View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4875_high_4 (Length: 335)

Name: NF4875_high_4
Description: NF4875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4875_high_4
NF4875_high_4
[»] chr7 (4 HSPs)
chr7 (203-335)||(11504703-11504835)
chr7 (4-139)||(11504504-11504639)
chr7 (11-139)||(18939771-18939894)
chr7 (12-77)||(40964697-40964762)
[»] chr1 (2 HSPs)
chr1 (5-139)||(41326607-41326741)
chr1 (223-335)||(41326423-41326532)
[»] chr6 (7 HSPs)
chr6 (5-139)||(20909713-20909846)
chr6 (5-139)||(20924161-20924294)
chr6 (223-335)||(20909525-20909637)
chr6 (223-335)||(20923973-20924085)
chr6 (4-135)||(27445147-27445278)
chr6 (204-328)||(27445339-27445463)
chr6 (6-135)||(22081843-22081972)
[»] chr8 (3 HSPs)
chr8 (223-335)||(42312639-42312751)
chr8 (5-139)||(42312827-42312961)
chr8 (4-97)||(43227215-43227307)
[»] scaffold0003 (4 HSPs)
scaffold0003 (4-135)||(42080-42211)
scaffold0003 (204-328)||(35225-35349)
scaffold0003 (204-328)||(41895-42019)
scaffold0003 (4-135)||(35410-35540)
[»] chr4 (2 HSPs)
chr4 (6-135)||(37618000-37618129)
chr4 (59-97)||(30180300-30180338)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 203 - 335
Target Start/End: Original strand, 11504703 - 11504835
Alignment:
Q  203 agttaaatctgcaatatgtttttgatgattctaaaacattatgtttactcctatgcacaataagaatttcaccaattgaatttggtagataattatcaac 302  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11504703 agttaaatctgcaatctgtttttgatgattctaaaacattatgtttactcctatgcacaataagaatttcaccaattgaatttggtagataattatcaac 11504802  T
Q  303 taactcatgtagtttttcatttaaaagggaaat 335  Q
    |||||||||||||||||||||||||||||||||    
T  11504803 taactcatgtagtttttcatttaaaagggaaat 11504835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 11504504 - 11504639
Alignment:
Q  4 gagtttggtgttctatgttaaaaaattttaaaatcactaccatatgatgaagcaagagttttagaatcaagtgttgtttgacatgaagatatctttgtaa 103  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11504504 gagtttggtgttctatgttaaaaaaatttaaaaccactaccatatgatgaagcaagagttttagaatcaagtgttgtttgacatgaagatatctttgtaa 11504603  T
Q  104 tcgaagacgtctcacttgatgccactgcgtttattg 139  Q
    ||||||||||||||||||||||||||||||||||||    
T  11504604 tcgaagacgtctcacttgatgccactgcgtttattg 11504639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 18939894 - 18939771
Alignment:
Q  11 gtgttctatgttaaaaaattttaaaatcactaccatatgatgaagcaagagttttagaatcaagtgttgtttgacatgaagatatctttgtaatcgaaga 110  Q
    ||||||||||||||||||    |||| ||||| ||||||||||| ||||||||||||||||||||||||||||  | |||||||||||| | ||||||||    
T  18939894 gtgttctatgttaaaaaa----aaaaacactaacatatgatgaatcaagagttttagaatcaagtgttgtttggaaggaagatatctttat-atcgaaga 18939800  T
Q  111 cgtctcacttgatgccactgcgtttattg 139  Q
    ||||| | ||||||| |||| ||||||||    
T  18939799 cgtcttaattgatgcaactgtgtttattg 18939771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 40964697 - 40964762
Alignment:
Q  12 tgttctatgttaaaaaattttaaaatcactaccatatgatgaagcaagagttttagaatcaagtgt 77  Q
    |||| |||||||||| | |||||||   |||||||| ||||||||| |||||||||||||||||||    
T  40964697 tgttttatgttaaaagaatttaaaacatctaccataggatgaagcatgagttttagaatcaagtgt 40964762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 41326741 - 41326607
Alignment:
Q  5 agtttggtgttctatgttaaaaaattttaaaatcactaccatatgatgaagcaagagttttagaatcaagtgttgtttgacatgaagatatctttgtaat 104  Q
