View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4875-Insertion-3 (Length: 545)

Name: NF4875-Insertion-3
Description: NF4875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4875-Insertion-3
NF4875-Insertion-3
[»] chr2 (31 HSPs)
chr2 (185-544)||(13788215-13788572)
chr2 (85-213)||(12489802-12489930)
chr2 (42-213)||(42543346-42543517)
chr2 (42-213)||(44437721-44437892)
chr2 (436-530)||(16497862-16497955)
chr2 (85-173)||(4598602-4598690)
chr2 (437-534)||(17702984-17703081)
chr2 (143-187)||(13788010-13788054)
chr2 (83-213)||(28960211-28960341)
chr2 (146-213)||(7326160-7326227)
chr2 (437-533)||(13561958-13562055)
chr2 (476-533)||(42004895-42004952)
chr2 (146-214)||(12474926-12474994)
chr2 (146-213)||(227404-227471)
chr2 (146-213)||(3635323-3635390)
chr2 (146-213)||(4807810-4807877)
chr2 (98-213)||(12470897-12471012)
chr2 (146-213)||(17670683-17670750)
chr2 (146-213)||(28508893-28508960)
chr2 (146-213)||(30306247-30306314)
chr2 (151-213)||(8197541-8197603)
chr2 (151-213)||(8202301-8202363)
chr2 (84-213)||(5758995-5759124)
chr2 (144-213)||(12520062-12520131)
chr2 (88-173)||(20129641-20129726)
chr2 (160-213)||(42549837-42549890)
chr2 (84-213)||(45367625-45367754)
chr2 (470-510)||(777768-777808)
chr2 (477-533)||(16807609-16807665)
chr2 (477-533)||(16846890-16846946)
chr2 (146-214)||(18424377-18424444)
[»] chr4 (35 HSPs)
chr4 (42-214)||(31897427-31897599)
chr4 (42-213)||(31961266-31961437)
chr4 (86-213)||(42285703-42285830)
chr4 (48-214)||(46372141-46372307)
chr4 (83-173)||(6478723-6478813)
chr4 (83-211)||(17900632-17900760)
chr4 (441-509)||(27653645-27653713)
chr4 (146-213)||(21237073-21237140)
chr4 (83-196)||(10209188-10209299)
chr4 (477-535)||(24157190-24157248)
chr4 (116-173)||(44360271-44360328)
chr4 (160-213)||(46539111-46539164)
chr4 (146-213)||(6957813-6957880)
chr4 (146-213)||(8286654-8286721)
chr4 (442-533)||(22220455-22220546)
chr4 (146-213)||(26356974-26357041)
chr4 (477-524)||(27886048-27886095)
chr4 (146-213)||(31959814-31959881)
chr4 (146-213)||(32633406-32633473)
chr4 (146-213)||(52569515-52569582)
chr4 (146-213)||(53708009-53708076)
chr4 (83-213)||(2589224-2589354)
chr4 (146-212)||(4548237-4548303)
chr4 (146-196)||(6958255-6958305)
chr4 (99-213)||(50869880-50869994)
chr4 (146-215)||(48622541-48622610)
chr4 (146-215)||(51811278-51811345)
chr4 (477-533)||(10573250-10573306)
chr4 (146-214)||(20591305-20591373)
chr4 (146-214)||(23906296-23906364)
chr4 (146-214)||(27450179-27450247)
chr4 (178-214)||(47372951-47372987)
chr4 (149-213)||(50238615-50238679)
chr4 (149-213)||(50238701-50238765)
chr4 (91-167)||(51550295-51550370)
[»] chr7 (23 HSPs)
chr7 (83-214)||(45558482-45558612)
chr7 (441-534)||(24424965-24425057)
chr7 (83-212)||(34745899-34746028)
chr7 (98-216)||(25578027-25578145)
chr7 (146-211)||(24777176-24777241)
chr7 (84-196)||(19119441-19119553)
chr7 (149-213)||(22349838-22349902)
chr7 (149-213)||(48735901-48735965)
chr7 (146-213)||(31840445-31840512)
chr7 (148-213)||(7273317-7273382)
chr7 (146-215)||(34869635-34869704)
chr7 (146-213)||(11594175-11594242)
chr7 (146-213)||(12841275-12841342)
chr7 (146-213)||(28208328-28208395)
chr7 (146-213)||(31682602-31682669)
chr7 (146-213)||(39906372-39906439)
chr7 (148-215)||(48919329-48919396)
chr7 (484-529)||(43224010-43224055)
chr7 (468-537)||(44567127-44567196)
chr7 (146-195)||(49029491-49029540)
chr7 (146-210)||(6375083-6375147)
chr7 (146-214)||(40979927-40979995)
chr7 (470-530)||(42285906-42285966)
[»] chr5 (25 HSPs)
chr5 (83-172)||(1935274-1935363)
chr5 (83-173)||(21916032-21916122)
chr5 (42-173)||(1525755-1525886)
chr5 (90-213)||(28411835-28411958)
chr5 (87-173)||(37065632-37065718)
chr5 (42-210)||(11002424-11002592)
chr5 (149-216)||(2075470-2075537)
chr5 (146-213)||(28976859-28976926)
chr5 (83-211)||(33667587-33667715)
chr5 (146-213)||(12492384-12492451)
chr5 (146-213)||(13561386-13561453)
chr5 (435-533)||(24280958-24281054)
chr5 (435-533)||(24381158-24381254)
chr5 (146-213)||(29816597-29816664)
chr5 (83-173)||(10082785-10082875)
chr5 (476-530)||(14161996-14162050)
chr5 (83-173)||(15369837-15369927)
chr5 (146-212)||(20456988-20457054)
chr5 (83-128)||(2713096-2713141)
chr5 (146-215)||(3302059-3302128)
chr5 (106-211)||(3442873-3442978)
chr5 (168-213)||(23980181-23980226)
chr5 (149-213)||(408494-408558)
chr5 (140-196)||(30639316-30639372)
chr5 (84-128)||(31636005-31636049)
[»] chr8 (15 HSPs)
chr8 (85-173)||(7531684-7531772)
chr8 (48-213)||(39953264-39953429)
chr8 (86-193)||(30812836-30812943)
chr8 (84-213)||(32043743-32043869)
chr8 (87-213)||(38901819-38901945)
chr8 (146-213)||(36545364-36545431)
chr8 (146-213)||(11523723-11523790)
chr8 (470-533)||(14234310-14234373)
chr8 (146-213)||(14742082-14742149)
chr8 (146-196)||(22681483-22681533)
chr8 (146-196)||(40813539-40813589)
chr8 (477-533)||(5295498-5295554)
chr8 (146-210)||(16035730-16035794)
chr8 (84-196)||(16351531-16351642)
chr8 (146-214)||(44529440-44529508)
[»] chr6 (16 HSPs)
chr6 (441-533)||(32193671-32193763)
chr6 (83-173)||(7513429-7513519)
chr6 (83-128)||(38915-38960)
chr6 (149-214)||(2689851-2689916)
chr6 (146-211)||(30789076-30789141)
chr6 (149-196)||(608379-608426)
chr6 (471-530)||(1502834-1502893)
chr6 (146-213)||(31819046-31819113)
chr6 (146-213)||(34143765-34143832)
chr6 (146-213)||(34156381-34156448)
chr6 (155-213)||(10098896-10098954)
chr6 (483-537)||(32429295-32429349)
chr6 (437-533)||(4850587-4850683)
chr6 (146-214)||(9706985-9707053)
chr6 (149-213)||(14031013-14031077)
chr6 (146-214)||(34934829-34934897)
[»] chr1 (24 HSPs)
chr1 (146-213)||(15086137-15086204)
chr1 (86-190)||(28528510-28528614)
chr1 (146-213)||(5113958-5114025)
chr1 (146-216)||(49347390-49347460)
chr1 (146-214)||(28533682-28533750)
chr1 (146-214)||(42337771-42337839)
chr1 (161-213)||(43898439-43898491)
chr1 (146-213)||(1210960-1211027)
chr1 (146-213)||(3777260-3777327)
chr1 (146-213)||(22090311-22090378)
chr1 (146-213)||(25979231-25979298)
chr1 (146-213)||(29577467-29577534)
chr1 (146-213)||(30202130-30202197)
chr1 (86-173)||(40419794-40419880)
chr1 (103-213)||(6641283-6641393)
chr1 (468-533)||(9915439-9915504)
chr1 (83-124)||(15577570-15577611)
chr1 (83-128)||(26016589-26016634)
chr1 (149-214)||(40568409-40568474)
chr1 (156-213)||(51602281-51602338)
chr1 (146-210)||(39140730-39140794)
chr1 (146-210)||(39797216-39797280)
chr1 (146-214)||(43028807-43028875)
chr1 (146-214)||(52921295-52921363)
[»] chr3 (24 HSPs)
chr3 (437-534)||(47823539-47823636)
chr3 (146-213)||(2133612-2133679)
chr3 (146-213)||(47555332-47555399)
chr3 (87-213)||(31454225-31454351)
chr3 (468-533)||(11393541-11393606)
chr3 (83-196)||(27893241-27893354)
chr3 (148-213)||(45834600-45834665)
chr3 (441-529)||(42939938-42940026)
chr3 (146-214)||(47233595-47233663)
chr3 (437-533)||(53200769-53200865)
chr3 (146-213)||(311309-311376)
chr3 (146-213)||(5169047-5169114)
chr3 (146-213)||(12096705-12096772)
chr3 (146-213)||(40273205-40273272)
chr3 (426-533)||(41850344-41850451)
chr3 (146-213)||(52139015-52139082)
chr3 (146-213)||(53519795-53519862)
chr3 (146-211)||(37598171-37598237)
chr3 (441-514)||(54403372-54403443)
chr3 (113-213)||(3987516-3987616)
chr3 (146-213)||(25191592-25191659)
chr3 (146-214)||(31566160-31566228)
chr3 (437-533)||(50088405-50088501)
chr3 (441-533)||(50646199-50646291)
[»] scaffold1318 (1 HSPs)
scaffold1318 (146-213)||(546-613)
[»] scaffold0026 (1 HSPs)
scaffold0026 (437-533)||(4105-4202)
[»] scaffold0168 (1 HSPs)
scaffold0168 (146-213)||(28889-28956)
[»] scaffold0328 (1 HSPs)
scaffold0328 (180-213)||(13657-13690)
[»] scaffold0565 (1 HSPs)
scaffold0565 (437-533)||(9733-9829)
[»] scaffold0113 (1 HSPs)
scaffold0113 (149-213)||(11549-11613)
[»] scaffold0024 (1 HSPs)
scaffold0024 (146-214)||(82933-83001)


Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 185 - 544
Target Start/End: Original strand, 13788215 - 13788572
Alignment:
Q  185 ttagtgggataatgtttgattgttgttgtaaacttagatatcttccgtgcacaactgcgacgactaattccacacgcaaagttgttgcatgccaaatggc 284  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  13788215 ttagtgggataatgtttgattgttgttgtaaact-agataccttccatgcacaactacgacgactaattccacacgcaaagttgttgcatgccaaatggt 13788313  T
Q  285 gaattaaaactcaggaccttaattaagttagaagatatttgtgtcgtctgatctaagcgttttatgtacttatactttgtttggtacgagggaagcgaga 384  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| ||||||||||||||||    
T  13788314 gaattaaaagtcaggaccttagttaagttagaagatatttgtgtcgtttgatctaagcgctttatgtacttatactttatttgatacgagggaagcgaga 13788413  T
Q  385 gaaaaatcacagaaaagaaaatacacttttcaactattttctactctccacatttcaaaatgaatgtcagtttaacaaaaatgatttgttctaaaataaa 484  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  13788414 gaaaaat--cagaaaagaaaatacacttttcaactattttctactctccacatttcaaaatcaatgtcagtttaacaaaaatgatttgttccaaaataaa 13788511  T
Q  485 tgtcatttttaatttctaatgcaatattaattatttc-tttccaattgtatcatgctatta 544  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13788512 tgtcattttcaatttctaatgcaatattaattatttcttttccaattgtatcatgctatta 13788572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 85 - 213
Target Start/End: Complemental strand, 12489930 - 12489802
Alignment:
Q  85 gagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaaccctac 184  Q
    |||||||||||||||||||| ||||||||| ||||||||||||| ||| | || |||| | |||||| || |||| |||||||||||||  | |||| ||    
T  12489930 gagaaactattaggaaggatctagagataaatgagttggagaaagacatggtttttgatataacactttggcgtcgtttgattcatgtagccgaccccac 12489831  T
Q  185 ttagtgggataatgtttgattgttgttgt 213  Q
    |||||||||||| | ||| ||||||||||    
T  12489830 ttagtgggataaggcttggttgttgttgt 12489802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 213
Target Start/End: Original strand, 42543346 - 42543517
Alignment:
Q  42 agtcatatcactagaggtaggggttgacctnnnnnnnntagaagagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttg 141  Q
    ||||| |||||||||||||||||| |||||        || |||||||||||||||||||||| ||||||||| ||||||||||||| ||  | || |||    
T  42543346 agtcagatcactagaggtaggggtagacctagaaaaactataagagaaactattaggaaggatctagagataaatgagttggagaaagacgtgctttttg 42543445  T
