View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4875_high_2 (Length: 475)
Name: NF4875_high_2
Description: NF4875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4875_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 38816646 - 38816178
Alignment:
| Q |
1 |
atattcgtgaatcgtgatagtgttggagactgacatctgttggacactggacacacctttaatatgaagtctcggtgctagatatttatgggagatattt |
100 |
Q |
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| T |
38816646 |
atattcgtgaatcgtgatagtgttggagactgacatctgttggacactgcacacacctttaatatgaagtctcggtgctagatatttatgggagatattt |
38816547 |
T |
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| Q |
101 |
atttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaag |
200 |
Q |
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| T |
38816546 |
atttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaag |
38816447 |
T |
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| Q |
201 |
gaggaatgcttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttttacattttgtctagattttgc |
300 |
Q |
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| T |
38816446 |
gaggaatgcttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttttacattttgtctagattttgc |
38816347 |
T |
|
| Q |
301 |
agttggctactttttgtggttacagttggtatacatcacggccttatgtaaattaaactgactttgtctgttagagaagggtatatagttgtatgaggtt |
400 |
Q |
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| T |
38816346 |
agttggctactttttgtggttacagttggtatacatcacggccttatgtaaattaaactgactttgtctgttagagaagggtatatagttgtatgaggtt |
38816247 |
T |
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| Q |
401 |
tctttgggtaggtgagaaattgaggttcaaaggatacaatataccttttcttgcattttctttcactga |
469 |
Q |
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| T |
38816246 |
tctttgggtaggtgagaaattgaggttcaaaggatacaatataccttttcttgcattttctttcactga |
38816178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 130 - 279
Target Start/End: Complemental strand, 38821928 - 38821782
Alignment:
| Q |
130 |
tgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaaggga |
229 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||| |||| | ||||| |||||||| |||||||||| |||||||||||||||||||||| |
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| T |
38821928 |
tgttgtgtgtccaggtgaagatttgagcgatcttgctgtggactattcggtgtgcccatctaaagaagaaggaggaaggcttgggtgggtgagaaaggga |
38821829 |
T |
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| Q |
230 |
caaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttt |
279 |
Q |
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| T |
38821828 |
caaatggta---tgatgtttagatttgcttaaatcttgttcttagggttt |
38821782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 35665597 - 35665559
Alignment:
| Q |
21 |
tgttggagactgacatctgttggacactggacacacctt |
59 |
Q |
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| T |
35665597 |
tgttggaaactgacatgtgttggacactggacacacctt |
35665559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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