View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4876-Insertion-12 (Length: 565)

Name: NF4876-Insertion-12
Description: NF4876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4876-Insertion-12
NF4876-Insertion-12
[»] chr2 (3 HSPs)
chr2 (8-365)||(4395176-4395530)
chr2 (459-558)||(13922186-13922285)
chr2 (461-549)||(11828960-11829048)
[»] chr7 (11 HSPs)
chr7 (463-564)||(2286463-2286564)
chr7 (459-558)||(496684-496783)
chr7 (459-558)||(11765708-11765807)
chr7 (462-552)||(7527269-7527359)
chr7 (459-564)||(25185926-25186031)
chr7 (465-564)||(23844642-23844741)
chr7 (459-559)||(31427258-31427360)
chr7 (459-558)||(48057698-48057797)
chr7 (459-558)||(42535213-42535312)
chr7 (470-552)||(40855156-40855239)
chr7 (459-520)||(4649474-4649535)
[»] chr6 (1 HSPs)
chr6 (463-564)||(33594512-33594613)
[»] chr4 (3 HSPs)
chr4 (459-564)||(52055141-52055246)
chr4 (459-564)||(1158248-1158353)
chr4 (478-558)||(49866670-49866750)
[»] chr3 (6 HSPs)
chr3 (463-564)||(47940831-47940932)
chr3 (462-558)||(49786397-49786493)
chr3 (459-558)||(8436895-8436994)
chr3 (459-558)||(29836769-29836867)
chr3 (468-558)||(8152989-8153079)
chr3 (464-559)||(48778971-48779066)
[»] chr5 (5 HSPs)
chr5 (459-564)||(25955953-25956058)
chr5 (459-558)||(38280272-38280371)
chr5 (459-564)||(42250117-42250222)
chr5 (459-558)||(1501368-1501467)
chr5 (483-564)||(7886380-7886461)
[»] chr1 (5 HSPs)
chr1 (459-558)||(51787273-51787372)
chr1 (459-558)||(20186840-20186939)
chr1 (459-558)||(30339637-30339736)
chr1 (459-561)||(43740403-43740505)
chr1 (483-546)||(9672981-9673043)
[»] chr8 (2 HSPs)
chr8 (454-564)||(4076937-4077047)
chr8 (463-564)||(3780352-3780453)


Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 8 - 365
Target Start/End: Original strand, 4395176 - 4395530
Alignment:
Q  8 attatgtcattgtactattgtgtttgctattagggttattattcaatagaggtttatagaagaacactgctcatgagaatgacttcagatatctgtgctg 107  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4395176 attatgtcaatgtactattgtgtttgctattagggttattattcaatagaggtttatagaagaacactgctcatgagaatgacttcagatatctgtgctg 4395275  T
Q  108 ttctaaagtatggatatcatcatcatcatgactttgttgacttaaatatgtaacttttatttgctcttctatcggtttgaagaactatgtttgtttattt 207  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4395276 ttctaaagtatggatatca---tcatcatgactttgttgacttaaatatgtaacttttatttgctcttctatcggtttgaagaactatgtttgtttattt 4395372  T
Q  208 atagtataataactatattatgaaattatatgatgtggaattattagctatggatgtgtttctatcactaattttgctattccaaaaagattattatgaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4395373 atagtataataactatattatgaaattatatgatgtggaattattagctatggatgtgtttctatcactaattttgctattccaaaaagattattatgaa 4395472  T
Q  308 atttgattaaagtatcatgtatttttgatttggatnnnnnnntgttatggagatgaac 365  Q
    |||||||||||||||||||||||||| ||||||||       ||||||||||||||||    
T  4395473 atttgattaaagtatcatgtatttttaatttggataaaaaaatgttatggagatgaac 4395530  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 459 - 558
Target Start/End: Original strand, 13922186 - 13922285
Alignment:
Q  459 agtggtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttc 558  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||  ||| |||||||| |||| |||||||||||||||||||||||| |||||    
T  13922186 agtggtgatacatgtacatccataggtggcatacacacttaaacctccacgtaaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttc 13922285  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 461 - 549
Target Start/End: Original strand, 11828960 - 11829048
Alignment:
Q  461 tggtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttg 549  Q
    |||||| | |||||||  ||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  11828960 tggtgagacatgcacactcataggtggcatacacacttaaacctccacataaatatgtgacatgtgtcctagaccccacaaacactttg 11829048  T

