-tattcaattgttctttcat 20816943  T
Q  711 accttgttatcatcaaaac 729  Q
    || |||||||||| |||||    
T  20816942 acattgttatcattaaaac 20816924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 26227134 - 26227051
Alignment:
Q  171 attagccttagataaacaaagaaacgacagatagcggtacttgtaagttggtctctctggattcgataaccttttatactaaaac 255  Q
    ||||||||||||||||||||||||||||  |||||| ||||||||| ||||||| | | ||||||| ||||||||||||||||||    
T  26227134 attagccttagataaacaaagaaacgactcatagcgttacttgtaa-ttggtctatgtagattcgacaaccttttatactaaaac 26227051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 733
Target Start/End: Complemental strand, 1616076 - 1616019
Alignment:
Q  676 tgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaacttca 733  Q
    |||||||| ||||||||||  ||||||||||| |||| ||||||| ||||||||||||    
T  1616076 tgaacacacattaacatatctaattgttcttttatactttgttattatcaaaacttca 1616019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 375
Target Start/End: Original strand, 1896319 - 1896404
Alignment:
Q  290 gcgctatataatttgacagagtaaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatag 375  Q
    |||||||  ||||||| | ||||| || |||||||||||||||||||| ||||| |  |||||||||||  || ||||||||||||    
T  1896319 gcgctattgaatttgatatagtaatgacacttgtaaaatgatagaagtttttttgtagttcttcaactgtgcaagtccttatatag 1896404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 676 - 728
Target Start/End: Complemental strand, 14580398 - 14580346
Alignment:
Q  676 tgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaa 728  Q
    |||||| ||||||||||||  ||||||||||| |||| |||||||||||||||    
T  14580398 tgaacatatattaacatatctaattgttctttaatactttgttatcatcaaaa 14580346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 668 - 728
Target Start/End: Original strand, 33439304 - 33439364
Alignment:
Q  668 tgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaa 728  Q
    ||||||| ||| || |||||| |||||  ||||||||||| ||||||||||||||||||||    
T  33439304 tgcacacttgatcatatattagcatatctaattgttctttaataccttgttatcatcaaaa 33439364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 731
Target Start/End: Complemental strand, 17776827 - 17776744
Alignment:
Q  649 gaatttaattttatggtattgcacacatga-acacatattaacatattaaattgttctttcataccttgttatcatcaaaactt 731  Q
    |||||||||| |||| |  ||||||| ||| ||||| ||||||||||||| ||| ||||| |||| |||| |||||||||||||    
T  17776827 gaatttaattctatgatcctgcacacttgacacacacattaacatattaatttgatcttttatactttgtcatcatcaaaactt 17776744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 696 - 730
Target Start/End: Original strand, 34488609 - 34488643
Alignment:
Q  696 aaattgttctttcataccttgttatcatcaaaact 730  Q
    |||||||||||||||||||| ||||||||||||||    
T  34488609 aaattgttctttcataccttattatcatcaaaact 34488643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 697 - 731
Target Start/End: Complemental strand, 36754939 - 36754905
Alignment:
Q  697 aattgttctttcataccttgttatcatcaaaactt 731  Q
    |||||||||||||||| ||||||||||||||||||    
T  36754939 aattgttctttcatacattgttatcatcaaaactt 36754905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 730
Target Start/End: Complemental strand, 1635014 - 1634933
Alignment:
Q  649 gaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaact 730  Q
    |||||||||| |||| |  ||||||| ||||||||||||| | |||  ||||||||  | ||||||| ||||||||||||||    
T  1635014 gaatttaattctatgctcctgcacacttgaacacatattagcctatccaattgttcacttataccttattatcatcaaaact 1634933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 628 - 729
Target Start/End: Complemental strand, 22669153 - 22669053
Alignment:
Q  628 aaaacttgactttgagagtcggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaa 727  Q
