View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4874_low_1 (Length: 471)

Name: NF4874_low_1
Description: NF4874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4874_low_1
NF4874_low_1
[»] chr4 (14 HSPs)
chr4 (20-455)||(41074863-41075303)
chr4 (46-139)||(14320962-14321055)
chr4 (46-139)||(14322132-14322225)
chr4 (53-139)||(14321708-14321794)
chr4 (53-139)||(14320540-14320626)
chr4 (141-191)||(46020667-46020717)
chr4 (141-184)||(46015435-46015478)
chr4 (149-191)||(46021346-46021388)
chr4 (148-186)||(46304201-46304239)
chr4 (141-186)||(46246221-46246266)
chr4 (150-191)||(46303770-46303811)
chr4 (141-185)||(46015982-46016026)
chr4 (84-144)||(46027955-46028014)
chr4 (84-144)||(46428272-46428332)
[»] scaffold0079 (5 HSPs)
scaffold0079 (209-375)||(6451-6625)
scaffold0079 (144-191)||(6706-6753)
scaffold0079 (58-110)||(7857-7909)
scaffold0079 (27-86)||(7027-7086)
scaffold0079 (102-144)||(6767-6809)
[»] scaffold0384 (5 HSPs)
scaffold0384 (209-375)||(3889-4064)
scaffold0384 (46-144)||(5609-5708)
scaffold0384 (144-191)||(4145-4192)
scaffold0384 (23-86)||(4509-4572)
scaffold0384 (102-144)||(4206-4248)
[»] chr1 (9 HSPs)
chr1 (20-144)||(50667978-50668102)
chr1 (20-191)||(50668439-50668626)
chr1 (139-188)||(3802615-3802664)
chr1 (81-139)||(3801754-3801812)
chr1 (70-144)||(50667366-50667440)
chr1 (148-189)||(3804059-3804100)
chr1 (146-191)||(50668119-50668164)
chr1 (139-191)||(3802173-3802225)
chr1 (147-191)||(50669344-50669388)
[»] chr5 (1 HSPs)
chr5 (21-79)||(8186021-8186079)
[»] chr8 (3 HSPs)
chr8 (156-187)||(4525277-4525308)
chr8 (141-187)||(4522904-4522950)
chr8 (100-138)||(39328272-39328310)
[»] chr7 (1 HSPs)
chr7 (30-79)||(715301-715350)


Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 20 - 455
Target Start/End: Original strand, 41074863 - 41075303
Alignment:
Q  20 agtagaaagtaagttttactcaacactgtattaatatattctttgcggttgaattaatttacatttcgtccatttgttatgatttagattttgacggtag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||     
T  41074863 agtagaaagtaagttttactcaacactgtattaatatattctttgtggttgaattaatttgcatctcgtccatttgttatgatttagattttgacggtaa 41074962  T
Q  120 aaccatgggaagatacaattattttgtgaaaatgctagctcttgattgagtgttaatatgcacataagttggnnnnnnnggctgttatatttgtcttcta 219  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  41074963 aaccatgggaagatgcaattattttgtgaaaatgctagctcttgattgagtgttaatatgcacataagttgatttttttggctgttatatttgtcttcta 41075062  T
Q  220 ttatgtttttgccttgtccttttc------aactttcagccatattgaaatatcctctcacctttgggtttcttatttgaa-aaaacattaaataaacag 312  Q
    |||||||||||||||||| |||||      |||||||||||||||||||||||||||  |||||||||||||||||||||  ||||||||||||||| ||    
T  41075063 ttatgtttttgccttgtctttttcttttttaactttcagccatattgaaatatcctc--acctttgggtttcttatttgatcaaaacattaaataaaaag 41075160  T
Q  313 aggtagcgacgaagccccattcaaaagatgaaatagaagaagttgctgagccagcagtagagagctcagatgattccgatgatcctcttagtgatccgat 412  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  41075161 aggtagcgacgaagccccattcaaaagacaaaatagaagaagttgctgagccagaagtagagagctcagatgattccgatgatcgtcttagtgatccgat 41075260  T
Q  413 atggtgggatggttcgtccttgggttgatatgagtacttatga 455  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  41075261 atggtgggatggttcttcgttgggttgatatgagtacttatga 41075303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 46 - 139
Target Start/End: Original strand, 14320962 - 14321055
Alignment:
Q  46 tgtattaatatattctttgcggttgaattaatttacatttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaatt 139  Q
    ||||||||||| |||||| | |||||||||||||||| ||| |||||||||| ||||||||||||||||   ||||||||| ||||||||||||    
T  14320962 tgtattaatatgttctttacagttgaattaatttacacttcatccatttgttgtgatttagattttgacataagaaccatgtgaagatacaatt 14321055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 139
Target Start/End: Original strand, 14322132 - 14322225
Alignment:
Q  46 tgtattaatatattctttgcggttgaattaatttacatttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaatt 139  Q
    ||||||||||| |||||| | ||||||||||||| || ||| |||||||||| ||||||||||||||||   ||||||||| ||||||||||||    