    ||||||||||||||||||| ||||   | ||| |||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||| ||| ||||||    
T  41326741 agtttggtgttctatgttagaaaaaaattaaaccactgccatatgatgaagcaagagttttagaatcaagttttgttcgacaggaagatctctctgtaat 41326642  T
Q  105 cgaagacgtctcacttgatgccactgcgtttattg 139  Q
    ||||||||||| |||||||||||||| ||||||||    
T  41326641 cgaagacgtcttacttgatgccactgtgtttattg 41326607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 223 - 335
Target Start/End: Complemental strand, 41326532 - 41326423
Alignment:
Q  223 tttgatgattctaaaacattatgtttactcctatgcacaataagaatttcaccaattgaatttggtagataattatcaactaactcatgtagtttttcat 322  Q
    ||||||||||| ||||||| ||   | ||||||||||||||||||||||| | ||||||||||| |||||||||||||| |||||||||||||||| |||    
T  41326532 tttgatgattccaaaacatcat---tgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaactcatgtagttttgcat 41326436  T
Q  323 ttaaaagggaaat 335  Q
    ||||||| |||||    
T  41326435 ttaaaagagaaat 41326423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 20909846 - 20909713
Alignment:
Q  5 agtttggtgttctatgttaaaaaattttaaaatcactaccatatgatgaagcaagagttttagaatcaagtgttgtttgacatgaagatatctttgtaat 104  Q
    |||||||||||||| |||| ||||  |||||  |||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| ||||||    
T  20909846 agtttggtgttctaagttagaaaaaattaaac-cactgccatatgatgaagcaagagttttagaatcaagtgttgttcgacaggaagatctctctgtaat 20909748  T
Q  105 cgaagacgtctcacttgatgccactgcgtttattg 139  Q
     |||||||||| |||||||||||||| ||||||||    
T  20909747 agaagacgtcttacttgatgccactgtgtttattg 20909713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 20924294 - 20924161
Alignment:
Q  5 agtttggtgttctatgttaaaaaattttaaaatcactaccatatgatgaagcaagagttttagaatcaagtgttgtttgacatgaagatatctttgtaat 104  Q
    |||||||||||||| |||| ||||  |||||  |||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| ||||||    
T  20924294 agtttggtgttctaagttagaaaaaattaaac-cactgccatatgatgaagcaagagttttagaatcaagtgttgttcgacaggaagatctctctgtaat 20924196  T
Q  105 cgaagacgtctcacttgatgccactgcgtttattg 139  Q
     |||||||||| |||||||||||||| ||||||||    
T  20924195 agaagacgtcttacttgatgccactgtgtttattg 20924161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 223 - 335
Target Start/End: Complemental strand, 20909637 - 20909525
Alignment:
Q  223 tttgatgattctaaaacattatgtttactcctatgcacaataagaatttcaccaattgaatttggtagataattatcaactaactcatgtagtttttcat 322  Q
    ||||||||||| ||||||| || ||| ||||||||||||||||||||||| | ||||||||||| |||||||||||||| |||||||||||||||| |||    
T  20909637 tttgatgattccaaaacatcatatttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaactcatgtagttttgcat 20909538  T
Q  323 ttaaaagggaaat 335  Q
    ||||||| |||||    
T  20909537 ttaaaagagaaat 20909525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 223 - 335
Target Start/End: Complemental strand, 20924085 - 20923973
Alignment:
Q  223 tttgatgattctaaaacattatgtttactcctatgcacaataagaatttcaccaattgaatttggtagataattatcaactaactcatgtagtttttcat 322  Q
    ||||||||||| ||||||| || ||| ||||||||||||||||||||||| | ||||||||||| |||||||||||||| |||||||||||||||| |||    
T  20924085 tttgatgattccaaaacatcatatttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaactcatgtagttttgcat 20923986  T
Q  323 ttaaaagggaaat 335  Q
    ||||||| |||||    