Q  142 acaaaacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    | | ||| ||||| |||  |||||||||||||  |  ||| |||||||||||||| | ||| ||||||||||    
T  42543446 atagaacgctatggcgttgtttgattcatgtagccggccccacttagtgggataaggcttggttgttgttgt 42543517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 213
Target Start/End: Complemental strand, 44437892 - 44437721
Alignment:
Q  42 agtcatatcactagaggtaggggttgacctnnnnnnnntagaagagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttg 141  Q
    ||||| |||||||||||||||||| |||||        || | |||||||||||| ||||||| ||||||||| ||||||||||||| ||| | || |||    
T  44437892 agtcagatcactagaggtaggggtagacctagaaaaactatatgagaaactattaagaaggatctagagataaatgagttggagaaaaacatggtttttg 44437793  T
Q  142 acaaaacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    | | ||||||||| |||  ||| |||||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  44437792 atagaacactatggcgttgtttaattcatgtagccgaccccacttagtgggataaggcttggttgttgttgt 44437721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 436 - 530
Target Start/End: Complemental strand, 16497955 - 16497862
Alignment:
Q  436 atttcaaaatgaatgtcagtttaacaaaaatgatttgttctaaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaatt 530  Q
    |||| |||| || ||||| |||||||||||| ||||||| ||||| |||||||||||||||||| ||||| |||||||| ||||| |||||||||    
T  16497955 attttaaaaagagtgtcactttaacaaaaataatttgttttaaaa-aaatgtcatttttaatttttaatgtaatattaactatttatttccaatt 16497862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 4598690 - 4598602
Alignment:
Q  85 gagaaactattaggaaggatatagagataagtgagttggagaaataca-cgattcttgacaaaacactatgacgtcatttgattcatgta 173  Q
    ||||| |||||||||||||| ||||||||| ||||||||||||| |||  |||| |||| | ||||||||| ||||||||||||||||||    
T  4598690 gagaagctattaggaaggatctagagataaatgagttggagaaagacatagatt-ttgatagaacactatggcgtcatttgattcatgta 4598602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 437 - 534
Target Start/End: Original strand, 17702984 - 17703081
Alignment:
Q  437 tttcaaaatgaatgtcagtttaacaaaaatgatttgttctaaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaattgtat 534  Q
    ||||||||||| ||||  |||||||||||| ||||||| |||||| ||||||| ||| |||||  ||||||||| ||| | ||||||||| |||||||    
T  17702984 tttcaaaatgagtgtcgctttaacaaaaataatttgttttaaaatgaatgtcactttcaattttcaatgcaataataactttttctttccgattgtat 17703081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 13788010 - 13788054
Alignment:
Q  143 caaaacactatgacgtcatttgattcatgtactcaaccctactta 187  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  13788010 caaaacattatgacgtcatttgattcatgtactcaaccctactta 13788054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 83 - 213
Target Start/End: Complemental strand, 28960341 - 28960211
Alignment:
Q  83 aagagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaaccct 182  Q
    |||||||||| ||| ||||||| ||||||||| ||||||||||||| | | | || |||| | | |||||||  ||| ||||||||||||| || || |     
T  28960341 aagagaaactgttaagaaggatctagagataaatgagttggagaaagatatggtttttgatagagcactatggtgtcgtttgattcatgtagtcgactcc 28960242  T
Q  183 acttagtgggataatgtttgattgttgttgt 213  Q
    | |||||||||||| | ||| ||||||||||    
T  28960241 atttagtgggataaggcttggttgttgttgt 28960211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 7326227 - 7326160
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  |||||| |||||||||||||| | ||| ||||||||||    
T  7326227 aacactatggcgtcatttgatccatgtagccaaccccacttagtgggataaggcttggttgttgttgt 7326160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 437 - 533
Target Start/End: Original strand, 13561958 - 13562055
Alignment:
Q  437 tttcaaaatgaatgtcagtttaacaaaaatga-tttgttctaaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaattgta 533  Q
    ||||||||||| ||||| |||| | ||||| | ||||||  ||||||||||||| ||| | |||||||||||||| ||| | ||||||| ||||||||    
T  13561958 tttcaaaatgagtgtcattttagccaaaataaatttgtttcaaaataaatgtcactttcagtttctaatgcaataataactttttcttttcaattgta 13562055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 476 - 533
Target Start/End: Original strand, 42004895 - 42004952
Alignment:
Q  476 taaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaattgta 533  Q
    |||||| |||||||||||||||||| ||||||||| ||||| ||| ||| ||||||||    
T  42004895 taaaatgaatgtcatttttaatttccaatgcaataataattttttattttcaattgta 42004952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 12474994 - 12474926
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgta 214  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| |||||||||||    
T  12474994 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgta 12474926  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 227404 - 227471
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  227404 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 227471  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 3635390 - 3635323
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  3635390 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 3635323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 4807810 - 4807877
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  4807810 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 4807877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 213
Target Start/End: Complemental strand, 12471012 - 12470897
Alignment:
Q  98 gaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaaccctacttagtgggataat 197  Q
    ||||||| ||||||||| ||||||||||||| ||| | || |||| | | ||||||| |||| |||| ||||||||  | |||| | ||||||||||||     
T  12471012 gaaggatctagagataaatgagttggagaaagacatggtttttgatatatcactatggcgtcgtttgcttcatgtagccgaccccatttagtgggataag 12470913  T
Q  198 gtttgattgttgttgt 213  Q
    | ||| | ||||||||    
T  12470912 gcttggtggttgttgt 12470897  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 17670683 - 17670750
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  17670683 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 17670750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 28508893 - 28508960
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  28508893 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 28508960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 30306247 - 30306314
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  30306247 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 30306314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 8197603 - 8197541
Alignment:
Q  151 tatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    |||| |||| |||||| ||||||  | ||||||||||||||||||||| ||| ||||||||||    
T  8197603 tatggcgtcgtttgatccatgtagccgaccctacttagtgggataatgcttggttgttgttgt 8197541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 8202363 - 8202301
Alignment:
Q  151 tatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    |||| |||| |||||| ||||||  | ||||||||||||||||||||| ||| ||||||||||    
T  8202363 tatggcgtcgtttgatccatgtagccgaccctacttagtgggataatgcttggttgttgttgt 8202301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 213
Target Start/End: Complemental strand, 5759124 - 5758995
Alignment:
Q  84 agagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaacccta 183  Q
    ||||||||||  | ||||||| ||||||| | ||||||||||||| ||| | || |||| | |||||||||  ||| ||||||||| |||    |||| |    
T  5759124 agagaaactaccaagaaggatctagagatcaatgagttggagaaagacatggtttttgatagaacactatggtgtcgtttgattcaggtagctgacccca 5759025  T
Q  184 cttagtgggataatgtttgattgttgttgt 213  Q
    |||||| |||||| | ||| ||||||||||    
T  5759024 cttagttggataaggcttggttgttgttgt 5758995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 12520131 - 12520062
Alignment:
Q  144 aaaacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||||| ||| ||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  12520131 aaaacactatggcgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 12520062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 20129726 - 20129641
Alignment:
Q  88 aaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgta 173  Q
    ||||||| | |||| || ||||||| | ||| ||||||||||||| | || || | | |||||||||||||| |||||||||||||    
T  20129726 aaactatcaagaagaatctagagattaatgaattggagaaatacatggttgttaatataacactatgacgtcgtttgattcatgta 20129641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 42549890 - 42549837
Alignment:
Q  160 atttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||||||||  |||||| |||||||||||||| | ||| ||||||||||    
T  42549890 atttgattcatgtagccaaccccacttagtgggataaagcttggttgttgttgt 42549837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 213
Target Start/End: Complemental strand, 45367754 - 45367625
Alignment:
Q  84 agagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaacccta 183  Q
    |||||||  ||||| |||||| ||||| ||| |||||||||   | | | |||| |||| | ||||||||||||||||||||| |||||   | |||| |    
T  45367754 agagaaatcattagaaaggatttagaggtaaatgagttggatccaaatatgatttttgatagaacactatgacgtcatttgatccatgtcgccgacccca 45367655  T
Q  184 cttagtgggataatgtttgattgttgttgt 213  Q
    |||||||||||||   ||| ||||||||||    
T  45367654 cttagtgggataaaacttgtttgttgttgt 45367625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 777768 - 777808
Alignment:
Q  470 ttgttctaaaataaatgtcatttttaatttctaatgcaata 510  Q
    ||||| |||||| ||||||||||| ||||||||||||||||    
T  777768 ttgttttaaaatgaatgtcattttcaatttctaatgcaata 777808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 533
Target Start/End: Complemental strand, 16807665 - 16807609
Alignment:
Q  477 aaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaattgta 533  Q
    ||||||||||||| ||| | |||| ||||||||| ||||| ||||||| ||||||||    
T  16807665 aaaataaatgtcactttaagtttccaatgcaataataattttttcttttcaattgta 16807609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 533
Target Start/End: Complemental strand, 16846946 - 16846890
Alignment:
Q  477 aaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaattgta 533  Q
    ||||||||||||| ||| | |||| ||||||||| ||||| ||||||| ||||||||    
T  16846946 aaaataaatgtcactttaagtttccaatgcaataataattttttcttttcaattgta 16846890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 18424444 - 18424377
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgta 214  Q