    |||||||||| |||| ||||  ||||||||| ||||||  ||||||| |||||| ||||||   ||  ||||| ||||||||||| |||||||||| |||    
T  22669153 aaaacttgaccttga-agtcaaaatttaattatatggtcctgcacacttgaacaaatattagagtaccaaattcttctttcatacattgttatcataaaa 22669055  T
Q  728 ac 729  Q
    ||    
T  22669054 ac 22669053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 27774380 - 27774300
Alignment:
Q  175 gccttagataaacaaagaaacgacagatagcggtacttg-taagttggtctctctggattcgataaccttttatactaaaac 255  Q
    |||||||||||||| |||||  | ||| ||||||||||| ||| ||||||||| ||||| |||| || ||||||||||||||    
T  27774380 gccttagataaacatagaaataatagaaagcggtacttgttaatttggtctctgtggatacgat-actttttatactaaaac 27774300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 52 - 262
Target Start/End: Complemental strand, 7581256 - 7581046
Alignment:
Q  52 tataaaggtaatgttttgtgagtatcaacgatcgacaagaactacactccagcttctcgttattattattaaattaaattcattactttatttttccgcg 151  Q
    |||||| ||| | ||||| ||||||||||| ||||| ||||||||| |   |  ||| ||||| |||||||||||||||||| |||||||||||| |||     
T  7581256 tataaaagtatttttttgggagtatcaacggtcgacgagaactacattttggtctcttgttatcattattaaattaaattcaatactttatttttacgca 7581157  T
Q  152 cgaaac-aaattactttgagattagccttagataaacaaagaaacgacagatagcggtacttgtaagttggtctctctggattcgataaccttttatact 250  Q
    | |||| |||||  ||||| |||||||||| |||||||||||||| | ||| | || ||||||| ||||||||||| || |||||| ||||||||  |||    
T  7581156 caaaactaaattgttttga-attagccttaaataaacaaagaaacaaaagaaatcgatacttgtgagttggtctctgtgaattcgacaaccttttgaact 7581058  T
Q  251 aaaacggatata 262  Q
    ||||| ||||||    
T  7581057 aaaaccgatata 7581046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 298 - 421
Target Start/End: Complemental strand, 9829488 - 9829365
Alignment:
Q  298 taatttgacagagtaaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatagcagagaatgagagagtcgttgt 397  Q
    ||||||||||||||||||| || ||| ||||||| |||||| | || |||||||| || || ||||||| |||||||| ||||||||||||||| |||||    
T  9829488 taatttgacagagtaaggacacctgttaaatgatggaagtcctgttgtttttcttaaattgttcaggtctttatataggagagaatgagagagttgttgt 9829389  T
Q  398 taaagaagtgtcaatgcgtcaaac 421  Q
    | ||||||||||||||| ||||||    
T  9829388 tgaagaagtgtcaatgcatcaaac 9829365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 578 - 728
Target Start/End: Original strand, 27686069 - 27686218
Alignment:
Q  578 tttgcttttgatgctttcttatgattgtagagtcttgatatttcagaaccaaaacttgactttgagagtcggaatttaattttatggtattgcacacatg 677  Q
    |||||||  ||||||| ||||||  | || |||||| || | ||| ||||||||||||| ||| |||||  |||||||||| ||||||  ||||||| ||    
T  27686069 tttgcttcagatgcttccttatgcgtttaaagtcttaatgtctcacaaccaaaacttga-tttaagagttagaatttaattctatggtcctgcacacttg 27686167  T
Q  678 aacacatattaacatattaaattgttctttcataccttgttatcatcaaaa 728  Q
    ||| || ||||||||||| |||||||| ||||||| |||||| ||||||||    
T  27686168 aacgcacattaacatatttaattgttcgttcatacattgttaacatcaaaa 27686218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 285 - 410
Target Start/End: Complemental strand, 24097759 - 24097634
Alignment:
Q  285 tttgtgcgctatataatttgacagagtaaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatagcagagaatg 384  Q
    ||||||||||||||||||||| | |||||||  |||||||||||||||| || ||  || | |||||| || |||||| ||  |||||||| ||||| ||    
T  24097759 tttgtgcgctatataatttgataaagtaagggcacttgtaaaatgataggagcctggttttctttctttaaatgctcaagtatttatataggagagattg 24097660  T
Q  385 agagagtcgttgttaaagaagtgtca 410  Q
    |||||  ||||||| |||||||||||    
T  24097659 agagacccgttgttgaagaagtgtca 24097634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 578 - 733
Target Start/End: Original strand, 10686877 - 10687031
Alignment:
Q  578 tttgcttttgatgctttcttatgattgtagagtcttgatatttcagaaccaaaacttgactttgagagtcggaatttaattttatggtattgcacacatg 677  Q