T  20923985 ttaaaagagaaat 20923973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 27445147 - 27445278
Alignment:
Q  4 gagtttggtgttctatgttaaaaaattttaaaatcactaccatatgatgaagcaagagttttagaatcaagtgttgtttgacatgaagatatctttgtaa 103  Q
    |||||||||||||||||||||||||  |||||| |||||||||| |||||||||| |||||||||||||| ||||| |||||| |||||||| ||| |      
T  27445147 gagtttggtgttctatgttaaaaaaaattaaaaccactaccataggatgaagcaatagttttagaatcaaatgttgattgacaggaagatatatttattg 27445246  T
Q  104 tcgaagacgtctcacttgatgccactgcgttt 135  Q
    ||||||| |||| ||||| |||| ||| ||||    
T  27445247 tcgaagatgtctaacttgctgcccctgtgttt 27445278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 204 - 328
Target Start/End: Original strand, 27445339 - 27445463
Alignment:
Q  204 gttaaatctgcaatatgtttttgatgattctaaaacattatgtttactcctatgcacaataagaatttcaccaattgaatttggtagataattatcaact 303  Q
    |||||||||||||| | | ||||| ||||| |||| || |||||| |||||||||||||||||||||   | ||||||||||| ||||||||||||||||    
T  27445339 gttaaatctgcaatttttgtttgaggattccaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttgctagataattatcaact 27445438  T
Q  304 aactcatgtagtttttcatttaaaa 328  Q
    | ||||||||||| | |||||||||    
T  27445439 agctcatgtagttctgcatttaaaa 27445463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 22081843 - 22081972
Alignment:
Q  6 gtttggtgttctatgttaaaaaattttaaaatcactaccatatgatgaagcaagagttttagaatcaagtgttgtttgacatgaagatatctttgtaatc 105  Q
    ||||||||||||||||| |||||  | |||| ||||  |||| ||||||| | |||||||||||||||| |||||||||||||||| |||||||||| ||    
T  22081843 gtttggtgttctatgtttaaaaaaatcaaaaccacttacataggatgaagtaggagttttagaatcaagcgttgtttgacatgaagttatctttgtagtc 22081942  T
Q  106 gaagacgtctcacttgatgccactgcgttt 135  Q
     ||| || || |||||||||||||| ||||    
T  22081943 aaagtcgacttacttgatgccactgtgttt 22081972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 223 - 335
Target Start/End: Complemental strand, 42312751 - 42312639
Alignment:
Q  223 tttgatgattctaaaacattatgtttactcctatgcacaataagaatttcaccaattgaatttggtagataattatcaactaactcatgtagtttttcat 322  Q
    ||||||||||| ||||||| | |||| ||||||||||||||||||||||| | ||||||||||| |||||||||||||| |||||||||||||||| |||    
T  42312751 tttgatgattccaaaacatcacgtttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaactcatgtagttttgcat 42312652  T
Q  323 ttaaaagggaaat 335  Q
    ||||||| |||||    
T  42312651 ttaaaagagaaat 42312639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 42312961 - 42312827
Alignment:
Q  5 agtttggtgttctatgttaaaaaattttaaaatcactaccatatgatgaagcaagagttttagaatcaagtgttgtttgacatgaagatatctttgtaat 104  Q
    ||||||||||||||||||| ||||   | ||| |||| ||||| |||||||||||||| |||||||||||||||||| |||| |||||| ||| ||||||    
T  42312961 agtttggtgttctatgttagaaaaaaattaaaccactgccatacgatgaagcaagagtattagaatcaagtgttgttcgacaggaagatctctctgtaat 42312862  T
Q  105 cgaagacgtctcacttgatgccactgcgtttattg 139  Q
    ||||||||||| |||||||||||||| ||| ||||    
T  42312861 cgaagacgtcttacttgatgccactgtgttcattg 42312827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 43227215 - 43227307
Alignment:
Q  4 gagtttggtgttctatgttaaaaaattttaaaatcactaccatatgatgaagcaagagttttagaatcaagtgttgtttgacatgaagatatct 97  Q
    ||||||||||||||||||||||||| || ||| | ||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  43227215 gagtttggtgttctatgttaaaaaaattaaaact-actaccataggatgaagcaagagttttagaatcaagtgttctttgacaggaagatatct 43227307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 42211 - 42080
