View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4874-Insertion-6 (Length: 677)

Name: NF4874-Insertion-6
Description: NF4874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4874-Insertion-6
NF4874-Insertion-6
[»] chr7 (17 HSPs)
chr7 (102-677)||(8428220-8428798)
chr7 (102-672)||(8450639-8451219)
chr7 (279-511)||(8481086-8481322)
chr7 (193-408)||(8349704-8349924)
chr7 (193-398)||(8437052-8437246)
chr7 (574-677)||(8408863-8408967)
chr7 (190-361)||(8447544-8447713)
chr7 (574-638)||(7916047-7916111)
chr7 (411-487)||(8437227-8437304)
chr7 (468-511)||(8349982-8350025)
chr7 (383-480)||(8413996-8414094)
chr7 (193-259)||(8481351-8481417)
chr7 (190-254)||(8357990-8358054)
chr7 (417-488)||(8408700-8408771)
chr7 (279-336)||(7918404-7918461)
chr7 (191-252)||(8408607-8408668)
chr7 (574-623)||(8437750-8437799)
[»] scaffold0060 (1 HSPs)
scaffold0060 (574-638)||(73153-73217)


Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 102 - 677
Target Start/End: Complemental strand, 8428798 - 8428220
Alignment:
Q  102 aagaaataattggagcagatgcaatatataatgcaatt-gtcaatcgactcaaaagcaaagccacatttcactcaatacaaggaatgctttggttttata 200  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| |||||||||| || ||||||||    
T  8428798 aagaaataattggagtagatgcaatatataatgcattttgtcaatcgactcaacagcaaagccacatttcactcaatgcaaggaatgcgttagttttata 8428699  T
Q  201 gctcagtcactctcaatatttcacagagttttcgatgtgggacgtctttcttttgctttgaaaaattgtcactgtgcaattagctagcctacaatcatag 300  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| | ||    
T  8428698 gctcagtcactctcaatatttcacaaagttttcgatgtgggacgtctttcttttgctttcaaaaattgtcactatgcaattagctagcctacaattacag 8428599  T
Q  301 agtatccttccatgtgagacgttttgtatctatctaaatataatacatatttcatcgtgtaattatcatgcatgtaccaaaaaatataatagaacaaatc 400  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||    
T  8428598 agtatccttccatgtgggacgttttgtatctatctaaatataatacatatttcatcatgtaattatcatgcatgtaccaaaacatatgatagaacaaatc 8428499  T
Q  401 atatttaaggaaaaagtataatagaacaacataatgttatttggttgttgtcatgtgagcattaaacatatgatatgattgtatttattatttttatccg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8428498 atatttaaggaaaaagtataatagaacaacataatgttatttggttgttgtcatgtgagcattaaacatatgatatgattgtatttattatttttatccg 8428399  T
Q  501 gctcaatatc-tattatgaacatgaaacatattctaaaatttttaggtcaattaggtcatcatgataatctaaatgtatcatattatgtttcaattcaac 599  Q
    |||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  8428398 gctcaatatcttattatgaccatgaaacatattctaaattttttaggtcaattaggtcaccatgataatctaaatgtatcatattatgtttcaattcaat 8428299  T
Q  600 gtttgatgagacaatactgatatttagtttctttta-tttctaataataatagttaaattttaaatgttcaattcacca 677  Q
    |||||||||||||||| ||||||| ||||||||| | ||| |||||||||| |||||||||||||||||||||||||||    
T  8428298 gtttgatgagacaatattgatattgagtttctttcattttataataataattgttaaattttaaatgttcaattcacca 8428220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 102 - 672
Target Start/End: Original strand, 8450639 - 8451219
Alignment:
Q  102 aagaaataattggagcagatgcaatatataatgcaatt-gtcaatcgactcaaaagcaaagccacatttcactcaatacaaggaatgctttggttttata 200  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| |||||||||| || ||||||||    
T  8450639 aagaaataattggagtagatgcaatatataatgcattttgtcaatcgactcaacagcaaagccacatttcactcaatgcaaggaatgcgttagttttata 8450738  T
