View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4874_high_3 (Length: 328)
Name: NF4874_high_3
Description: NF4874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4874_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 8 - 315
Target Start/End: Original strand, 18600507 - 18600814
Alignment:
| Q |
8 |
gagatgaagagcatgttcttgcggccaagtgatgaggagtctgcaagtgtggacaagaaagtcccaccaactaagcaacccatgaagaacatggaagctg |
107 |
Q |
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| T |
18600507 |
gagaagaagagcatgttcttgcgaccaagtgatgaagagtctgcaagtgtggacaagaaaagcccaccaactaagcaacccatgaagaacatggaagctg |
18600606 |
T |
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| Q |
108 |
gaaggcctgtgatgatagagctctcacactgcatggcccattcagatatgatggaggcttgtggtggcccatcccaagcccatgagcctttgggaaactt |
207 |
Q |
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| T |
18600607 |
gaagacctgtgatgatagagctctcacactgcatggcccattcagatatgatggaggcctgtggtggcccatcccaagcccatgagcctttgggaaactt |
18600706 |
T |
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| Q |
208 |
acacacatcattaaatgatggtgtcgagtagcagccattcaaaatgtcaatgttttcaccggtgcagtgccatgatggaactgcatcggtgaaaacagtg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18600707 |
acacacatcattaaatgatggtgtcgagtagcagccattcaaaatgtcaatgttttcaccggtgcagtgccatgatggaacttcatcggtgaaaacagtg |
18600806 |
T |
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| Q |
308 |
atgaatgt |
315 |
Q |
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|||||||| |
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| T |
18600807 |
atgaatgt |
18600814 |
T |
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