View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4875-Insertion-1 (Length: 1188)
Name: NF4875-Insertion-1
Description: NF4875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4875-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 130 - 705
Target Start/End: Original strand, 16560046 - 16560598
Alignment:
| Q |
130 |
aattattatatagccatgtcgtctctatttgtgtatacaaaattatcatggttgggcgccgttggagccaaaattccttttcaattttattttaagaaag |
229 |
Q |
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| T |
16560046 |
aattattatatagccatgtcgtctctatttgtgtatacaaaattatcatggttgggcgccgttggagccaaaattccttttcaattttattttaagaaag |
16560145 |
T |
|
| Q |
230 |
atcggattaagagccataacattttcattagtaataattttcaatttttcataagattttctaatgaaaagcataattcaacaacaacatcctagtaaat |
329 |
Q |
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| T |
16560146 |
atcggattaagagccataacattttca----------------atttttcataagattttctaatgaaaaggataattcaacaacaacatcctagtaaat |
16560229 |
T |
|
| Q |
330 |
cattgattaannnnnnnn-attcaaaataaaagtagagaataacattacgcgactaggccaaaacccaaagtaaacagccaaggactttaataacatctg |
428 |
Q |
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| T |
16560230 |
cattgattaatttttttttattcaaaataaaagtagaggataacattacgcgactaggccaaaacccaaagtaaacagccaaggactttaataacatctg |
16560329 |
T |
|
| Q |
429 |
tctcattaaacgtctaaccaaaatacttaaaggggtaaaacattggcgaagaaaaagatattgcatagtaaatagaagttcaagcccttgaaaaacatca |
528 |
Q |
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| T |
16560330 |
tctcattaaacgtcta---------cttaaagggataaaatattggcgaagaaaaagatattgcatagtaaatagaagttcaagcccttgaaaaacatca |
16560420 |
T |
|
| Q |
529 |
acataaatgataatcctggaagctccgacctatttcggttaacaaaatctaaaacac--gaagagattgaatccaccaaacaaaaccattactttagatc |
626 |
Q |
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| T |
16560421 |
acataaatgataatcctggaagctccgacctattttggttaacaaaatctaaaacacaagaagagattgaatccaccaaacaaaaccattactttagatc |
16560520 |
T |
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| Q |
627 |
cctcgagaaataatcttgtctgcgcaacaattgtcttctctttaagatataagaaataatgaagtgcatattcttcgtt |
705 |
Q |
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| T |
16560521 |
ccacgagaaataatcttgtctgcgcaacaattgtcttctc-tcaagatatgagaaataatgaagtgcatatttttcgtt |
16560598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 731 - 1119
Target Start/End: Original strand, 16560627 - 16561029
Alignment:
| Q |
731 |
ctctattaacaaatcattgattactttgttaatagagtaaactaaacacacac----gtactgatatacatattttaaagatgttttaatattacagagt |
826 |
Q |
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| T |
16560627 |
ctctattaacaaatcattgattactttgttaatagagtaaactaaacacacacccacgtactgatatacatattttaaagatgttttaatattacagagt |
16560726 |
T |
|
| Q |
827 |
actagtaatacttcaacacttataataaaaaagttatgttattcgaacatcatatccgacacatgatatatttatctttatctctcttttactttttatc |
926 |
Q |
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| T |
16560727 |
acaaatgatacttcaacacttataataaaaaagtcatgttatttgaacatcatatccgacacatgatatatttatctttatctctcttttactttttatc |
16560826 |
T |
|
| Q |
927 |
atatacaacttatatgaatttaaaaaatac-ataaaatcaaatgacactgtatttttatgtcaaaatataacttctctacgat-aatcatattaaatggg |
1024 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||| || |
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| T |
16560827 |
atatacaacttatatgagtttaaaaaatacaataaaatcaaatgacactgtatttttatgtcaaaatataatttctctacaataaatcatattaaat-gg |
16560925 |
T |
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| Q |
1025 |
ttcgaatgcatatc-acatgt----acacacagccccaaaaaattatgaaatttta--tgtactcattttt--cagtactccattc-gtcatatttatac |
1114 |
Q |
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| T |
16560926 |
ttcgaatgcatatcaacatgttacaacac-cagccccaaaaaattatgaaattttaattgtacttattttttcaagtacttcattcagtcatatttatac |
16561024 |
T |
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| Q |
1115 |
gaaaa |
1119 |
Q |
| |
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||||| |
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| T |
16561025 |
gaaaa |
16561029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 16559958 - 16560045
Alignment:
| Q |
8 |
agaacaacataattgcatccc-tcttcattgtcgtacttactatcacagtctttgcaagcgctagactcacacctcagctgcgaacaa |
94 |
Q |
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| T |
16559958 |
agaacaacataattgcatcccctcttcatcgtcgtacttactatcacagtctttgcaagcgctagactcacgcctcagctgcgaacaa |
16560045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 892 - 957
Target Start/End: Complemental strand, 55573880 - 55573815
Alignment:
| Q |
892 |
atatatttatctttatctctcttttactttttatcatatacaacttatatgaatttaaaaaataca |
957 |
Q |
| |
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|||| ||||||||||||||| | |||||||||||| ||||||||| ||||||||||||||||| |
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| T |
55573880 |
atatgtttatctttatctctttgttactttttatctcttacaacttacgtgaatttaaaaaataca |
55573815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 897 - 938
Target Start/End: Complemental strand, 36646823 - 36646782
Alignment:
| Q |
897 |
tttatctttatctctcttttactttttatcatatacaactta |
938 |
Q |
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| T |
36646823 |
tttatctctatctctcttttactttttaccttatacaactta |
36646782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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