    ||||||||||||||||||||| ||||||| |  ||| ||||||||||||||   ||| |||||||||||    
T  18424444 aacactatgacgtcatttgatccatgtac-cgtccccacttagtgggataagacttggttgttgttgta 18424377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 42 - 214
Target Start/End: Complemental strand, 31897599 - 31897427
Alignment:
Q  42 agtcatatcactagaggtaggggttgacctnnnnnnnntagaagagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttg 141  Q
    ||||| |||||||||||||||||| |||||        || |||||||||||||||||||||| ||||||||| ||||||||||||| ||| | || |||    
T  31897599 agtcagatcactagaggtaggggtagacctagaaaaactataagagaaactattaggaaggatctagagataaatgagttggagaaagacatggttgttg 31897500  T
Q  142 acaaaacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgta 214  Q
    | | |||||||||||| | |||||||||||||  |||||  |||||||||||||| | | | |||||||||||    
T  31897499 atagaacactatgacgccgtttgattcatgtagccaacctcacttagtgggataaggctcggttgttgttgta 31897427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 42 - 213
Target Start/End: Complemental strand, 31961437 - 31961266
Alignment:
Q  42 agtcatatcactagaggtaggggttgacctnnnnnnnntagaagagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttg 141  Q
    ||||| |||||||||||||||||| |||||        || |||||||||||||||||| ||| ||||||||| ||||||||||||| ||| | || |||    
T  31961437 agtcaaatcactagaggtaggggtagacctagaaaaactataagagaaactattaggaaagatctagagataaatgagttggagaaagacatggttgttg 31961338  T
Q  142 acaaaacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    | | |||||||||||||| |||||||||||||  | |||  |||||||||||||| | ||| ||||||||||    
T  31961337 atagaacactatgacgtcgtttgattcatgtagccgacctcacttagtgggataaggcttggttgttgttgt 31961266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 86 - 213
Target Start/End: Complemental strand, 42285830 - 42285703
Alignment:
Q  86 agaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaaccctact 185  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| ||| | || |||| | || |||||| | |  |||||||||||||  |||||| |||    
T  42285830 agaaactattaggaaggatctagagataaatgagttggagaaagacatggtttttgatagaatactatggcattgtttgattcatgtagccaaccccact 42285731  T
Q  186 tagtgggataatgtttgattgttgttgt 213  Q
    |||| ||||||   ||| ||||||||||    
T  42285730 tagttggataagacttggttgttgttgt 42285703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 214
Target Start/End: Original strand, 46372141 - 46372307
Alignment:
Q  48 atcactagaggtaggggttgacctnnnnnnnntagaagagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaa 147  Q
    |||||||||||||||||| |||||        || |||||||||||||||||||||| ||||||||| ||||||||||||| ||| | || |||| | ||    
T  46372141 atcactagaggtaggggtagacctagaaaaactataagagaaactattaggaaggatctagagataaatgagttggagaaagacatggtttttgatagaa 46372240  T
Q  148 cactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgta 214  Q
    |||  |  |||| |||||||||||||    |||| ||||||| || ||| | ||| |||||||||||    
T  46372241 caccgtagcgtcctttgattcatgtagctgaccccacttagttgggtaaggcttggttgttgttgta 46372307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 6478813 - 6478723
Alignment:
Q  83 aagagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgta 173  Q
    |||||||||||||||||||||| ||||| ||| |||||| |||||| ||| | || |||| | ||||||||  |||| |||||||||||||    
T  6478813 aagagaaactattaggaaggatctagaggtaaatgagttagagaaagacatggtttttgatacaacactatagcgtcctttgattcatgta 6478723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 211
Target Start/End: Original strand, 17900632 - 17900760
Alignment:
Q  83 aagagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaaccct 182  Q
    |||||||||||| ||||| ||||||||||||| ||||||| ||||| ||| | || || | | | ||||||| |||  |||||||||| ||    ||||     
T  17900632 aagagaaactatcaggaaagatatagagataaatgagttgtagaaagacatggtttttaatagagcactatggcgttgtttgattcatttagctgacccc 17900731  T
Q  183 acttagtgggataatgtttgattgttgtt 211  Q
    |||||||||||||| | ||||||||||||    
T  17900732 acttagtgggataaggcttgattgttgtt 17900760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 509
Target Start/End: Original strand, 27653645 - 27653713
Alignment:
Q  441 aaaatgaatgtcagtttaacaaaaatgatttgttctaaaataaatgtcatttttaatttctaatgcaat 509  Q
    ||||||| ||||  |||||| ||||| | ||||| |||||||||||||||||||| |||||||||||||    
T  27653645 aaaatgagtgtcgttttaactaaaataaattgttttaaaataaatgtcatttttagtttctaatgcaat 27653713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 21237073 - 21237140
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  |||||| |||||||||||||| | ||| ||||||||||    
T  21237073 aacactatggcgtcatttgatacatgtagccaaccccacttagtgggataaggattggttgttgttgt 21237140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 196
Target Start/End: Original strand, 10209188 - 10209299
Alignment:
Q  83 aagagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaaccct 182  Q
    |||||||||||||| ||||||| ||||||| | ||||||||||||| ||| | || |||| | |||||  || |||| ||||||||| |||  | ||||     
T  10209188 aagagaaactattaagaaggatctagagattaatgagttggagaaagacatggtttttgatagaacac--tggcgtcgtttgattcaagtagccgacccc 10209285  T
Q  183 acttagtgggataa 196  Q
    ||||||||||||||    
T  10209286 acttagtgggataa 10209299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 535
Target Start/End: Original strand, 24157190 - 24157248
Alignment:
Q  477 aaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaattgtatc 535  Q
    ||||||||||||| ||||| |||||||||||||| ||||| |||||||  |||||||||    
T  24157190 aaaataaatgtcaattttagtttctaatgcaataataattttttctttttaattgtatc 24157248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 44360271 - 44360328
Alignment:
Q  116 tgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgta 173  Q
    ||||||||||||| ||||| || |||| | |||||||||||||| |||||||||||||    
T  44360271 tgagttggagaaagacacggtttttgatagaacactatgacgtcgtttgattcatgta 44360328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 46539164 - 46539111
Alignment:
Q  160 atttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||||||||  |||||| |||||||||||||| ||||| ||||||||||    
T  46539164 atttgattcatgtaggcaaccccacttagtgggataaggtttgcttgttgttgt 46539111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 6957813 - 6957880
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||||||||||||||| ||||||  | | || |||||||||||||| | ||| ||||||||||    
T  6957813 aacactatgacgtcatttgatccatgtagccgatcccacttagtgggataaggcttggttgttgttgt 6957880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 8286654 - 8286721
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||||||||||||||| ||||||  |  ||| |||||||||||||| | ||| ||||||||||    
T  8286654 aacactatgacgtcatttgatccatgtagccgcccccacttagtgggataaggcttggttgttgttgt 8286721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 533
Target Start/End: Complemental strand, 22220546 - 22220455
Alignment:
Q  442 aaatgaatgtcagtttaacaaaaatgatttgttctaaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaattgta 533  Q
    |||||| ||||| |||| ||||||  | |||||  ||||||||||||||||| |||||  ||||||||| ||| | ||||||| ||||||||    
T  22220546 aaatgagtgtcactttagcaaaaaaaaattgtttcaaaataaatgtcattttcaattttcaatgcaataataactttttcttttcaattgta 22220455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 26356974 - 26357041
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    |||||||||  ||| ||||||||||||| ||| ||| |||||||||||||| | ||| ||||||||||    
T  26356974 aacactatgttgtcgtttgattcatgtaatcagccccacttagtgggataaggcttggttgttgttgt 26357041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 524
Target Start/End: Complemental strand, 27886095 - 27886048
Alignment:
Q  477 aaaataaatgtcatttttaatttctaatgcaatattaattatttcttt 524  Q
    |||||||||||||||||||||||| ||||||||| ||||  |||||||    
T  27886095 aaaataaatgtcatttttaatttcaaatgcaataataatattttcttt 27886048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 31959881 - 31959814
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  31959881 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 31959814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 32633473 - 32633406
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  |||||| ||||||||||| || | ||| ||||||||||    
T  32633473 aacactatggcgtcatttgatacatgtagccaaccccacttagtgggaaaaggcttggttgttgttgt 32633406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 52569582 - 52569515
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  52569582 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 52569515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 53708009 - 53708076
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||||||||||||||| ||| || || ||   |||||||||||||| | ||||||||||||||    
T  53708009 aacactatgacgtcatttgatccatttagtcgacatcacttagtgggataaggcttgattgttgttgt 53708076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 213
Target Start/End: Original strand, 2589224 - 2589354
Alignment:
Q  83 aagagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaaccct 182  Q
    |||||||||||| | || |||| ||||||| | |||||||||  || | | | || |||| | ||||||||| |||| |||||||||||||   |||||     
T  2589224 aagagaaactatcaagatggatctagagattaatgagttggatgaaaatatggtttttgatagaacactatggcgtcgtttgattcatgtagctaacccc 2589323  T
Q  183 acttagtgggataatgtttgattgttgttgt 213  Q
    | |||||||||||| | ||| ||||||||||    
T  2589324 agttagtgggataaggcttggttgttgttgt 2589354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 4548237 - 4548303
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttg 212  Q
    ||||||| | ||| ||||||| ||||||  |||||| |||||||||||||||| ||| |||||||||    
T  4548237 aacactaaggcgtaatttgatccatgtagccaacccaacttagtgggataatgcttggttgttgttg 4548303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 6958305 - 6958255
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataa 196  Q
    ||||||||| |||| |||||||||||||  | |||||||||||||||||||    
T  6958305 aacactatggcgtcgtttgattcatgtagccgaccctacttagtgggataa 6958255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 50869994 - 50869880
Alignment:
Q  99 aaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatg 198  Q
    |||||| ||||||||| |||||| |||||| ||| | || |||  | ||||||||| |||| ||||||||||| |    |||| |||||||||||||| |    