Q  201 gctcagtcactctcaatatttcacagagttttcgatgtgggacgtctttcttttgctttgaaaaattgtcactgtgcaattagctagcctacaatcatag 300  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| | ||    
T  8450739 gctcagtcactctcaatatttcacaaagttttcgatgtgggacgtctttcttttgctttcaaaaattgtcactatgcaattagctagcctacaattacag 8450838  T
Q  301 agtatccttccatgtgagacgttttgtatctatctaaatataatacatatttcatcgtgtaattatcatgcatgtaccaaaaaatataatagaacaaatc 400  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8450839 agtatccttccatgtgggacgttttgtatctatctaaatataatacatatttcatcatgtaattatcatgcatgtaccaaaaaatataatagaacaaatc 8450938  T
Q  401 atatttaaggaaaaagtataatagaacaacataatgttatttggttgttgtcatgtgagcattaaacatatgatatgattgtatttattatttttatccg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8450939 atatttaaggaaaaagtataatagaacaacataatgttatttggttgttgtcatgtgagcattaaacatatgatatgattgtatttattatttttatccg 8451038  T
Q  501 gctcaatatc-tattatgaacatgaaacatattctaaaatttttaggtcaattaggtcatcatg---ataatctaaatgtatcatattatgtttcaattc 596  Q
    |||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||| ||||   ||||||||||| ||||||||||||||| |||||    
T  8451039 gctcaatatcttattatgaccatgaaacatattctaaattttttaggtcaattaggtcaccatgataataatctaaatatatcatattatgtttgaattc 8451138  T
Q  597 aacgtttgatgagaca----atactgatatttagtttctttta-tttctaataataatagttaaattttaaatgttcaatt 672  Q
    || |||||||||||||    ||||||||||| ||||||||| | ||| |||||||||| ||||||||||||||||||||||    
T  8451139 aatgtttgatgagacaatatatactgatattgagtttctttcattttataataataattgttaaattttaaatgttcaatt 8451219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 279 - 511
Target Start/End: Complemental strand, 8481322 - 8481086
Alignment:
Q  279 attagctagcctacaatcatagagtatccttccatgtgagacgttttgtatctatctaaatataatacatatttcatcgtgtaattatcatgcatgtacc 378  Q
    ||||||||||||||||  |||||||||||||||||||  |||||||||||||||||||| ||| ||||||||| |||| ||||||||| | |||||  ||    
T  8481322 attagctagcctacaagtatagagtatccttccatgtcggacgttttgtatctatctaattatgatacatattccatcatgtaattatgaggcatgagcc 8481223  T
Q  379 aaaaaatataatagaacaaatcatattta--aggaaaaagtataa-tagaacaacataatgttatttggtt-gttgtcatgtgagcattaaacatatgat 474  Q
    ||||||||||| ||||| ||| || ||||  |  ||||| ||||| ||||||||||| ||||||||||||| ||  | |||||| ||| ||||| |||||    
T  8481222 aaaaaatataacagaactaataatgtttaacaaaaaaaaatataactagaacaacatgatgttatttggttggtaattatgtgaacatcaaacacatgat 8481123  T
Q  475 atgattgtatttattatttttatccggctcaatatct 511  Q
    || ||||||||||| ||||| ||||||||||||||||    
T  8481122 ataattgtatttatcattttaatccggctcaatatct 8481086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 193 - 408
Target Start/End: Original strand, 8349704 - 8349924
Alignment:
Q  193 gttttatagctcagtcactctcaatatttcacagagttttcgatgtgggacgtctttcttttgctttgaaaaattgtc-----actgtgcaattagctag 287  Q
    ||||||||| |||||||||||| | |||||||| ||||| ||||||||||| ||||||||||||||| | |   || |     ||| ||  |||||||||    
T  8349704 gttttatagatcagtcactctctacatttcacaaagtttccgatgtgggacttctttcttttgctttcatattgtgactaatgactatgatattagctag 8349803  T
Q  288 cctacaatcatagagtatccttccatgtgagacgttttgtatctatctaaatataatacatatttcatcgtgtaattatcatgcatgtaccaaaaaatat 387  Q
    |||||||  |||||||||||||||||||| |||||||||||||||||||| ||| ||||||||| |||| | ||||||| | |||||  |||||||||||    