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Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 463 - 564
Target Start/End: Original strand, 2286463 - 2286564
Alignment:
Q  463 gtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttccttt 562  Q
    |||||| ||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||| |||||||||    
T  2286463 gtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctcttccttt 2286562  T
Q  563 tc 564  Q
    ||    
T  2286563 tc 2286564  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 459 - 558
Target Start/End: Original strand, 496684 - 496783
Alignment:
Q  459 agtggtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttc 558  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||| ||| || ||||| |||| |||||||||||||||||||||||| |||||    
T  496684 agtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatatgacacgtgtcctagaccccacaaacactttgtctctcttc 496783  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 459 - 558
Target Start/End: Original strand, 11765708 - 11765807
Alignment:
Q  459 agtggtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttc 558  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||| ||| |||||||| |||| || ||||||||||||||||||||| |||||    
T  11765708 agtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtccttgaccccacaaacactttgtctctcttc 11765807  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 462 - 552
Target Start/End: Complemental strand, 7527359 - 7527269
Alignment:
Q  462 ggtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtct 552  Q
    ||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||  |||||| ||| |||||||||||||    
T  7527359 ggtgatacatgcatattcattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagactccataaacactttgtct 7527269  T

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Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 459 - 564
Target Start/End: Complemental strand, 25186031 - 25185926
Alignment:
Q  459 agtggtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttc 558  Q
    |||||||||  |||||||  ||| |||| |||||||||||||||||||||||||| ||||||||||||  |||||||||||||| ||||| ||| |||||    
T  25186031 agtggtgatgcatgcacactcataggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaatactttatctctcttc 25185932  T
Q  559 cttttc 564  Q
    ||||||    
T  25185931 cttttc 25185926  T

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Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 465 - 564
Target Start/End: Original strand, 23844642 - 23844741
Alignment:
Q  465 gatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttccttttc 564  Q
    |||| |||||||||||| |||  |||||||||| ||| ||||||| ||| ||||||||||||  ||||||| |||||||||||||||| |||||||||||    
T  23844642 gatacatgcacatccataggtaacatacacactcaaatctccacataaacatgtgacatgtgccctagacctcacaaacactttgtctctcttccttttc 23844741  T

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Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 459 - 559
Target Start/End: Complemental strand, 31427360 - 31427258
Alignment:
Q  459 agtggtgatatatgcacatccattggtg--gcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatct 556  Q
    |||||||||| |||||||||||| ||||  ||||||| | |||||||||| || |||||||||||||||| | ||||| ||||||||||||||||| |||    
T  31427360 agtggtgatacatgcacatccataggtgtggcatacataattaaacctccgcataaatatgtgacatgtggtttagactccacaaacactttgtctctct 31427261  T
Q  557 tcc 559  Q
    |||    
T  31427260 tcc 31427258  T

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Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 459 - 558
Target Start/End: Complemental strand, 48057797 - 48057698
Alignment:
Q  459 agtggtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttc 558  Q
    |||||||||| ||| ||| |||| ||||||||||| | |||||| |||||| ||| |||||||| |||| |||||||||||||||||||||||| |||||    
T  48057797 agtggtgatacatgtacacccataggtggcatacatatttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttc 48057698  T

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Target: chr7; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 459 - 558
Target Start/End: Complemental strand, 42535312 - 42535213
Alignment:
Q  459 agtggtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttc 558  Q
    |||| ||||||||| |||  ||| |||| |||||||||||||||||||||| ||| |||||||| ||||  || | |||||||||||||||||| |||||    
T  42535312 agtgatgatatatgtacactcataggtgacatacacacttaaacctccacataaacatgtgacacgtgtcttatatcccacaaacactttgtctctcttc 42535213  T

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Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 470 - 552
Target Start/End: Complemental strand, 40855239 - 40855156
Alignment:
Q  470 atgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgt-gttctagaccccacaaacactttgtct 552  Q
    ||||| ||||||  |||| ||| ||||||||||||| ||||||| ||||||| ||| | |||||||| ||||||||||||||||    
T  40855239 atgcatatccatatgtggtatatacacttaaacctctacacaaacatgtgacctgtgggtctagacctcacaaacactttgtct 40855156  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 520
Target Start/End: Complemental strand, 4649535 - 4649474
Alignment:
Q  459 agtggtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtga 520  Q
    |||||||||| ||||| || |||  |||||||||||| ||||| ||||||| ||||||||||    
T  4649535 agtggtgatagatgcaaattcataagtggcatacacatttaaaactccacataaatatgtga 4649474  T

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Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 463 - 564
Target Start/End: Complemental strand, 33594613 - 33594512
Alignment:
Q  463 gtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttccttt 562  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||  |||||||||||||| ||||||||| |||||||||    
T  33594613 gtgatacatgcacatccattggtggcatacacacttaaaccttcacacaaacatgtgacatgtggcctagaccccacaaatactttgtctctcttccttt 33594514  T
Q  563 tc 564  Q
    ||    
T  33594513 tc 33594512  T