T  50869994 aaggatctagagataaatgagttagagaaagacatggtttttggtagaacactatggcgtcgtttgattcatgcagctgaccccacttagtgggataagg 50869895  T
Q  199 tttgattgttgttgt 213  Q
     ||| ||||||||||    
T  50869894 cttggttgttgttgt 50869880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 48622610 - 48622541
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgtaa 215  Q
    ||||||||| |||||||| || ||||||  | |||| |||||||||||||| | ||| ||||||||||||    
T  48622610 aacactatggcgtcatttaatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtaa 48622541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 51811345 - 51811278
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgtaa 215  Q
    ||||||||||||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||||    
T  51811345 aacactatgacgtcatttgatccatgtagccgaccc-acttagtgggataaggcttg-ttgttgttgtaa 51811278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 533
Target Start/End: Complemental strand, 10573306 - 10573250
Alignment:
Q  477 aaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaattgta 533  Q
    ||||| ||||||||||||| |||| ||||||||| ||| | ||||||| ||||||||    
T  10573306 aaaatgaatgtcatttttagtttccaatgcaataataactttttcttttcaattgta 10573250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 20591373 - 20591305
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgta 214  Q
    ||||| ||||||| ||||||||||| || || |||||  ||||||||||||   |||||||||||||||    
T  20591373 aacacaatgacgtaatttgattcatatattcgaccctttttagtgggataagacttgattgttgttgta 20591305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 23906364 - 23906296
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgta 214  Q
    ||||||||| ||||||||||| ||||||    |||| |||||||||||||| | ||| |||||||||||    
T  23906364 aacactatggcgtcatttgatccatgtagctgaccccacttagtgggataaggcttggttgttgttgta 23906296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 27450247 - 27450179
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgta 214  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||| |||||||    
T  27450247 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgctgttgta 27450179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 47372951 - 47372987
Alignment:
Q  178 accctacttagtgggataatgtttgattgttgttgta 214  Q
    ||||||||||||||||||| | |||||||||||||||    
T  47372951 accctacttagtgggataaggcttgattgttgttgta 47372987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 50238679 - 50238615
Alignment:
Q  149 actatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    |||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  50238679 actatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 50238615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 50238765 - 50238701
Alignment:
Q  149 actatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    |||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  50238765 actatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 50238701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 51550370 - 51550295
Alignment:
Q  91 ctattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgatt 167  Q
    |||||||||||||| ||||||||| |||||| |||||| ||| || | |||| | |||| |||| ||||||||||||    
T  51550370 ctattaggaaggatctagagataaatgagtt-gagaaagacatgacttttgatagaacattatgtcgtcatttgatt 51550295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 83 - 214
Target Start/End: Original strand, 45558482 - 45558612
Alignment:
Q  83 aagagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaaccct 182  Q
    ||||||||||||| |||||||| ||||||||| |||||||| |||| ||| | || |||| | ||||||||| |||||||||||||||||| |  ||||     
T  45558482 aagagaaactattgggaaggatctagagataaatgagttggtgaaagacatggtttttgatagaacactatggcgtcatttgattcatgtagttgacccc 45558581  T
Q  183 acttagtgggataatgtttgattgttgttgta 214  Q
     |||||| |||||| ||||| |||||||||||    
T  45558582 gcttagt-ggataaggtttggttgttgttgta 45558612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 441 - 534
Target Start/End: Complemental strand, 24425057 - 24424965
Alignment:
Q  441 aaaatgaatgtcagtttaacaaaaatgatttgttctaaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaattgtat 534  Q
    ||||||||||| | || ||||||||  | |||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  24425057 aaaatgaatgtgacttgaacaaaaaa-agttgttccaaaatgaatgttatttttaatttctaatgcaatattaattatttcttttcaattgtat 24424965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 34745899 - 34746028
Alignment:
Q  83 aagagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaaccct 182  Q
    |||||||||||||||||||||| || |||||| ||||||||||||| ||| | || |||| | ||| ||||| |||  |||||||||||||  | ||||     
T  34745899 aagagaaactattaggaaggatctaaagataaatgagttggagaaaaacatggtttttgatagaacgctatggcgttgtttgattcatgtagccgacccc 34745998  T
Q  183 acttagtgggataatgtttgattgttgttg 212  Q
    |||||||||||||| | ||| |||||||||    
T  34745999 acttagtgggataaggcttggttgttgttg 34746028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 98 - 216
Target Start/End: Original strand, 25578027 - 25578145
Alignment:
Q  98 gaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaaccctacttagtgggataat 197  Q
    ||||||| ||||||| | ||| ||||||||| ||| | || |||| ||||||||||| |||  || ||||| ||||  ||| |||||||||||||||||     
T  25578027 gaaggatctagagattaatgaattggagaaagacatggtttttgataaaacactatggcgttgttagattcgtgtagccaaacctacttagtgggataag 25578126  T
Q  198 gtttgattgttgttgtaaa 216  Q
    | ||| |||||||||||||    
T  25578127 gattggttgttgttgtaaa 25578145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 24777176 - 24777241
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgtt 211  Q
    ||||||||||||||||||||||||||||  | | ||||||||||||||||| | ||| ||||||||    
T  24777176 aacactatgacgtcatttgattcatgtagccgatcctacttagtgggataaagcttggttgttgtt 24777241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 196
Target Start/End: Complemental strand, 19119553 - 19119441
Alignment:
Q  84 agagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaacccta 183  Q
    ||||||||||| | || |||| ||||||| | |||||| |||||| ||| |  | |||| | |||||||||||||| |||||||||||||  | |||| |    
T  19119553 agagaaactatcaagatggatctagagatcaatgagtttgagaaagacatggcttttgatacaacactatgacgtcgtttgattcatgtagccgacccca 19119454  T
Q  184 cttagtgggataa 196  Q
    |||||||||||||    
T  19119453 cttagtgggataa 19119441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 22349838 - 22349902
Alignment:
Q  149 actatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    |||||| ||||||||||| |||||| || |||| |||||||||||||| | ||||||||||||||    
T  22349838 actatggcgtcatttgatccatgtagtcgaccccacttagtgggataaggcttgattgttgttgt 22349902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 48735965 - 48735901
Alignment:
Q  149 actatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    |||||| |||| |||||||||||||  |||||| |||||||||||||| ||||| ||||||||||    
T  48735965 actatggcgtcgtttgattcatgtagccaaccccacttagtgggataaggtttggttgttgttgt 48735901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 31840445 - 31840512
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| |||| |||||||||||||  | ||||||||||||||||||| | ||| ||||||||||    
T  31840445 aacactatggcgtcgtttgattcatgtagcctaccctacttagtgggataaggcttggttgttgttgt 31840512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 7273317 - 7273382
Alignment:
Q  148 cactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||||| ||||||| ||||||  | |||| |||||||||||||| | ||||||||||||||    
T  7273317 cactatgacgtaatttgatccatgtagccgaccccacttagtgggataaggcttgattgttgttgt 7273382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 34869635 - 34869704
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgtaa 215  Q
    ||||||||| ||||||||||| ||||||  | |||||| |||||||||||| | ||| ||||||||||||    
T  34869635 aacactatggcgtcatttgatccatgtagccgaccctaattagtgggataaggcttggttgttgttgtaa 34869704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 11594175 - 11594242
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  11594175 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 11594242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 12841342 - 12841275
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  12841342 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 12841275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 28208395 - 28208328
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  28208395 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 28208328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 31682669 - 31682602
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  31682669 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 31682602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 39906439 - 39906372
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  39906439 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 39906372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 48919329 - 48919396
Alignment:
Q  148 cactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgtaa 215  Q
    ||||||| ||||||||||| |||||| || |||| ||||| |||||||| | ||| ||||||||||||    
T  48919329 cactatggcgtcatttgatccatgtagtcgaccccacttaatgggataaggcttggttgttgttgtaa 48919396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 529
Target Start/End: Complemental strand, 43224055 - 43224010
Alignment:
Q  484 atgtcatttttaatttctaatgcaatattaattatttctttccaat 529  Q
    |||| |||||||||||||||| |||||||||| |||||||| ||||    
T  43224055 atgttatttttaatttctaatacaatattaatcatttcttttcaat 43224010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 537
Target Start/End: Complemental strand, 44567196 - 44567127
Alignment:
Q  468 atttgttctaaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaattgtatcat 537  Q
    ||||||| |||||| ||||||| ||| |||||  ||||||||| ||| | ||||||| ||||||||||||    
T  44567196 atttgttttaaaatgaatgtcactttcaattttcaatgcaataataaatttttcttttcaattgtatcat 44567127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 49029491 - 49029540
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggata 195  Q
    ||||||||| ||||||||||| ||||||  |||||| |||||||||||||    