T  8349804 cctacaagtatagagtatccttccatgtgggacgttttgtatctatctaattatgatacatattccatcatttaattatgaggcatgagccaaaaaatat 8349903  T
Q  388 aatagaacaaatcatatttaa 408  Q
    || ||||| ||| || |||||    
T  8349904 aacagaactaataatgtttaa 8349924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 193 - 398
Target Start/End: Original strand, 8437052 - 8437246
Alignment:
Q  193 gttttatagctcagtcactctcaatatttcacagagttttcgatgtgggacgtctttcttttgctttgaaaaattgtcactgtgcaattagctagcctac 292  Q
    ||||||||||||| |||||||||  ||||||||  |||| ||||||||||| ||||||||||||||| | |  |||||||| ||  |||||||||| |||    
T  8437052 gttttatagctcactcactctcatcatttcacaacgtttccgatgtgggacttctttcttttgctttcata--ttgtcactatgatattagctagcttac 8437149  T
Q  293 aatcatagagtatccttccatgtgagacgttttgtatctatctaaatataatacatatttcatcgtgtaattatcatgcatgtaccaaaaaatataatag 392  Q
    ||| ||| ||||||||| |||||| |||||||||||||||||||||||| ||         ||  ||||||||| | |||||||||||||||||||| ||    
T  8437150 aattatacagtatcctttcatgtgggacgttttgtatctatctaaatatgat---------ataatgtaattatgaggcatgtaccaaaaaatataaaag 8437240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 574 - 677
Target Start/End: Original strand, 8408863 - 8408967
Alignment:
Q  574 tgtatcatattatgtttcaattcaacgtttgatgagacaatactgatatttagtttctttta-tttctaataataatagttaaattttaaatgttcaatt 672  Q
    |||||||||| |||| ||||||||| ||||||||||||||||| |||||| ||||||||||| ||| |||||||||| ||||||||||||||||||||||    
T  8408863 tgtatcatatcatgtctcaattcaatgtttgatgagacaatacagatattgagtttcttttattttataataataattgttaaattttaaatgttcaatt 8408962  T
Q  673 cacca 677  Q
    |||||    
T  8408963 cacca 8408967  T

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Target: chr7; HSP #7
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 190 - 361
Target Start/End: Original strand, 8447544 - 8447713
Alignment:
Q  190 ttggttttatagctcagtcactctcaatatttcacagagttttcgatgtgggacgtctttcttttgctttgaaaaattgtcactgtgcaattagctagcc 289  Q
    |||||||||||||||| |||||||||  |||||||| | | | ||||||||||| ||||||||||||||| |||  || ||||| |   ||| |||||||    
T  8447544 ttggttttatagctcactcactctcatcatttcacaaattatccgatgtgggacttctttcttttgctttcaaa--ttatcactatcatattggctagcc 8447641  T
Q  290 tacaatcatagagtatccttccatgtgagacgttttgtatctatctaaatataatacatatttcatcgtgta 361  Q
    |||||  |||||| |||||| |||||| ||||||| |||||||||||||||| ||| |||||| ||| ||||    
T  8447642 tacaagtatagagaatcctttcatgtgggacgtttcgtatctatctaaatatgatatatattttatcatgta 8447713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 574 - 638
Target Start/End: Complemental strand, 7916111 - 7916047
Alignment:
Q  574 tgtatcatattatgtttcaattcaacgtttgatgagacaatactgatatttagtttcttttattt 638  Q
    ||||||||||||||| ||||||||| ||||||||||| ||| |||||||| ||||||||||||||    
T  7916111 tgtatcatattatgtctcaattcaatgtttgatgagataatgctgatattgagtttcttttattt 7916047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 411 - 487
Target Start/End: Original strand, 8437227 - 8437304
Alignment:
Q  411 aaaaagtataatagaacaacataatgttatttggtt-gttgtcatgtgagcattaaacatatgatatgattgtattta 487  Q
    ||||| ||||| ||||||| |||||||||||||||| ||| ||||||||| || ||||||||||||||||| ||||||    