    |||||||  ||||||| ||||||  | |||||||||||| ||||| ||||||||||||| |||  || |   ||||||||| ||||||  ||||||| ||    
T  10686877 tttgcttcagatgcttccttatgtgtttagagtcttgatgtttcataaccaaaacttga-tttacgaattataatttaattatatggtcctgcacacttg 10686975  T
Q  678 aacacatattaacatattaaattgttctttcataccttgttatcatcaaaacttca 733  Q
    |||||| || || ||||  ||| |||||| ||||||||||| ||||||||||||||    
T  10686976 aacacacatcaatatatccaatcgttcttccataccttgttttcatcaaaacttca 10687031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 285 - 375
Target Start/End: Original strand, 10686358 - 10686448
Alignment:
Q  285 tttgtgcgctatataatttgacagagtaaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatag 375  Q
    |||||||||| ||||||||||||| ||||||| ||||||||||  |||||| |||| |||||||| ||||||| ||  ||||||| |||||    
T  10686358 tttgtgcgctgtataatttgacagggtaaggacacttgtaaaaaaatagaaatcttgttatttttgttcaactactttggtccttgtatag 10686448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 1731093 - 1731013
Alignment:
Q  175 gccttagataaacaaagaaacgacagatagcggtacttg-taagttggtctctctggattcgataaccttttatactaaaac 255  Q
    |||||||||||||| |||||| ||||| ||||||||||| ||| ||||||||| ||||| |||| || ||||||||||||||    
T  1731093 gccttagataaacatagaaacaacagaaagcggtacttgttaatttggtctctgtggatacgat-actttttatactaaaac 1731013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 668 - 733
Target Start/End: Original strand, 9796548 - 9796613
Alignment:
Q  668 tgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaacttca 733  Q
    ||||||| |||||| ||||||||||||  ||||||||||| |||| || |||||||||||||||||    
T  9796548 tgcacacttgaacatatattaacatatccaattgttctttaatactttattatcatcaaaacttca 9796613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 278
Target Start/End: Original strand, 11985091 - 11985194
Alignment:
Q  175 gccttagataaacaaagaaacgacagatagcggtacttg-taagttggtctctctggattcgataaccttttatactaaaacggatataaccatacactt 273  Q
    |||||||||||||| |||||| ||| | ||||||||||| ||| ||||||||| ||||| |||| || |||||||||||||| || ||| |||| |||||    
T  11985091 gccttagataaacatagaaacaacataaagcggtacttgttaatttggtctctgtggatacgat-actttttatactaaaaccgacatagccatgcactt 11985189  T
Q  274 acggc 278  Q
     ||||    
T  11985190 gcggc 11985194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 650 - 730
Target Start/End: Complemental strand, 20311440 - 20311360
Alignment:
Q  650 aatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaact 730  Q
    ||||| ||||||||||  ||||||| |||||| |||||| |||||  ||||||||||  |||| |||||||||||||||||    
T  20311440 aattttattttatggtcatgcacacttgaacatatattagcatatccaattgttcttaaatactttgttatcatcaaaact 20311360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 613 - 731
Target Start/End: Complemental strand, 5798042 - 5797924
Alignment:
Q  613 tgatatttcagaaccaaaacttgactttgagagtcggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttca-ta 711  Q
    ||||||||||||||| |||||||| ||||| |   | ||||| | |||||| |  ||||||| |||||| | ||||||||||  ||||||||||| | ||    
T  5798042 tgatatttcagaaccgaaacttga-tttgatacatgaaattttagtttatgattctgcacacttgaacatacattaacatatccaattgttcttttagta 5797944  T
Q  712 ccttgttatcatcaaaactt 731  Q
    ||||||||||||||||||||    
T  5797943 ccttgttatcatcaaaactt 5797924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 668 - 733
Target Start/End: Complemental strand, 17034200 - 17034135
Alignment:
Q  668 tgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaacttca 733  Q
    ||||||| ||||||  |||||||||||  ||||||||||  |||| ||||||||||||||||||||    
T  17034200 tgcacacttgaacatgtattaacatatccaattgttcttcaatacattgttatcatcaaaacttca 17034135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 649 - 732
Target Start/End: Original strand, 4508329 - 4508413
Alignment:
Q  649 gaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttca-taccttgttatcatcaaaacttc 732  Q
    |||||| | |||||||| |||||||| |||||| |||||| |||||  | || |||||| | |||||||||||||||||||||||    
T  4508329 gaatttcaatttatggtcttgcacacttgaacatatattagcatatctagttcttcttttaataccttgttatcatcaaaacttc 4508413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 668 - 728
Target Start/End: Complemental strand, 14426965 - 14426905
Alignment:
Q  668 tgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaa 728  Q
    ||||||| |||||| |||||| |||||  ||||||||||| |||| |||||||||||||||    
T  14426965 tgcacacttgaacatatattagcatatccaattgttctttaatactttgttatcatcaaaa 14426905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 731
Target Start/End: Original strand, 13932292 - 13932363
Alignment:
Q  661 atggtattgcacacatgaacacatattaacatattaaattgttctttca-taccttgttatcatcaaaactt 731  Q
    ||||| |||||||| |||||| ||||||||||||  |||||  |||| | ||||||||||||||||||||||    
T  13932292 atggttttgcacacttgaacaaatattaacatatccaattgaacttttaataccttgttatcatcaaaactt 13932363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 668 - 736
Target Start/End: Original strand, 4253274 - 4253343
Alignment:
Q  668 tgcacacatgaacacatattaacatatt-aaattgttctttcataccttgttatcatcaaaacttcatag 736  Q
    ||||||| ||||||||||||||| |||  |||||||||||  |||| ||||||| |||||||||| ||||    
T  4253274 tgcacacttgaacacatattaacttatccaaattgttcttcaatactttgttattatcaaaactttatag 4253343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 668 - 729
Target Start/End: Complemental strand, 4767416 - 4767355
Alignment:
Q  668 tgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaac 729  Q
    ||||||| |||||| |||||| |||||  |||| |||||| |||| ||||||||||||||||    
T  4767416 tgcacacttgaacatatattagcatatctaattattctttaatactttgttatcatcaaaac 4767355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 729
Target Start/End: Complemental strand, 8108853 - 8108800
Alignment:
Q  676 tgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaac 729  Q
    |||||||| |||| ||||||  |||||||||| |||| ||||||||||||||||    
T  8108853 tgaacacacattagcatattccattgttcttttatactttgttatcatcaaaac 8108800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 285 - 398
Target Start/End: Complemental strand, 89463 - 89350
Alignment:
Q  285 tttgtgcgctatataatttgacagagtaaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatagcagagaatg 384  Q
    |||||||||||| |||||||||| |||||||  |||||||||||||  |||||||| |  |||||||||||||||||| |||||||||||  | ||| ||    
T  89463 tttgtgcgctatttaatttgacaaagtaagggcacttgtaaaatgacggaagtcttgtggtttttcttcaactgctcatgtccttatatatgaaagactg 89364  T
Q  385 agagagtcgttgtt 398  Q
    ||||| ||||||||    
T  89363 agagactcgttgtt 89350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 334 - 409
Target Start/End: Original strand, 16409 - 16484
Alignment:
Q  334 aagtctttttatttttcttcaactgctcaggtccttatatagcagagaatgagagagtcgttgttaaagaagtgtc 409  Q
    ||||||| ||||||||||||||||||| |||||| ||||||| |||||||||||||  ||||||| ||||||||||    
T  16409 aagtcttgttatttttcttcaactgcttaggtccatatataggagagaatgagagatccgttgttgaagaagtgtc 16484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 138 - 284
Target Start/End: Original strand, 19238350 - 19238493
Alignment:
Q  138 tttatttttccgcgcgaaacaaattactttgagattagccttagataaacaaagaaacgacagatagcggtacttgtaagttggtctctctggattcgat 237  Q
    ||||||||| |||| ||||||||||  ||||| | |||||||||||||| ||||| |||| ||||||  |||||||||| ||||||| | ||| |||||     
T  19238350 tttatttttacgcgtgaaacaaattt-tttga-actagccttagataaataaagacacgatagatagtagtacttgtaa-ttggtctttgtggcttcgac 19238446  T
Q  238 aaccttttatactaaaacggatataaccatacacttacggcgtatca 284  Q
    |||||||||||||||||  ||||||  | |||| || ||||||||||    