T  49029491 aacactatggcgtcatttgatccatgtagccaaccccacttagtgggata 49029540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 6375083 - 6375147
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgt 210  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| |||||||    
T  6375083 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgt 6375147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 40979995 - 40979927
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgta 214  Q
    ||||||||| ||| ||||||| ||||||  | |||| |||||||||||||| | ||| |||||||||||    
T  40979995 aacactatggcgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgta 40979927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 530
Target Start/End: Original strand, 42285906 - 42285966
Alignment:
Q  470 ttgttctaaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaatt 530  Q
    ||||| |||||| ||||||||||| | |||| ||||||||| ||||| ||||||| |||||    
T  42285906 ttgttttaaaatgaatgtcattttcagtttccaatgcaataataattttttcttttcaatt 42285966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 1935274 - 1935363
Alignment:
Q  83 aagagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgt 172  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||| ||| | || |||||| |||||||||  ||| ||||||||||||    
T  1935274 aagagaaactattaggaaggatctagagataaatgagttggagaaagacaaggtttttgacagaacactatggtgtcgtttgattcatgt 1935363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 21916032 - 21916122
Alignment:
Q  83 aagagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgta 173  Q
    ||||||||| |||||||||||| ||||||||| |||||||||||||||||  ||| |||| | ||| ||||||| || |||||||||||||    
T  21916032 aagagaaacaattaggaaggatctagagataaatgagttggagaaatacattatttttgatagaactctatgacatcgtttgattcatgta 21916122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 42 - 173
Target Start/End: Original strand, 1525755 - 1525886
Alignment:
Q  42 agtcatatcactagaggtaggggttgacctnnnnnnnntagaagagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttg 141  Q
    ||||| |||||||||||||||||| |||||        || ||||||||||||||||||||||  |||||||| ||||||||||||| ||| | || |||    
T  1525755 agtcagatcactagaggtaggggtagacctagaaaaactacaagagaaactattaggaaggatccagagataaatgagttggagaaagacatggtttttg 1525854  T
Q  142 acaaaacactatgacgtcatttgattcatgta 173  Q
    | | ||| ||||| |||  |||||||||||||    
T  1525855 atagaacgctatggcgttgtttgattcatgta 1525886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 90 - 213
Target Start/End: Original strand, 28411835 - 28411958
Alignment:
Q  90 actattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaaccctacttagt 189  Q
    ||||||||||||||| ||||||||| ||| ||||||||| ||| | ||  ||| | ||||||||| |||  |||||||||||||  | |||| |||||||    
T  28411835 actattaggaaggatctagagataaatgacttggagaaaaacatgttttctgatagaacactatggcgttgtttgattcatgtagccgaccccacttagt 28411934  T
Q  190 gggataatgtttgattgttgttgt 213  Q
    ||||||| | ||| ||||||||||    
T  28411935 gggataaggcttggttgttgttgt 28411958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 173
Target Start/End: Original strand, 37065632 - 37065718
Alignment:
Q  87 gaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgta 173  Q
    |||||||||||||||||| ||||||||| ||||||||||||| ||| | || |||| | | |||||||| ||| |||||||||||||    
T  37065632 gaaactattaggaaggatctagagataaatgagttggagaaagacatggtttttgatagagcactatgaagtcgtttgattcatgta 37065718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 42 - 210
Target Start/End: Complemental strand, 11002592 - 11002424
Alignment:
Q  42 agtcatatcactagaggtaggggttgacctnnnnnnnntagaagagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttg 141  Q
    ||||| |||||||||||| ||||| |||||        || |||| |||||||||| || ||| ||||||||| |||||||||||||  ||   || |||    
T  11002592 agtcagatcactagaggttggggtagacctagaaaaactataagacaaactattagtaacgatctagagataaatgagttggagaaaggcatagtttttg 11002493  T
Q  142 acaaaacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgt 210  Q
    | | ||||||||| | |  ||||||||||||| || ||||||||||||||||||| | ||| |||||||    
T  11002492 atagaacactatggcattgtttgattcatgtagtcgaccctacttagtgggataaggcttggttgttgt 11002424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 2075537 - 2075470
Alignment:
Q  149 actatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgtaaa 216  Q
    |||||| ||||||||||||||||||  |||||| |||||||||||||| | |||||||||||| ||||    
T  2075537 actatggcgtcatttgattcatgtagccaaccccacttagtgggataaggcttgattgttgttataaa 2075470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 28976926 - 28976859
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||||||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  28976926 aacactatggcgtcatttgattcatgtagccgaccccacttagtgggataaggcttggttgttgttgt 28976859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 211
Target Start/End: Original strand, 33667587 - 33667715
Alignment:
Q  83 aagagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaaccct 182  Q
    |||||||  ||||| ||||||| ||||||| | ||||||||||||| ||| | || |||| | |||||| || |||  |||||||| ||||  ||||||     
T  33667587 aagagaagttattaagaaggatctagagattaatgagttggagaaagacatggtttttgatagaacactttggcgttgtttgattcgtgtagccaacccc 33667686  T
Q  183 acttagtgggataatgtttgattgttgtt 211  Q
    ||||| |||||||| | ||| ||||||||    
T  33667687 acttattgggataaggcttggttgttgtt 33667715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 12492451 - 12492384
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  12492451 aacactatggcgtcatttgatgcatgtagccgaccccacttagtgggataaggcttggttgttgttgt 12492384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 13561453 - 13561386
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  13561453 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttgtttgttgttgt 13561386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 533
Target Start/End: Original strand, 24280958 - 24281054
Alignment:
Q  435 catttcaaaatgaatgtcagtttaacaaaaatgatttgttctaaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaattgta 533  Q
    ||||||||||||||||||  ||||  |||||  | |||||  ||||| ||||||| ||||| |||| ||||||||| ||||| ||||||| ||||||||    
T  24280958 catttcaaaatgaatgtcgttttagtaaaaa--aattgtttcaaaatgaatgtcacttttagtttccaatgcaataataattttttcttttcaattgta 24281054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 533
Target Start/End: Complemental strand, 24381254 - 24381158
Alignment:
Q  435 catttcaaaatgaatgtcagtttaacaaaaatgatttgttctaaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaattgta 533  Q
    ||||||||||||||||||  ||||  |||||  | |||||  ||||| ||||||| ||||| |||| ||||||||| ||||| ||||||| ||||||||    
T  24381254 catttcaaaatgaatgtcgttttagtaaaaa--aattgtttcaaaatgaatgtcacttttagtttccaatgcaataataattttttcttttcaattgta 24381158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 29816597 - 29816664
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  29816597 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 29816664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 10082875 - 10082785
Alignment:
Q  83 aagagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgta 173  Q
    ||||||||||| ||  |||||| ||||||| | ||||||||||||| ||| | || |||  || ||||||||||||| | |||||||||||    
T  10082875 aagagaaactagtaacaaggatctagagattaatgagttggagaaagacatggtttttgttaacacactatgacgtcgtctgattcatgta 10082785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 530
Target Start/End: Complemental strand, 14162050 - 14161996
Alignment:
Q  476 taaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaatt 530  Q
    ||||||||||||||||||   |||||||||||||| ||||| ||||||| |||||    
T  14162050 taaaataaatgtcattttaggtttctaatgcaataataattttttcttttcaatt 14161996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 15369927 - 15369837
Alignment:
Q  83 aagagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgta 173  Q
    |||||||||||||| |||  || || |||||| ||||||||||| |||||  |||||| | ||||||||||||| | |||| ||| |||||    
T  15369927 aagagaaactattaagaaaaatctaaagataaatgagttggagacatacataattcttaataaaacactatgacattatttaatttatgta 15369837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 20456988 - 20457054
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttg 212  Q
    |||| |||| ||||||||||| ||||||  | |||| |||||||||||||| | |||||||||||||    
T  20456988 aacattatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttgattgttgttg 20457054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 2713096 - 2713141
Alignment:
Q  83 aagagaaactattaggaaggatatagagataagtgagttggagaaa 128  Q
    |||||||||||||| ||||||| ||||||| | |||||||||||||    
T  2713096 aagagaaactattaagaaggatctagagatgaatgagttggagaaa 2713141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 3302059 - 3302128
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgtaa 215  Q
    ||||||| | ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||||    
T  3302059 aacactacggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtaa 3302128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 3442978 - 3442873
Alignment:
Q  106 tagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgatt 205  Q
    ||||||| | ||| ||||||||| ||| | || |||| | ||||||||| |||| |||||||||||||  | |||| ||||||||| |||| | ||| ||    
T  3442978 tagagattaatgaattggagaaagacatggtttttgatagaacactatggcgtcgtttgattcatgtagccgaccccacttagtggcataaggcttggtt 3442879  T
Q  206 gttgtt 211  Q
    ||||||    
T  3442878 gttgtt 3442873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 23980181 - 23980226
Alignment:
Q  168 catgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    |||||| ||||||| ||||||||||||||| ||||||| |||||||    
T  23980181 catgtaatcaaccccacttagtgggataatatttgatttttgttgt 23980226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 408558 - 408494
Alignment:
Q  149 actatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    |||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  408558 actatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 408494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 30639372 - 30639316
Alignment:
Q  140 tgacaaaacactatgacgtcatttgattcatgtactcaaccctacttagtgggataa 196  Q
    |||||||||| | || | || |||||| |||||| ||||||||||||||||||||||    