T  14322132 tgtattaatatgttctttacagttgaattaatttgcacttcatccatttgttgtgatttagattttgacataagaaccatgtgaagatacaatt 14322225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 14321708 - 14321794
Alignment:
Q  53 atatattctttgcggttgaattaatttacatttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaatt 139  Q
    |||| |||||||  ||||||||||| | || ||| ||||||||| ||||||||||| || || ||||||||||||||||||||||||    
T  14321708 atatgttctttggagttgaattaatctgcacttcatccatttgtcatgatttagatattaactgtagaaccatgggaagatacaatt 14321794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 14320540 - 14320626
Alignment:
Q  53 atatattctttgcggttgaattaatttacatttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaatt 139  Q
    |||| |||||||  ||||||||||| | || ||| ||||||||| ||||||||||| || || ||||||||||| ||||||||||||    
T  14320540 atatgttctttggagttgaattaatctgcacttcatccatttgtcatgatttagatattaactgtagaaccatgtgaagatacaatt 14320626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 46020667 - 46020717
Alignment:
Q  141 ttttgtgaaaatgctagctcttgattgagtgttaatatgcacataagttgg 191  Q
    |||| ||||||||| | ||||||||||||||||||||||||||||| ||||    
T  46020667 ttttatgaaaatgcaacctcttgattgagtgttaatatgcacataatttgg 46020717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 46015435 - 46015478
Alignment:
Q  141 ttttgtgaaaatgctagctcttgattgagtgttaatatgcacat 184  Q
    |||| ||||||||| | |||||||||||||||||||||||||||    
T  46015435 ttttatgaaaatgcaacctcttgattgagtgttaatatgcacat 46015478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 46021346 - 46021388
Alignment:
Q  149 aaatgctagctcttgattgagtgttaatatgcacataagttgg 191  Q
    |||||| | ||||||||||| ||||||||||||||||||||||    
T  46021346 aaatgcaacctcttgattgaatgttaatatgcacataagttgg 46021388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 46304239 - 46304201
Alignment:
Q  148 aaaatgctagctcttgattgagtgttaatatgcacataa 186  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  46304239 aaaatgcaagctcttgtttgagtgttaatatgcacataa 46304201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 46246266 - 46246221
Alignment:
Q  141 ttttgtgaaaatgctagctcttgattgagtgttaatatgcacataa 186  Q
    |||| ||||||||| | ||||||||||| |||||||||||||||||    
T  46246266 ttttatgaaaatgcaacctcttgattgaatgttaatatgcacataa 46246221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 46303811 - 46303770
Alignment:
Q  150 aatgctagctcttgattgagtgttaatatgcacataagttgg 191  Q
    ||||| |||||||||||  |||||||||||||||||||||||    
T  46303811 aatgcaagctcttgattttgtgttaatatgcacataagttgg 46303770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 46015982 - 46016026
Alignment:
Q  141 ttttgtgaaaatgctagctcttgattgagtgttaatatgcacata 185  Q
    |||| ||||||||| || |||||||||||||||||||| ||||||    
T  46015982 ttttatgaaaatgcaagttcttgattgagtgttaatatacacata 46016026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 46027955 - 46028014
Alignment:
Q  84 ttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaattatttt 144  Q
    ||||||||| |||||||||||| ||||||||  || ||| ||| |||||||||||||||||    
T  46027955 ttcgtccatctgttatgatttaaattttgacttta-aactatgtgaagatacaattatttt 46028014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 46428272 - 46428332
Alignment:
Q  84 ttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaattatttt 144  Q
    ||||||||  |||||||||||| ||||||||  || ||| ||| |||||||||||||||||    
T  46428272 ttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttt 46428332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 88; Significance: 4e-42; HSPs: 5)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 209 - 375
Target Start/End: Complemental strand, 6625 - 6451
Alignment:
Q  209 tttgtcttctattatgtttttgccttgtccttttc-----aactttcagccatattgaaatatcctc--tcacctttgggtttcttatttgaa-aaaaca 300  Q
    |||||||| | |||||||||||||||||| |||||     |||||||||||||||| ||||||||||  ||||| |||||||||||||||||  ||||||    
T  6625 tttgtctttttttatgtttttgccttgtctttttctttttaactttcagccatatttaaatatcctccctcacccttgggtttcttatttgatcaaaaca 6526  T
Q  301 ttaaataaacagaggtagcgacgaagccccattcaaaagatgaaatagaagaagttgctgagccagcagtagaga 375  Q