T  19238447 aaccttttatactaaaatcgatatagtcgtacatttgcggcgtatca 19238493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 6494691 - 6494618
Alignment:
Q  172 ttagccttagataaacaaagaaacgacagatagcggtacttgtaagttggtctctctggattcgataacctttt 245  Q
    |||| ||||||||||||||||||||||||||| || || |||||| ||||||| | ||||||||| ||||||||    
T  6494691 ttagtcttagataaacaaagaaacgacagataacgttatttgtaaattggtctatttggattcgacaacctttt 6494618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 176
Target Start/End: Original strand, 29319277 - 29319404
Alignment:
Q  52 tataaaggtaatgttttgtgagtatcaacga---tcgacaagaactacactccagcttctcgttattattattaaattaaattcattactttatttttcc 148  Q
    |||||| ||| |||||||||||||||||  |   ||||  ||||||||| |||  | ||||||| ||||||||||||||||||||||| |||| ||||      
T  29319277 tataaaagtattgttttgtgagtatcaaaaaaggtcgatgagaactacattccgacctctcgttgttattattaaattaaattcattattttagttttat 29319376  T
Q  149 gcgcgaaacaaattactttgagattagc 176  Q
    | ||||||||||||  ||||||||||||    
T  29319377 gtgcgaaacaaattgttttgagattagc 29319404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 668 - 729
Target Start/End: Original strand, 10821477 - 10821538
Alignment:
Q  668 tgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaac 729  Q
    ||||||| |||||||||||||| ||||  ||||||||||  |||| ||||||||||||||||    
T  10821477 tgcacacttgaacacatattaatatatctaattgttcttcaatactttgttatcatcaaaac 10821538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 733
Target Start/End: Complemental strand, 30701173 - 30701116
Alignment:
Q  676 tgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaacttca 733  Q
    |||| |||||||| |||||  ||||||||||| |||| ||||||||||||||||||||    
T  30701173 tgaatacatattagcatatccaattgttcttttatactttgttatcatcaaaacttca 30701116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 658 - 733
Target Start/End: Complemental strand, 14315321 - 14315245
Alignment:
Q  658 tttatggtattgcacacatgaacacatattaacatattaaattgttctttc-ataccttgttatcatcaaaacttca 733  Q
    ||||||||  |||| || ||||||||||||| |||||| ||||||| |||| |||  ||||||||||||||||||||    
T  14315321 tttatggtcatgcaaacttgaacacatattagcatattcaattgttttttcaatagtttgttatcatcaaaacttca 14315245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 668 - 731
Target Start/End: Original strand, 26186080 - 26186144
Alignment:
Q  668 tgcacacatgaacacatattaacatattaaattgt-tctttcataccttgttatcatcaaaactt 731  Q
    ||||||| |||||| |||||| |||||  |||||  |||||||||||||||||||||||||||||    
T  26186080 tgcacacttgaacaaatattagcatatccaattgactctttcataccttgttatcatcaaaactt 26186144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 683 - 730
Target Start/End: Original strand, 29032395 - 29032442
Alignment:
Q  683 atattaacatattaaattgttctttcataccttgttatcatcaaaact 730  Q
    |||||| |||||| ||||||||||| |||| |||||||||||||||||    
T  29032395 atattagcatattcaattgttctttaatactttgttatcatcaaaact 29032442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 668 - 730
Target Start/End: Complemental strand, 15477583 - 15477521
Alignment:
Q  668 tgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaact 730  Q
    ||||||| |||||| |||||| |||||| |||||   ||| ||||||||||||||||||||||    
T  15477583 tgcacacttgaacaaatattagcatattcaattgaattttaataccttgttatcatcaaaact 15477521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 668 - 729
Target Start/End: Complemental strand, 18615000 - 18614939
Alignment:
Q  668 tgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaac 729  Q
    ||||||| |||||| ||||||  |||||| |||||||||  |||| ||||||||||||||||    
T  18615000 tgcacacttgaacaaatattagtatattacattgttcttcaatactttgttatcatcaaaac 18614939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 11639 - 11718
Alignment:
Q  175 gccttagataaacaaagaaacgacagatagcggtacttg-taagttggtctctctggattcgataaccttttatactaaaa 254  Q
    |||||||||||||| |||||| ||||| ||||||||||| ||| ||||||||| ||||| |||| || |||||||||||||    
T  11639 gccttagataaacatagaaacaacagaaagcggtacttgttaatttggtctctgtggatacgat-actttttatactaaaa 11718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 606 - 722
Target Start/End: Complemental strand, 9835 - 9719
Alignment:
Q  606 agagtcttgatatttcagaaccaaaacttgactttgagagtcggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttct 705  Q
    ||||||||||||||||| ||| | ||||| | ||||||||||  |||||||||||||||| |  || || |||||||| |||  |||||  |||||||||    
T  9835 agagtcttgatatttcacaactataacttaattttgagagtcataatttaattttatggtttcacatacttgaacacacattggcatatccaattgttct 9736  T
Q  706 ttcataccttgttatca 722  Q
    || |||  |||||||||    
T  9735 tttatattttgttatca 9719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 610 - 733
Target Start/End: Complemental strand, 20224 - 20101
Alignment:
Q  610 tcttgatatttcagaaccaaaacttgactttgagagtcggaatttaattttatggtattgcacacatgaacacatattaacatattaaattgttctttca 709  Q
    ||||||||||||| ||| | ||||| | ||||||||||  |||||||||||||||| | ||| || ||||| || |||  |||||| |||| |||||| |    
T  20224 tcttgatatttcacaactataacttaattttgagagtcataatttaattttatggtttcgcatacttgaacgcacattggcatattcaatttttctttta 20125  T
Q  710 taccttgttatcatcaaaacttca 733  Q
     || ||||||||| ||||| ||||    
T  20124 aactttgttatcaacaaaatttca 20101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 285 - 407
Target Start/End: Complemental strand, 7031 - 6911
Alignment:
Q  285 tttgtgcgctatataatttgacagagtaaggaaacttgtaaaatgatagaagtctttttatttttcttcaactgctcaggtccttatatagcagagaatg 384  Q
    |||||| |||||||||||||| |||||||||| ||||||||||  ||   | ||||||| ||| | || |||| | ||||||||||||||| ||| ||||    
T  7031 tttgtgtgctatataatttgatagagtaaggacacttgtaaaa--attataatctttttttttctttttaacttcccaggtccttatatagaagaaaatg 6934  T
Q  385 agagagtcgttgttaaagaagtg 407  Q
    |||||   |||||| ||||||||    
T  6933 agagatatgttgttgaagaagtg 6911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 668 - 731
Target Start/End: Complemental strand, 319129 - 319066
Alignment:
Q  668 tgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaactt 731  Q
    ||||||| |||||||||||||||||||  ||||||| ||  |||| ||||||||||||||||||    
T  319129 tgcacacttgaacacatattaacatatctaattgtttttcaatactttgttatcatcaaaactt 319066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1752 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1752
Description:

Target: scaffold1752; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 911 - 831
Alignment:
Q  175 gccttagataaacaaagaaacgacagatagcggtacttg-taagttggtctctctggattcgataaccttttatactaaaac 255  Q
    |||||||||||||| |||||| ||||| ||||||||||| ||| ||||||||| | ||| |||| || ||||||||||||||    
T  911 gccttagataaacatagaaacaacagaaagcggtacttgttaatttggtctctgtagatacgat-actttttatactaaaac 831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0804 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 676 - 728
Target Start/End: Complemental strand, 115 - 63
Alignment:
Q  676 tgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaa 728  Q
    |||||| ||||||||||||  ||||||||||| |||| |||||||||||||||    
T  115 tgaacatatattaacatatctaattgttctttaatactttgttatcatcaaaa 63  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 668 - 730
Target Start/End: Original strand, 5467 - 5528
Alignment:
Q  668 tgcacacatgaacacatattaacatattaaattgttctttcataccttgttatcatcaaaact 730  Q
    ||||||| |||||| ||||||||||||  ||||||| ||| |||| |||||||||||||||||    
T  5467 tgcacacttgaacatatattaacatatgcaattgtt-tttaatactttgttatcatcaaaact 5528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University