T  30639372 tgacaaaacattgtggcatcgtttgatccatgtagtcaaccctacttagtgggataa 30639316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 31636049 - 31636005
Alignment:
Q  84 agagaaactattaggaaggatatagagataagtgagttggagaaa 128  Q
    ||||||||||| | ||||||||||||||| | |||||||||||||    
T  31636049 agagaaactatcaagaaggatatagagatcaatgagttggagaaa 31636005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 7531772 - 7531684
Alignment:
Q  85 gagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgta 173  Q
    |||||||||||||||||||| ||||||||| ||||||||||||| ||| | || |||| | |||||||||  ||| |||||||||||||    
T  7531772 gagaaactattaggaaggatctagagataaatgagttggagaaagacatggtttttgatagaacactatggtgtcgtttgattcatgta 7531684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 213
Target Start/End: Complemental strand, 39953429 - 39953264
Alignment:
Q  48 atcactagaggtaggggttgacctnnnnnnnntagaagagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaa 147  Q
    |||||||||||||||||| |||||        || |||||||||||||||||||||| ||||||||| |||||| |||||| ||| | || ||||    |    
T  39953429 atcactagaggtaggggtagacctaggaaaactaaaagagaaactattaggaaggatctagagataaatgagttagagaaaaacatggtttttgatggga 39953330  T
Q  148 cactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    |||||||  ||  |||||||||||||  | |||| ||||||||||||||   ||| ||||||||||    
T  39953329 cactatggagttgtttgattcatgtagccgaccccacttagtgggataagacttggttgttgttgt 39953264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 193
Target Start/End: Complemental strand, 30812943 - 30812836
Alignment:
Q  86 agaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaaccctact 185  Q
    ||||||| ||||||||||| ||||||||| ||||||||| ||| ||| | || |||| | |||||||||  ||| |||||||||||||  | |||| |||    
T  30812943 agaaactgttaggaaggatctagagataaatgagttggaaaaagacatggtttttgatagaacactatggtgtcgtttgattcatgtagccgaccccact 30812844  T
Q  186 tagtggga 193  Q
    ||||||||    
T  30812843 tagtggga 30812836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 84 - 213
Target Start/End: Original strand, 32043743 - 32043869
Alignment:
Q  84 agagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaacccta 183  Q
    ||||||||||| | ||||||| || |||| | ||||||||||||| ||| | || |||| | ||||||||| |  | ||||||||||||||| | ||| |    
T  32043743 agagaaactatcaagaaggatctaaagatcaatgagttggagaaagacatggtttttgatagaacactatggc--cgtttgattcatgtactgacccc-a 32043839  T
Q  184 cttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||||||| | ||||||||||||||    
T  32043840 cttagtgggataaggcttgattgttgttgt 32043869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 87 - 213
Target Start/End: Complemental strand, 38901945 - 38901819
Alignment:
Q  87 gaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaaccctactt 186  Q
    ||||||||||||||| || ||||||| | ||| ||||||||| ||| | || |||| | ||||||||| || |||||||||||||||    |||| |  |    
T  38901945 gaaactattaggaagaatctagagattaatgatttggagaaagacatggtttttgatataacactatggcggcatttgattcatgtagcggaccccatat 38901846  T
Q  187 agtgggataatgtttgattgttgttgt 213  Q
    |||||||||| | ||||||||||||||    
T  38901845 agtgggataaggcttgattgttgttgt 38901819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 36545364 - 36545431
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||||||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  36545364 aacactatgacgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 36545431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 11523790 - 11523723
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  11523790 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 11523723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 533
Target Start/End: Complemental strand, 14234373 - 14234310
Alignment:
Q  470 ttgttctaaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaattgta 533  Q
    ||||| |||||| ||||||| |||||||||||||||||||| ||||  ||| ||| ||||||||    
T  14234373 ttgttttaaaatgaatgtcacttttaatttctaatgcaataataatatttttttttcaattgta 14234310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 14742149 - 14742082
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  14742149 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 14742082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 22681483 - 22681533
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataa 196  Q
    ||||||||||| |  ||||||||||||| ||||||| ||||||||||||||    
T  22681483 aacactatgacattgtttgattcatgtaatcaaccccacttagtgggataa 22681533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 40813539 - 40813589
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataa 196  Q
    ||||||||||| ||||||||| ||||||  |||||| ||||||||||||||    
T  40813539 aacactatgacatcatttgatccatgtagccaaccccacttagtgggataa 40813589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 533
Target Start/End: Complemental strand, 5295554 - 5295498
Alignment:
Q  477 aaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaattgta 533  Q
    ||||| ||||||| ||| | |||||||||||||| ||||| ||||||| ||||||||    
T  5295554 aaaatgaatgtcactttaagtttctaatgcaataataattttttcttttcaattgta 5295498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 16035794 - 16035730
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgt 210  Q
    |||| |||||||| ||||||||||||||    |||| |||||||||||||| || ||||||||||    
T  16035794 aacattatgacgtaatttgattcatgtagctgaccccacttagtgggataaagtgtgattgttgt 16035730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 196
Target Start/End: Original strand, 16351531 - 16351642
Alignment:
Q  84 agagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaacccta 183  Q
    ||||||||||||| ||||||| ||||||| | |||||| |||||| ||| | || || | | ||||||||| | || |||||||||||||  | |||| |    
T  16351531 agagaaactattaagaaggatctagagattaatgagtt-gagaaagacatggtttttaatagaacactatggcatcgtttgattcatgtagacgacccca 16351629  T
Q  184 cttagtgggataa 196  Q
    |||||||| ||||    
T  16351630 cttagtggaataa 16351642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 44529440 - 44529508
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgta 214  Q
    ||||||||| | ||||||||| ||||||  | |||| |||||||||||||| | ||| |||||||||||    
T  44529440 aacactatggcatcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgta 44529508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 441 - 533
Target Start/End: Original strand, 32193671 - 32193763
Alignment:
Q  441 aaaatgaatgtcagtttaacaaaaatgatttgttctaaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaattgta 533  Q
    ||||||| ||||  |||| | ||||| ||||||| |||||||||||||| ||||| |||||||||||||| ||||| ||||||| ||||||||    
T  32193671 aaaatgagtgtcgttttagccaaaataatttgttttaaaataaatgtcacttttagtttctaatgcaataataattttttcttttcaattgta 32193763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 7513519 - 7513429
Alignment:
Q  83 aagagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgta 173  Q
    |||||||||| ||||||||||| ||||||| | ||||||||||||| ||| | || |||| | ||||||||| |||  |||||||||||||    
T  7513519 aagagaaacttttaggaaggatctagagatgaatgagttggagaaagacatggtttttgatagaacactatggcgttgtttgattcatgta 7513429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 38915 - 38960
Alignment:
Q  83 aagagaaactattaggaaggatatagagataagtgagttggagaaa 128  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||    
T  38915 aagagaaactattaggaaggatctagagataaatgagttggagaaa 38960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 2689851 - 2689916
Alignment:
Q  149 actatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgta 214  Q
    |||||||||| ||||||||||| || || ||| ||||||||  ||||||||||| |||||||||||    
T  2689851 actatgacgtaatttgattcatataatcgaccttacttagtatgataatgtttggttgttgttgta 2689916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 30789141 - 30789076
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgtt 211  Q
    ||||||||||||||||||||| ||||||  | | ||||||||||||||||| | ||| ||||||||    
T  30789141 aacactatgacgtcatttgatccatgtagccgatcctacttagtgggataaggcttggttgttgtt 30789076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 608379 - 608426
Alignment:
Q  149 actatgacgtcatttgattcatgtactcaaccctacttagtgggataa 196  Q
    |||||||||||||||||| ||||||  | |||||||||||||||||||    
T  608379 actatgacgtcatttgatccatgtagccgaccctacttagtgggataa 608426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 530
Target Start/End: Complemental strand, 1502893 - 1502834
Alignment:
Q  471 tgttctaaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaatt 530  Q
    |||| |||||| ||||||||||| | |||| ||||||||| ||||||||||||| |||||    
T  1502893 tgttttaaaattaatgtcattttcagtttccaatgcaatagtaattatttcttttcaatt 1502834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 31819046 - 31819113
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||||| ||| |||| |||||    
T  31819046 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataatgcttggttgtggttgt 31819113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 34143832 - 34143765
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| |||||| || |||| ||||| |||||||| | ||| ||||||||||    
T  34143832 aacactatggcgtcatttgatccatgtagtcgaccccacttattgggataaggcttggttgttgttgt 34143765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 34156448 - 34156381
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| |||||| || |||| ||||| |||||||| | ||| ||||||||||    
T  34156448 aacactatggcgtcatttgatccatgtagtcgaccccacttattgggataaggcttggttgttgttgt 34156381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 10098954 - 10098896
Alignment:
Q  155 acgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    |||||||||||| |||||| || |||| ||||||||||||||   ||||||||||||||    
T  10098954 acgtcatttgatccatgtaatcgaccccacttagtgggataagacttgattgttgttgt 10098896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 537
Target Start/End: Original strand, 32429295 - 32429349
Alignment:
Q  483 aatgtcatttttaatttctaatgcaatattaattatttctttccaattgtatcat 537  Q
    ||||||| |||||||||| ||||||||| ||| | ||||||| ||||||||||||    
T  32429295 aatgtcacttttaatttccaatgcaataataactttttcttttcaattgtatcat 32429349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 533
Target Start/End: Complemental strand, 4850683 - 4850587
Alignment:
Q  437 tttcaaaatgaatgtcagtttaacaaaaatgatttgttctaaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaattgta 533  Q
    ||||||||||| ||||  |||| ||||||  | |||||  ||||| ||||||| ||| |||||| ||||||||| ||| | ||||||| ||||||||    
T  4850683 tttcaaaatgagtgtcgctttagcaaaaaaaaattgtttcaaaatgaatgtcactttcaatttccaatgcaataataactttttcttttcaattgta 4850587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 9706985 - 9707053
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgta 214  Q
    ||||||||| | ||||||||| ||||||  | |||| |||||||||||||| | ||| |||||||||||    
T  9706985 aacactatggcatcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgta 9707053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 14031013 - 14031077
Alignment:
Q  149 actatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||| |||||||||||| ||| ||  | |||||| |||||||||||| ||||| ||||||||||    
T  14031013 actataacgtcatttgatccatataaccgaccctatttagtgggataaagtttggttgttgttgt 14031077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 34934897 - 34934829
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgta 214  Q
    ||||||||| | ||||||||| ||||||  | |||| |||||||||||||| | ||| |||||||||||    
T  34934897 aacactatggcctcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgta 34934829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 15086137 - 15086204
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||||||||||||||| ||||||  |||||| |||||||||||||| | ||| ||||||||||    
T  15086137 aacactatgacgtcatttgatccatgtagccaaccccacttagtgggataaggcttggttgttgttgt 15086204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 190
Target Start/End: Original strand, 28528510 - 28528614
Alignment:
Q  86 agaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaaccctact 185  Q
    ||||||||||| ||||||| ||||||| | ||||||||||||| ||| | || |||| | | ||||||| |||| |||||||||||||  | |||| |||    
T  28528510 agaaactattaagaaggatctagagattaatgagttggagaaagacatggtttttgatagaccactatggcgtcgtttgattcatgtagccgaccccact 28528609  T
Q  186 tagtg 190  Q
    |||||    
T  28528610 tagtg 28528614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 5113958 - 5114025
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||||||||||||||||||||||  | |||  | |||||||||||| ||||| ||||||||||    
T  5113958 aacactatgacgtcatttgattcatgtagccgacctcaattagtgggataacgtttggttgttgttgt 5114025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 49347460 - 49347390
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgtaaa 216  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| |||||||||||||    
T  49347460 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtaaa 49347390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 28533682 - 28533750
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgta 214  Q
    ||||||||||||||||||||| ||||||  | |||| ||||||||||||||   ||| |||||||||||    
T  28533682 aacactatgacgtcatttgatccatgtagccgaccccacttagtgggataagacttggttgttgttgta 28533750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 42337771 - 42337839
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgta 214  Q
    ||||||||| | ||||||||| ||||||  |||||| |||||||||||||| | ||| |||||||||||    
T  42337771 aacactatggcatcatttgatccatgtagccaaccccacttagtgggataaggcttggttgttgttgta 42337839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 43898439 - 43898491
Alignment:
Q  161 tttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    |||||||||||||  |||||| |||||||||||||||| ||| ||||||||||    
T  43898439 tttgattcatgtagccaaccccacttagtgggataatgcttggttgttgttgt 43898491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 1210960 - 1211027
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  1210960 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 1211027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 3777327 - 3777260
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||||||||||||||| ||||||  | | || ||||||| |||||||| ||| ||||||||||    
T  3777327 aacactatgacgtcatttgatccatgtagccgatcccacttagtaggataatgcttggttgttgttgt 3777260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 22090311 - 22090378
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||||||||||||||| ||||||  | |||| ||| |||||||||| | ||| ||||||||||    
T  22090311 aacactatgacgtcatttgatccatgtagccgaccccactaagtgggataaggcttggttgttgttgt 22090378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 25979298 - 25979231
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  25979298 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 25979231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 29577467 - 29577534
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  29577467 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 29577534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 30202197 - 30202130
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  30202197 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 30202130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 173
Target Start/End: Original strand, 40419794 - 40419880
Alignment:
Q  86 agaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgta 173  Q
    ||||||||||| ||||||| ||||||||| ||||||||||||| ||| | || |||| | | ||||||| |||| ||| |||||||||    
T  40419794 agaaactattatgaaggatctagagataaatgagttggagaaagacatggtttttgatagatcactatggcgtcgttt-attcatgta 40419880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 6641283 - 6641393
Alignment:
Q  103 atatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttg 202  Q
    |||||||||||| |||||| ||||||  || |||| | || ||||||||||| |||| |||||||||||||  | || | ||||| ||| |||| | ||     
T  6641283 atatagagataaatgagtttgagaaaggcatgattttcgataaaacactatggcgtcgtttgattcatgtaagcgacgccacttaatggaataaagctta 6641382  T
Q  203 attgttgttgt 213  Q
    |||||||||||    
T  6641383 attgttgttgt 6641393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 533
Target Start/End: Original strand, 9915439 - 9915504
Alignment:
Q  468 atttgttctaaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaattgta 533  Q
    ||||||| |||||| ||||||||||| | |||| ||||||||| ||| | ||||||| ||||||||    
T  9915439 atttgttttaaaatgaatgtcattttcagtttccaatgcaataataaatttttcttttcaattgta 9915504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 15577570 - 15577611
Alignment:
Q  83 aagagaaactattaggaaggatatagagataagtgagttgga 124  Q
    |||||||||||||| ||||||||||||||| | |||||||||    
T  15577570 aagagaaactattaagaaggatatagagattaatgagttgga 15577611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 26016589 - 26016634
Alignment:
Q  83 aagagaaactattaggaaggatatagagataagtgagttggagaaa 128  Q
    |||||||||||||||||| ||| ||||||||| |||||| ||||||    
T  26016589 aagagaaactattaggaatgatctagagataaatgagttagagaaa 26016634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 40568474 - 40568409
Alignment:
Q  149 actatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgta 214  Q
    |||||| ||| ||||||| ||||||  |||||| |||||||||||||| | ||| |||||||||||    
T  40568474 actatggcgtaatttgatccatgtagccaaccccacttagtgggataaggcttggttgttgttgta 40568409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 51602281 - 51602338
Alignment:
Q  156 cgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||||| ||||||  |||||| |||||||||||||| | ||| ||||||||||    
T  51602281 cgtcatttgatccatgtagccaaccccacttagtgggataaggcttggttgttgttgt 51602338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 39140730 - 39140794
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgt 210  Q
    |||| |||| ||| ||||||||||||||  | |||| |||||||||||||||| ||| |||||||    
T  39140730 aacattatggcgtaatttgattcatgtagccgaccccacttagtgggataatgcttggttgttgt 39140794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 39797216 - 39797280
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgt 210  Q
    |||| |||| |||||||||||||||||| ||||  | ||||||||| |||| | |||||||||||    
T  39797216 aacattatggcgtcatttgattcatgtaatcaattccacttagtggaataaggcttgattgttgt 39797280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 43028875 - 43028807
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgta 214  Q
    |||||||||  ||| |||||||||||||  | |||| |||||||||||||| | ||| |||||||||||    
T  43028875 aacactatggtgtcgtttgattcatgtaagcgaccccacttagtgggataaggcttggttgttgttgta 43028807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 52921295 - 52921363
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgta 214  Q
    ||||||||  ||||||||||| ||||||  | |||| |||||||||||||| | ||| |||||||||||    
T  52921295 aacactattgcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgta 52921363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 437 - 534
Target Start/End: Complemental strand, 47823636 - 47823539
Alignment:
Q  437 tttcaaaatgaatgtcagtttaacaaaaatgatttgttctaaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaattgtat 534  Q
    ||||||||| ||||||| |||||  |||   | ||||| |||||||||||||||||||| ||| |||||||||| ||||| |||||||  ||||||||    
T  47823636 tttcaaaataaatgtcactttaatcaaacaaaattgttttaaaataaatgtcatttttagtttttaatgcaataataattttttctttttaattgtat 47823539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 2133679 - 2133612
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||| ||||||| ||||||||| |||| |||||||||||||| | ||| ||||||||||    
T  2133679 aacactatggcgtgatttgatccatgtactcgaccccacttagtgggataaggcttggttgttgttgt 2133612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 47555399 - 47555332
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  |||||| |||||||||||||| | ||| ||||||||||    
T  47555399 aacactatggcgtcatttgatccatgtagccaaccccacttagtgggataaggcttggttgttgttgt 47555332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 213
Target Start/End: Complemental strand, 31454351 - 31454225
Alignment:
Q  87 gaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaaccctactt 186  Q
    ||||||||||   ||||| |||| || | ||| ||||||||| ||| | || |||| | ||||||||| ||||||||||||||| ||  | |||| ||||    
T  31454351 gaaactattaattaggatctagatattaatgaattggagaaagacatggtttttgatagaacactatggcgtcatttgattcatttagccgaccccactt 31454252  T
Q  187 agtgggataatgtttgattgttgttgt 213  Q
    |||||||||| | ||| ||||||||||    