     |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| || ||| ||||||||    
T  6525 ataaataaacagaggtagctacgaagccccattcaaaagacgaaatagaagaagttgctaagtcagaagtagaga 6451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 6753 - 6706
Alignment:
Q  144 tgtgaaaatgctagctcttgattgagtgttaatatgcacataagttgg 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6753 tgtgaaaatgctagctcttgattgagtgttaatatgcacataagttgg 6706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 7909 - 7857
Alignment:
Q  58 ttctttgcggttgaattaatttacatttcgtccatttgttatgatttagattt 110  Q
    |||||||||||||||||||||| |||||| ||||| | |||||||||||||||    
T  7909 ttctttgcggttgaattaatttgcatttcatccatctattatgatttagattt 7857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 7086 - 7027
Alignment:
Q  27 agtaagttttactcaacactgtattaatatattctttgcggttgaattaatttacatttc 86  Q
    |||||||||||||||    ||||||||||| |||||||||||||||||||||| ||||||    
T  7086 agtaagttttactcagtcttgtattaatatgttctttgcggttgaattaatttgcatttc 7027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 6809 - 6767
Alignment:
Q  102 tttagattttgacggtagaaccatgggaagatacaattatttt 144  Q
    |||| |||||||||||||||||||||||| |||||||| ||||    
T  6809 tttaaattttgacggtagaaccatgggaaaatacaattctttt 6767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 82; Significance: 2e-38; HSPs: 5)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 209 - 375
Target Start/End: Complemental strand, 4064 - 3889
Alignment:
Q  209 tttgtcttctattatgtttttgccttgtccttttc------aactttcagccatattgaaatatcctc--tcacctttgggtttcttatttgaa-aaaac 299  Q
    |||||||| | |||||||||||||||||| |||||      |||||||||||||||| ||||||||||  ||||| |||||||||||||||||  |||||    
T  4064 tttgtctttttttatgtttttgccttgtctttttcttttttaactttcagccatatttaaatatcctccctcacccttgggtttcttatttgatcaaaac 3965  T
Q  300 attaaataaacagaggtagcgacgaagccccattcaaaagatgaaatagaagaagttgctgagccagcagtagaga 375  Q
    | |||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||| || ||| ||||||||    
T  3964 aataaataaacagaggtagctacgaagccccgttcaaaagacgaaatagaagaagttgctaagtcagaagtagaga 3889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 5708 - 5609
Alignment:
Q  46 tgtattaatatatt-ctttgcggttgaattaatttacatttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaattatttt 144  Q
    |||||||||||||| |||||||||||||||||||| |||||| ||||| | |||||||||||||||| || |||||||||||||||||||||||| ||||    
T  5708 tgtattaatatatttctttgcggttgaattaatttgcatttcatccatctattatgatttagatttttaccgtagaaccatgggaagatacaattctttt 5609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 4192 - 4145
Alignment:
Q  144 tgtgaaaatgctagctcttgattgagtgttaatatgcacataagttgg 191  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  4192 tgtgaaaatgctagctctagattgagtgttaatatgcacataagttgg 4145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 4572 - 4509
Alignment:
Q  23 agaaagtaagttttactcaacactgtattaatatattctttgcggttgaattaatttacatttc 86  Q
    |||||||||||||||||||    ||||||||||| |||||||||||||||||||||| ||||||    
T  4572 agaaagtaagttttactcagtcttgtattaatatgttctttgcggttgaattaatttgcatttc 4509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 4248 - 4206
Alignment:
Q  102 tttagattttgacggtagaaccatgggaagatacaattatttt 144  Q
    |||| |||||||||||||||||||||||| |||||||| ||||    
T  4248 tttaaattttgacggtagaaccatgggaaaatacaattctttt 4206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 50667978 - 50668102
Alignment:
Q  20 agtagaaagtaagttttactcaacactgtattaatatattctttgcggttgaattaatttacatttcgtccatttgttatgatttagattttgacggtag 119  Q
    |||||||||||||||| |||| |   |||| | |||| |||||||| ||||||||| ||| || ||||||||| ||| |||||||| ||||||||  |||    
T  50667978 agtagaaagtaagtttcactcgatgttgtaatcatatgttctttgcagttgaattagtttgcacttcgtccatatgtcatgatttaaattttgactttag 50668077  T
Q  120 aaccatgggaagatacaattatttt 144  Q
    ||||||| |||||||||||| ||||    
T  50668078 aaccatgtgaagatacaattttttt 50668102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 50668439 - 50668626
Alignment:
Q  20 agtagaaagtaagttttactcaacac--tgtattaatatattctttgcggttgaattaatttacatttcgtccatttgttatgatttagattttgacggt 117  Q
