View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4874_high_4 (Length: 270)
Name: NF4874_high_4
Description: NF4874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4874_high_4 |
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| [»] scaffold0079 (1 HSPs) |
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| [»] scaffold0384 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 41075382 - 41075611
Alignment:
| Q |
20 |
tggacatctcaacaaagcatgtggccttacagcaatgattttaatattcacaaatttagtttctatgtgcatatatgaattctttattatcaatcactaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41075382 |
tggacatctcaacaaagcatgtggccttacagcaatgattttgatattcacaaatttagtttctatgtgcatatatgaattctttattatcaatcactaa |
41075481 |
T |
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| Q |
120 |
acctgcaggatgagttagtgttatgacgaaaggtgggataaatgttttcacgttggtaagctcccaggggaagattaaagacatgggaaaaagaatgagg |
219 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41075482 |
acctgcaggatgagttattgttatgacgaaaggtgggataaatgttttcacgttggtaagctcccaggggaagattaaagacatgggaaaaagaatgagg |
41075581 |
T |
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| Q |
220 |
actgagagtaagagaaagagaagcagtttt |
249 |
Q |
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||||||||||||||||||||||||| |||| |
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| T |
41075582 |
actgagagtaagagaaagagaagcattttt |
41075611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 6289 - 6061
Alignment:
| Q |
20 |
tggacatctcaacaaagcatgtggccttacagcaatgattttaatattcacaaatttagtttctatgtgcatatatgaattctttattatcaatcactaa |
119 |
Q |
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||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
6289 |
tggacatctcaacaaagtttgtggccttacatcaatgattttgatattcacaaatttagtttctatgtgcatatatgaattctttatcatcaatctctaa |
6190 |
T |
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| Q |
120 |
acctgcaggatgagttagtgttatgacgaaaggtgggataaatgttttcacgttggtaagctcccaggggaagattaaagacatgggaaaaagaatgagg |
219 |
Q |
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|||||||| | || || | ||||| ||||||||||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| |
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| T |
6189 |
acctgcagaaggatgcagag-tatgaagaaaggtgggagaaatgttttcacgttggtaagctcccaggggaaaagtgaagacatgggaaaaagaatgagg |
6091 |
T |
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| Q |
220 |
actgagagtaagagaaagagaagcagtttt |
249 |
Q |
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||| |||| |||||| |||||||||||||| |
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| T |
6090 |
actcagagcaagagatagagaagcagtttt |
6061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 3728 - 3502
Alignment:
| Q |
20 |
tggacatctcaacaaagcatgtggccttacagcaatgattttaatattcacaaatttagtttctatgtgcatatatgaattctttattatcaatcactaa |
119 |
Q |
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||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
3728 |
tggacatctcaacaaagtttgtggccttacatcaatgattttgatattcacaaatttagtttctatgtgcatatatgaattctttatcatcaatctctaa |
3629 |
T |
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| Q |
120 |
acctgcaggatgagttagtgttatgacgaaaggtgggataaatgttttcacgttggtaagctcccaggggaagattaaagacatgggaaaaagaatgagg |
219 |
Q |
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|||||||| | || || | ||| | ||||||||||| |||||||||||||| |||||||||||||||||| | | ||||||||||||||||||||||| |
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| T |
3628 |
acctgcagaaggatgcagag-tataaagaaaggtgggagaaatgttttcacgtgggtaagctcccaggggaaaagtgaagacatgggaaaaagaatgagg |
3530 |
T |
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| Q |
220 |
actgagagtaagagaaagagaagcagtttt |
249 |
Q |
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||| || |||||| |||||||||||||| |
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| T |
3529 |
act--cagcaagagatagagaagcagtttt |
3502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 4382918 - 4382986
Alignment:
| Q |
66 |
ttcacaaatttagtttctatgtgcatatatgaattctttatt--atcaatcactaaacctgcaggatga |
132 |
Q |
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| T |
4382918 |
ttcacaaattcagtttctatgtgcatatttgaattctttaatacatcaatctctaaaccaacaggatga |
4382986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 4524971 - 4524915
Alignment:
| Q |
66 |
ttcacaaatttagtttctatgtgcatatatgaattctttattatcaatcactaaacc |
122 |
Q |
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|||||||||||||||||| | |||||||||||||| |||| ||||| || ||||||| |
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| T |
4524971 |
ttcacaaatttagtttctttatgcatatatgaattatttaatatcattctctaaacc |
4524915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 444722 - 444783
Alignment:
| Q |
66 |
ttcacaaatttagtttctatgtgcatatatgaattctttattatcaatcactaaacctgcag |
127 |
Q |
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|||||||||||| | | | ||||||||| ||||||||||| |||||||| |||||||||||| |
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| T |
444722 |
ttcacaaatttattgtttgtgtgcatatttgaattctttaatatcaatctctaaacctgcag |
444783 |
T |
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