T  31454251 agtgggataaggcttggttgttgttgt 31454225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 468 - 533
Target Start/End: Original strand, 11393541 - 11393606
Alignment:
Q  468 atttgttctaaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaattgta 533  Q
    ||||||| |||||| ||||||||||| |||||| ||||||||| ||| | ||||||| ||||||||    
T  11393541 atttgttttaaaatgaatgtcattttcaatttccaatgcaataataactttttcttttcaattgta 11393606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 83 - 196
Target Start/End: Original strand, 27893241 - 27893354
Alignment:
Q  83 aagagaaactattaggaaggatatagagataagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaaccct 182  Q
    ||||||||||||||  |||||  ||||||| | ||||||||||||| ||| |||| |||| | ||||||||| | |  |||||||||||||  | | ||     
T  27893241 aagagaaactattaaaaaggacctagagattaatgagttggagaaagacatgatttttgaaagaacactatggcattgtttgattcatgtagccgatccc 27893340  T
Q  183 acttagtgggataa 196  Q
    ||||||||||||||    
T  27893341 acttagtgggataa 27893354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 45834665 - 45834600
Alignment:
Q  148 cactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||| ||||||||||| ||||||  |||||| |||||||||||||| | ||| ||||||||||    
T  45834665 cactatggcgtcatttgatccatgtagccaaccccacttagtgggataaggcttggttgttgttgt 45834600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 529
Target Start/End: Original strand, 42939938 - 42940026
Alignment:
Q  441 aaaatgaatgtcagtttaacaaaaatgatttgttctaaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaat 529  Q
    ||||||| ||||  |||||||||||| |||||||  ||||| ||||||||||| | |||  |||||| ||||||||| || ||||||||    
T  42939938 aaaatgagtgtcgctttaacaaaaataatttgtttcaaaatgaatgtcattttcatttttcaatgcactattaattacttttttccaat 42940026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 47233663 - 47233595
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgta 214  Q
    ||||||||| ||||||||||||||||||  | |||| | |||||||||||| | ||| |||||||||||    
T  47233663 aacactatggcgtcatttgattcatgtagccgaccccagttagtgggataaggcttggttgttgttgta 47233595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 533
Target Start/End: Complemental strand, 53200865 - 53200769
Alignment:
Q  437 tttcaaaatgaatgtcagtttaacaaaaatgatttgttctaaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaattgta 533  Q
    ||||||||||||||||  |||| ||||||  | ||||| |||||| ||||||| ||||| |||  ||||||||| ||| | ||||||| ||||||||    
T  53200865 tttcaaaatgaatgtcgttttagcaaaaaaaaattgttttaaaatgaatgtcacttttagttttcaatgcaataataactttttcttttcaattgta 53200769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 311376 - 311309
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  311376 aacactatggcgtcatttgatacatgtagccgaccccacttagtgggataaggcttggttgttgttgt 311309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 5169047 - 5169114
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  5169047 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 5169114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 12096772 - 12096705
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  12096772 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 12096705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 40273272 - 40273205
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| ||||||||||| || ||||| ||||||||||    
T  40273272 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggaaaaggtttggttgttgttgt 40273205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 533
Target Start/End: Original strand, 41850344 - 41850451
Alignment:
Q  426 tactctccacatttcaaaatgaatgtcagtttaacaaaaatgatttgttctaaaataaatgtcatttttaatttctaatgcaatattaattatttctttc 525  Q
    |||||||  ||||| ||||||||||||| |||| | ||||  | ||||| |||||| |||| || ||||| |||| ||||||||| ||| | |||||||     
T  41850344 tactctctccattttaaaatgaatgtcattttagccaaaaataattgttttaaaatgaatgacacttttagtttccaatgcaataataactttttctttt 41850443  T
Q  526 caattgta 533  Q
    ||||||||    
T  41850444 caattgta 41850451  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 52139015 - 52139082
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||||||| ||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  52139015 aacactatgacgttatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 52139082  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 53519795 - 53519862
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||||||||||||||| ||||||  | |||| |||||||| ||||| | ||| ||||||||||    
T  53519795 aacactatgacgtcatttgatccatgtagccgaccccacttagtgagataaggcttggttgttgttgt 53519862  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 37598237 - 37598171
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccct-acttagtgggataatgtttgattgttgtt 211  Q
    |||| |||| |||||||||| ||||||| |||||||| | |||||||||||| | ||||||||||||    
T  37598237 aacattatggcgtcatttgactcatgtagtcaaccctcatttagtgggataaagcttgattgttgtt 37598171  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 514
Target Start/End: Complemental strand, 54403443 - 54403372
Alignment:
Q  441 aaaatgaatgtcagtttaacaaaaatgatttgttctaaaataaatgtcatttttaatttctaatgcaatattaa 514  Q
    |||||||| |||| ||||||||||||||| | ||  ||||| ||||||||||||| |||| |||||||| ||||    
T  54403443 aaaatgaacgtcactttaacaaaaatgatatttt--aaaatgaatgtcatttttagtttcaaatgcaatgttaa 54403372  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 3987516 - 3987616
Alignment:
Q  113 aagtgagttggagaaatacacgattcttgacaaaacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttg 212  Q
    |||||||||||||||| ||| | || |||| |  |||||||| |||  |||||||||||||| | |||| |||| |||||||||   ||| |||||||||    
T  3987516 aagtgagttggagaaagacatggtttttgataggacactatggcgttgtttgattcatgtacccgaccccactttgtgggataagacttggttgttgttg 3987615  T
Q  213 t 213  Q
    |    
T  3987616 t 3987616  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 25191592 - 25191659
Alignment:
Q  146 aacactatgacgtcatttgattcatgta-ctcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| |||||| || | ||| |||||||||||||||| ||| ||||||||||    
T  25191592 aacactatggcgtcatttgatccatgtagctgatccc-acttagtgggataatgcttggttgttgttgt 25191659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 31566228 - 31566160
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgta 214  Q
    |||||||||  |||||||||| ||||||  | |||| |||||||||||||| | ||| |||||||||||    
T  31566228 aacactatggtgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgta 31566160  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 533
Target Start/End: Complemental strand, 50088501 - 50088405
Alignment:
Q  437 tttcaaaatgaatgtcagtttaacaaaaatgatttgttctaaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaattgta 533  Q
    ||||||||||| ||||  |||| ||||||  | ||||| |||||| || |||| ||||| |||| ||||||||| ||| | ||||||| ||||||||    
T  50088501 tttcaaaatgagtgtcgttttagcaaaaaaaaattgttttaaaatgaacgtcacttttagtttccaatgcaatagtaactttttcttttcaattgta 50088405  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 533
Target Start/End: Complemental strand, 50646291 - 50646199
Alignment:
Q  441 aaaatgaatgtcagtttaacaaaaatgatttgttctaaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaattgta 533  Q
    ||||||| ||||  |||||||||||  | |||||  ||||||||||||| ||| | |||| ||||||||| ||| | ||||||| ||||||||    
T  50646291 aaaatgagtgtcgttttaacaaaaaaaaattgtttcaaaataaatgtcactttcagtttccaatgcaataataactttttcttttcaattgta 50646199  T

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Target: scaffold1318 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 546 - 613
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||||||||||||||    
T  546 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttgattgttgttgt 613  T

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Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 437 - 533
Target Start/End: Original strand, 4105 - 4202
Alignment:
Q  437 tttcaaaatgaatgtcagtttaacaaaaatgatttgttctaaaataaatgtcattttt-aatttctaatgcaatattaattatttctttccaattgta 533  Q
    ||||||||||||||||  |||||| ||||  || | || |||||| |||||||||||| |||||  ||||||||| ||||| ||||||| ||||||||    
T  4105 tttcaaaatgaatgtcgttttaaccaaaaaaatatattttaaaatgaatgtcatttttcaattttcaatgcaataataattttttcttttcaattgta 4202  T

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Target: scaffold0168 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 28956 - 28889
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||| ||||||||||| ||||||  | |||| |||||||||||||| | ||| ||||||||||    
T  28956 aacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 28889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 13657 - 13690
Alignment:
Q  180 cctacttagtgggataatgtttgattgttgttgt 213  Q
    ||||||||||||||||||||||| ||||||||||    
T  13657 cctacttagtgggataatgtttggttgttgttgt 13690  T

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Target: scaffold0565 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 533
Target Start/End: Complemental strand, 9829 - 9733
Alignment:
Q  437 tttcaaaatgaatgtcagtttaacaaaaatgatttgttctaaaataaatgtcatttttaatttctaatgcaatattaattatttctttccaattgta 533  Q
    ||||||||||| ||||  |||| | ||||  | ||||| |||||| ||||||||||| | |||| ||||||||| ||| | ||||||| ||||||||    
T  9829 tttcaaaatgactgtcgttttagccaaaaaaaattgttttaaaatgaatgtcattttcagtttccaatgcaataataactttttcttttcaattgta 9733  T

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Target: scaffold0113 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 11613 - 11549
Alignment:
Q  149 actatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgt 213  Q
    |||||||||||||||||| ||||||  | |||| ||||||| |||||| ||||| ||| ||||||    
T  11613 actatgacgtcatttgatccatgtagccgaccccacttagtaggataaggtttggttgctgttgt 11549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 82933 - 83001
Alignment:
Q  146 aacactatgacgtcatttgattcatgtactcaaccctacttagtgggataatgtttgattgttgttgta 214  Q
    ||||||||||||||||||||| ||||||  | |||| ||||| ||| |||| | ||| |||||||||||    
T  82933 aacactatgacgtcatttgatccatgtagccgaccccacttaatggaataaggcttggttgttgttgta 83001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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