View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4874-Insertion-5 (Length: 694)
Name: NF4874-Insertion-5
Description: NF4874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4874-Insertion-5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 130 - 694
Target Start/End: Original strand, 16560046 - 16560587
Alignment:
| Q |
130 |
aattattatatagccatgtcgtctctatttgtgtatacaaaattatcatggttgggcgccgttggagccaaaattccttttcaattttattttaagaaag |
229 |
Q |
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| T |
16560046 |
aattattatatagccatgtcgtctctatttgtgtatacaaaattatcatggttgggcgccgttggagccaaaattccttttcaattttattttaagaaag |
16560145 |
T |
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| Q |
230 |
attggattaagagccataacattttcattagtaataattttcaatttttcataagattttctaatgaaaagcataattcaacaacaacatcctagtaaat |
329 |
Q |
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| T |
16560146 |
atcggattaagagccataacattttca----------------atttttcataagattttctaatgaaaaggataattcaacaacaacatcctagtaaat |
16560229 |
T |
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| Q |
330 |
cattgattaannnnnnnn-attcaaaataaaagtagagaataacattacgcgactaggccaaaacccaaagtaaacagccaaggactttaataacatctg |
428 |
Q |
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| T |
16560230 |
cattgattaatttttttttattcaaaataaaagtagaggataacattacgcgactaggccaaaacccaaagtaaacagccaaggactttaataacatctg |
16560329 |
T |
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| Q |
429 |
tctcattaaacgtctaaccaaaatacttaaaggggtaaaacattggcgaagaaaaagatattgcatagtaaatagaagttcaagcccttgaaaaacatca |
528 |
Q |
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| T |
16560330 |
tctcattaaacgtcta---------cttaaagggataaaatattggcgaagaaaaagatattgcatagtaaatagaagttcaagcccttgaaaaacatca |
16560420 |
T |
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| Q |
529 |
acataaatgataatcctggaagctccgacctatttcggttaacaaaatctaaaacac--gaagagattgaatccaccaaacaaaaccattactttagatc |
626 |
Q |
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| T |
16560421 |
acataaatgataatcctggaagctccgacctattttggttaacaaaatctaaaacacaagaagagattgaatccaccaaacaaaaccattactttagatc |
16560520 |
T |
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| Q |
627 |
cctcgagaaataatcttgtctgcgcaacaattgtcttctctttaagatataagaaataatgaagtgca |
694 |
Q |
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| T |
16560521 |
ccacgagaaataatcttgtctgcgcaacaattgtcttctc-tcaagatatgagaaataatgaagtgca |
16560587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 16559958 - 16560045
Alignment:
| Q |
8 |
agaacaacataattgcatccc-tcttcattgtcgtacttactatcacagtctttgcaagcgctagactcacacctcagctgcgaacaa |
94 |
Q |
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| T |
16559958 |
agaacaacataattgcatcccctcttcatcgtcgtacttactatcacagtctttgcaagcgctagactcacgcctcagctgcgaacaa |
16560045 |
T |
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