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Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 459 - 564
Target Start/End: Complemental strand, 52055246 - 52055141
Alignment:
Q  459 agtggtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttc 558  Q
    |||||||||| |||||||| ||| ||||||||||||||||||||||| ||||||| ||||||||||||  |||||||||||||||||||||||| |||||    
T  52055246 agtggtgatacatgcacattcataggtggcatacacacttaaacctctacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctcttc 52055147  T
Q  559 cttttc 564  Q
    ||||||    
T  52055146 cttttc 52055141  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 459 - 564
Target Start/End: Complemental strand, 1158353 - 1158248
Alignment:
Q  459 agtggtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttc 558  Q
    |||| ||||| ||||||||| || |  ||| |||||||||||||||||||||||| ||||||||||||  |||||||| ||||||| ||||||| |||||    
T  1158353 agtgatgatacatgcacatcgatagaaggcgtacacacttaaacctccacacaaacatgtgacatgtggcctagaccctacaaacattttgtctctcttc 1158254  T
Q  559 cttttc 564  Q
    | ||||    
T  1158253 cctttc 1158248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 478 - 558
Target Start/End: Original strand, 49866670 - 49866750
Alignment:
Q  478 ccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttc 558  Q
    |||| ||||| |||||| ||||||||| |||||||||||||||||||||   |||||| || ||||||||||||| |||||    
T  49866670 ccataggtggtatacacgcttaaaccttcacacaaatatgtgacatgtgacttagaccacataaacactttgtctctcttc 49866750  T

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Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 463 - 564
Target Start/End: Original strand, 47940831 - 47940932
Alignment:
Q  463 gtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttccttt 562  Q
    |||||| ||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||| |||||||||    
T  47940831 gtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctcttccttt 47940930  T
Q  563 tc 564  Q
    ||    
T  47940931 tc 47940932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 462 - 558
Target Start/End: Original strand, 49786397 - 49786493
Alignment:
Q  462 ggtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttc 558  Q
    ||||||| ||| ||| |||| ||||||||||||||||||||||||||| ||| |||||||| |||| |||||||||||||||||||||||| |||||    
T  49786397 ggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttc 49786493  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 459 - 558
Target Start/End: Complemental strand, 8436994 - 8436895
Alignment:
Q  459 agtggtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttc 558  Q
    |||||||||||||| ||| |||| ||||||||||||| ||||||||| ||| |||||| ||||| ||||  ||||||||||||||||||||||| |||||    
T  8436994 agtggtgatatatgtacacccataggtggcatacacatttaaacctctacataaatatatgacacgtgtcttagaccccacaaacactttgtctctcttc 8436895  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 459 - 558
Target Start/End: Complemental strand, 29836867 - 29836769
Alignment:
Q  459 agtggtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttc 558  Q
    |||||||||| |||||||  ||| |||||||||||||||||||||||||||||||||||| |||| ||  ||| |||||||||| ||||||||| |||||    
T  29836867 agtggtgatacatgcacactcataggtggcatacacacttaaacctccacacaaatatgtaacatatgacctacaccccacaaa-actttgtctctcttc 29836769  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 468 - 558
Target Start/End: Original strand, 8152989 - 8153079
Alignment:
Q  468 atatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttc 558  Q
    ||||||||| | || |||||||||||||| |||||||||||| ||| ||||||||||||  |||||| ||||||||||||||||| |||||    
T  8152989 atatgcacacctataggtggcatacacacctaaacctccacataaacatgtgacatgtggcctagactccacaaacactttgtctctcttc 8153079  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 464 - 559
Target Start/End: Complemental strand, 48779066 - 48778971
Alignment:
Q  464 tgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttcc 559  Q
    ||||| ||||||| | || |||||||||| || |||||| |||||| |||||||||||||||| ||||||| ||| ||||||||| ||| ||||||    
T  48779066 tgatacatgcacacctataggtggcatactcatttaaacatccacataaatatgtgacatgtggtctagactccataaacactttatctctcttcc 48778971  T