T  8437227 aaaaaatataaaagaacaaaataatgttatttggttggttatcatgtgagtatcaaacatatgatatgattttattta 8437304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 8349982 - 8350025
Alignment:
Q  468 atatgatatgattgtatttattatttttatccggctcaatatct 511  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||    
T  8349982 atatgatatgattgtatttatcattttaatccggctcaatatct 8350025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 383 - 480
Target Start/End: Original strand, 8413996 - 8414094
Alignment:
Q  383 aatataatagaacaaatcat-atttaaggaaaaagtataatagaacaacataatgttatttggttg-ttgtcatgtgagcattaaacatatgatatgatt 480  Q
    ||||||||||||||||| ||  ||||   ||||| ||||||||||||| ||||||||||||| ||| || |||||||||||||  |||||||||||||||    
T  8413996 aatataatagaacaaataatgttttaccaaaaaaatataatagaacaaaataatgttatttgattgattatcatgtgagcatt-cacatatgatatgatt 8414094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 8481417 - 8481351
Alignment:
Q  193 gttttatagctcagtcactctcaatatttcacagagttttcgatgtgggacgtctttcttttgcttt 259  Q
    ||||||||| |||||||||||| | |||||| | ||||| |||||||| || |||||||||||||||    
T  8481417 gttttatagatcagtcactctctacatttcataaagtttccgatgtggaacttctttcttttgcttt 8481351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 8357990 - 8358054
Alignment:
Q  190 ttggttttatagctcagtcactctcaatatttcacagagttttcgatgtgggacgtctttctttt 254  Q
    |||||||||||||||| ||| |||| | |||||||| ||||| | ||||||||| ||||||||||    
T  8357990 ttggttttatagctcactcaatctctacatttcacaaagtttccaatgtgggacttctttctttt 8358054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 417 - 488
Target Start/End: Original strand, 8408700 - 8408771
Alignment:
Q  417 tataatagaacaacataatgttatttggtt-gttgtcatgtgagcattaaacatatgatatgattgtatttat 488  Q
    ||||||||||||| ||||| |||||||||| ||| | | |||||||| ||||| |||||||||||||||||||    
T  8408700 tataatagaacaaaataatattatttggttggttattacgtgagcatcaaaca-atgatatgattgtatttat 8408771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 7918461 - 7918404
Alignment:
Q  279 attagctagcctacaatcatagagtatccttccatgtgagacgttttgtatctatcta 336  Q
    ||||||||||||| ||  ||||| ||||||| |||||| |||||||| ||||||||||    
T  7918461 attagctagcctataagtatagaatatcctttcatgtgggacgttttctatctatcta 7918404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 8408607 - 8408668
Alignment:
Q  191 tggttttatagctcagtcactctcaatatttcacagagttttcgatgtgggacgtctttctt 252  Q
    ||||||||||||||| |||||||  | |||||| | ||||| ||||||||||| ||||||||    
T  8408607 tggttttatagctcattcactctgtacatttcaaaaagtttccgatgtgggacttctttctt 8408668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 623
Target Start/End: Original strand, 8437750 - 8437799
Alignment:
Q  574 tgtatcatattatgtttcaattcaacgtttgatgagacaatactgatatt 623  Q
    |||||||||| |||| ||||||||| |||| |||||||||||| ||||||    
T  8437750 tgtatcatatcatgtctcaattcaatgtttaatgagacaataccgatatt 8437799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 574 - 638
Target Start/End: Complemental strand, 73217 - 73153
Alignment:
Q  574 tgtatcatattatgtttcaattcaacgtttgatgagacaatactgatatttagtttcttttattt 638  Q
    |||||||||| |||| |||||||||  ||| |||||| |||||||||||| | ||||||| ||||    
T  73217 tgtatcatatcatgtctcaattcaatatttaatgagaaaatactgatattgaatttctttcattt 73153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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