Alignment:
Q  4 gagtttggtgttctatgttaaaaaattttaaaatcactaccatatgatgaagcaagagttttagaatcaagtgttgtttgacatgaagatatctttgtaa 103  Q
    |||||||||||||||||||||||||  |||||| |||||||||| |||||||||| |||||||||||||| ||||| |||||| |||||||| ||| |      
T  42211 gagtttggtgttctatgttaaaaaaaattaaaaccactaccataggatgaagcaatagttttagaatcaaatgttgattgacaggaagatatatttattg 42112  T
Q  104 tcgaagacgtctcacttgatgccactgcgttt 135  Q
    ||||||| |||| ||||| |||| ||| ||||    
T  42111 tcgaagatgtctaacttgctgcccctgtgttt 42080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 204 - 328
Target Start/End: Complemental strand, 35349 - 35225
Alignment:
Q  204 gttaaatctgcaatatgtttttgatgattctaaaacattatgtttactcctatgcacaataagaatttcaccaattgaatttggtagataattatcaact 303  Q
    |||||||||||||| | | ||||| ||||| |||| || |||||| |||||||||||||||||||||   | ||||||||||| ||||||||||||||||    
T  35349 gttaaatctgcaatttctgtttgaggattccaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttgctagataattatcaact 35250  T
Q  304 aactcatgtagtttttcatttaaaa 328  Q
    |||||||||| || | |||||||||    
T  35249 aactcatgtatttctgcatttaaaa 35225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 204 - 328
Target Start/End: Complemental strand, 42019 - 41895
Alignment:
Q  204 gttaaatctgcaatatgtttttgatgattctaaaacattatgtttactcctatgcacaataagaatttcaccaattgaatttggtagataattatcaact 303  Q
    |||||||||||||| | | ||||| ||||| |||| || |||||| |||||||||||||||||||||   | ||||||||||| ||||||||||||||||    
T  42019 gttaaatctgcaatttttgtttgaggattccaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttgctagataattatcaact 41920  T
Q  304 aactcatgtagtttttcatttaaaa 328  Q
    | ||||||||||| | |||||||||    
T  41919 agctcatgtagttctgcatttaaaa 41895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 35540 - 35410
Alignment:
Q  4 gagtttggtgttctatgttaaaaaattttaaaatcactaccatatgatgaagcaagagttttagaatcaagtgttgtttgacatgaagatatctttgtaa 103  Q
    ||||||||||||||||||||||||| || |||| |||||||||| |||||||||| |||||||||||||| ||||| |||||| |||||||| ||| |      
T  35540 gagtttggtgttctatgttaaaaaaatt-aaaaccactaccataggatgaagcaatagttttagaatcaaatgttgattgacaggaagatatatttattg 35442  T
Q  104 tcgaagacgtctcacttgatgccactgcgttt 135  Q
    ||||||| |||| ||||| |||| ||| ||||    
T  35441 tcgaagatgtctaacttgctgcccctgtgttt 35410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 135
Target Start/End: Complemental strand, 37618129 - 37618000
Alignment:
Q  6 gtttggtgttctatgttaaaaaattttaaaatcactaccatatgatgaagcaagagttttagaatcaagtgttgtttgacatgaagatatctttgtaatc 105  Q
    ||||||||||||||||| |||||  | |||| ||||  |||| ||||||| | |||||||||||||||| |||||||||||||||| |||||||||| ||    
T  37618129 gtttggtgttctatgtttaaaaaaatcaaaaccacttacataggatgaagaaggagttttagaatcaagcgttgtttgacatgaagttatctttgtagtc 37618030  T
Q  106 gaagacgtctcacttgatgccactgcgttt 135  Q
     ||| || || |||||||||||||| ||||    
T  37618029 aaagtcgacttacttgatgccactgtgttt 37618000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 30180300 - 30180338
Alignment:
Q  59 gagttttagaatcaagtgttgtttgacatgaagatatct 97  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  30180300 gagttttagaatcaattgttgtttgacaagaagatatct 30180338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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