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Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 459 - 564
Target Start/End: Complemental strand, 25956058 - 25955953
Alignment:
Q  459 agtggtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttc 558  Q
    |||||||||| |||||||  ||| ||||||||||||| ||||||||||||||||| ||||||||||||  |||||||||||||||||||||||| |||||    
T  25956058 agtggtgatacatgcacactcataggtggcatacacatttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctcttc 25955959  T
Q  559 cttttc 564  Q
    ||||||    
T  25955958 cttttc 25955953  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 459 - 558
Target Start/End: Complemental strand, 38280371 - 38280272
Alignment:
Q  459 agtggtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttc 558  Q
    |||||||||| ||| |||||||| ||||| ||||||||||||||||||||| ||| |||||||| |||| |||||||||||||||||||||||| |||||    
T  38280371 agtggtgatacatgtacatccataggtggtatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttc 38280272  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 459 - 564
Target Start/End: Original strand, 42250117 - 42250222
Alignment:
Q  459 agtggtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttc 558  Q
    |||||||||| ||||||| ||||   || |||| ||||||||||||||||||||| ||||||||||||   ||||||||||||||||||||||| |||||    
T  42250117 agtggtgatacatgcacacccataaatgacatagacacttaaacctccacacaaacatgtgacatgtggcttagaccccacaaacactttgtctctcttc 42250216  T
Q  559 cttttc 564  Q
    ||||||    
T  42250217 cttttc 42250222  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 459 - 558
Target Start/End: Complemental strand, 1501467 - 1501368
Alignment:
Q  459 agtggtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttc 558  Q
    |||||||||| ||||| |||||| |||| |||||||||||||||||||||| ||| || ||||||||   |||||||||| | ||||||||||| |||||    
T  1501467 agtggtgatacatgcagatccataggtgacatacacacttaaacctccacataaacatatgacatgtagcctagaccccatatacactttgtctctcttc 1501368  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 483 - 564
Target Start/End: Original strand, 7886380 - 7886461
Alignment:
Q  483 ggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttccttttc 564  Q
    |||| |||||||||||||||||||||||||| ||||||||||||  ||| | |||||| | | ||||||| |||||| ||||    
T  7886380 ggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctaaatcccacatatattttgtctctcttccctttc 7886461  T

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Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 459 - 558
Target Start/End: Original strand, 51787273 - 51787372
Alignment:
Q  459 agtggtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttc 558  Q
    |||||||||| ||| |||||||| |||||||||||||||||||||| |||| ||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  51787273 agtggtgatacatgtacatccataggtggcatacacacttaaaccttcacataaacatgtgacacgtgctctagaccccacaaacactttgtctctcttc 51787372  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 459 - 558
Target Start/End: Complemental strand, 20186939 - 20186840
Alignment:
Q  459 agtggtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttc 558  Q
    |||||||||| ||| ||| |||| ||||||||||||||||||||||||||| ||| |||||||| |||| ||||| |||||||||||||||||| |||||    
T  20186939 agtggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagatcccacaaacactttgtctctcttc 20186840  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 459 - 558
Target Start/End: Original strand, 30339637 - 30339736
Alignment:
Q  459 agtggtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttc 558  Q
    |||||||||| ||| ||| |||| ||||||||||||||||||||||| ||| ||| |||||||| |||| |||||||||||||||||||||||| |||||    
T  30339637 agtggtgatacatgtacacccataggtggcatacacacttaaacctctacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttc 30339736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 459 - 561
Target Start/End: Complemental strand, 43740505 - 43740403
Alignment:
Q  459 agtggtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttc 558  Q
    |||||||||  ||| |||||||| | |  ||| |||||||||||||||||||||| |||||| |||||  ||| ||| |||||||||||||||| |||||    
T  43740505 agtggtgatccatgaacatccatagatcacatgcacacttaaacctccacacaaacatgtgatatgtggcctaaacctcacaaacactttgtctctcttc 43740406  T
Q  559 ctt 561  Q
    |||    
T  43740405 ctt 43740403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 483 - 546
Target Start/End: Complemental strand, 9673043 - 9672981
Alignment:
Q  483 ggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacact 546  Q
    ||||||||||||||||||||||||||| ||| |||||||| |||| |||||  |||||||||||    
T  9673043 ggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctaga-tccacaaacact 9672981  T

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Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 454 - 564
Target Start/End: Complemental strand, 4077047 - 4076937
Alignment:
Q  454 aaaccagtggtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtcta 553  Q
    |||| |||| ||||| ||||| | |||| ||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||| |||||||     
T  4077047 aaacgagtgatgatacatgcatacccataggtggcatacacacttaaacctccacacaaacatgtgacatgtagcctagaccccacaaacaatttgtctc 4076948  T
Q  554 tcttccttttc 564  Q
    |||||||||||    
T  4076947 tcttccttttc 4076937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 463 - 564
Target Start/End: Complemental strand, 3780453 - 3780352
Alignment:
Q  463 gtgatatatgcacatccattggtggcatacacacttaaacctccacacaaatatgtgacatgtgttctagaccccacaaacactttgtctatcttccttt 562  Q
    |||||| ||| |||||||| ||||||||||||||| ||||||||||||||| |||||||||||   ||| |||| | ||||||||||||| |||||| ||    
T  3780453 gtgatacatgtacatccataggtggcatacacactcaaacctccacacaaacatgtgacatgtagcctaaacccgagaaacactttgtctctcttccctt 3780354  T
Q  563 tc 564  Q
    ||    
T  3780353 tc 3780352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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