    |||||||||||||||||||||   |   ||||||||||| |||||||| ||||||||||| | || ||| ||||||||| |||||||||||||||||  |    
T  50668439 agtagaaagtaagttttactcttgatgttgtattaatatgttctttgcagttgaattaatctgcacttcatccatttgtcatgatttagattttgacttt 50668538  T
Q  118 agaaccatgggaagatacaattat--------------tttgtgaaaatgctagctcttgattgagtgttaatatgcacataagttgg 191  Q
    |||| |||| ||| ||| |||| |              ||| ||||||||| |||||||||| |||||||||||||||||||||||||    
T  50668539 agaagcatgtgaaaatagaattctttttgctttactgctttatgaaaatgcaagctcttgatcgagtgttaatatgcacataagttgg 50668626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 3802664 - 3802615
Alignment:
Q  139 tattttgtgaaaatgctagctcttgattgagtgttaatatgcacataagt 188  Q
    |||||| ||||||||| | |||||||||||||||||||||||||||||||    
T  3802664 tattttatgaaaatgcaacctcttgattgagtgttaatatgcacataagt 3802615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 3801812 - 3801754
Alignment:
Q  81 catttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaatt 139  Q
    |||||| ||||| |||||||||||||||||||||  || ||||||| ||||| ||||||    
T  3801812 catttcatccatctgttatgatttagattttgactttaaaaccatgtgaagacacaatt 3801754  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 50667366 - 50667440
Alignment:
Q  70 gaattaatttacatttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaattatttt 144  Q
    |||||||||| || ||| ||| ||||| |||||||||||||||||  ||||||||||  ||||| ||||| ||||    
T  50667366 gaattaattttcacttcatccttttgtcatgatttagattttgactttagaaccatgtcaagatgcaattctttt 50667440  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 3804100 - 3804059
Alignment:
Q  148 aaaatgctagctcttgattgagtgttaatatgcacataagtt 189  Q
    ||||||| ||||||||||||||||||||||||  ||||||||    
T  3804100 aaaatgcaagctcttgattgagtgttaatatgtgcataagtt 3804059  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 50668119 - 50668164
Alignment:
Q  146 tgaaaatgctagctcttgattgagtgttaatatgcacataagttgg 191  Q
    ||||||||| ||||||| ||||| ||||||||||||| ||||||||    
T  50668119 tgaaaatgcaagctcttaattgaatgttaatatgcacgtaagttgg 50668164  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 3802225 - 3802173
Alignment:
Q  139 tattttgtgaaaatgctagctcttgattgagtgttaatatgcacataagttgg 191  Q
    |||||| ||||||| | | |||||| ||||||||||||||||||||| |||||    
T  3802225 tattttatgaaaatacaacctcttgtttgagtgttaatatgcacataggttgg 3802173  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 50669344 - 50669388
Alignment:
Q  147 gaaaatgctagctcttgattgagtgttaatatgcacataagttgg 191  Q
    |||||||||||||  ||||| |||||||||| |||||||||||||    
T  50669344 gaaaatgctagctactgattcagtgttaatacgcacataagttgg 50669388  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 8186021 - 8186079
Alignment:
Q  21 gtagaaagtaagttttactcaacactgtattaatatattctttgcggttgaattaattt 79  Q
    ||||||||||||||||||||||   ||||||||||| |||||||| |||||||||||||    
T  8186021 gtagaaagtaagttttactcaatgttgtattaatatgttctttgcagttgaattaattt 8186079  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 187
Target Start/End: Complemental strand, 4525308 - 4525277
Alignment:
Q  156 agctcttgattgagtgttaatatgcacataag 187  Q
    ||||||||||||||||||||||||||||||||    
T  4525308 agctcttgattgagtgttaatatgcacataag 4525277  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 4522950 - 4522904
Alignment:
Q  141 ttttgtgaaaatgctagctcttgattgagtgttaatatgcacataag 187  Q
    |||| ||||||| | |||||||||||||||||||| |||||||||||    
T  4522950 ttttatgaaaattcaagctcttgattgagtgttaaaatgcacataag 4522904  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 39328272 - 39328310
Alignment:
Q  100 gatttagattttgacggtagaaccatgggaagatacaat 138  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  39328272 gatttagattttgactgtagaaccatgtgaagatacaat 39328310  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 715301 - 715350
Alignment:
Q  30 aagttttactcaacactgtattaatatattctttgcggttgaattaattt 79  Q
    |||||||||||||   ||||||||||| ||||||| ||||||||||||||    
T  715301 aagttttactcaatgttgtattaatatgttctttgtggttgaattaattt 715350  T

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