View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4876-Insertion-16 (Length: 116)

Name: NF4876-Insertion-16
Description: NF4876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4876-Insertion-16
NF4876-Insertion-16
[»] chr3 (4 HSPs)
chr3 (8-116)||(1718635-1718743)
chr3 (8-116)||(1739973-1740081)
chr3 (8-114)||(1750346-1750452)
chr3 (8-114)||(1755410-1755516)
[»] chr8 (1 HSPs)
chr8 (24-79)||(38088542-38088597)


Alignment Details
Target: chr3 (Bit Score: 97; Significance: 4e-48; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 4e-48
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 1718635 - 1718743
Alignment:
Q  8 ccaccatccaacaggtattctcactgcatctaatccattttgtgacataaatctgaaatcatcttcagttatgtatgaattccgatgctcctgaaaagca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||    
T  1718635 ccaccatccaacaggtattctcactgcatctaatccattttgtgacataaatctgaaatcatcttcagttatgtacgaattccaatgctcctgcaaagca 1718734  T
Q  108 aacaaagtt 116  Q
    |||||||||    
T  1718735 aacaaagtt 1718743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 4e-48
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 1739973 - 1740081
Alignment:
Q  8 ccaccatccaacaggtattctcactgcatctaatccattttgtgacataaatctgaaatcatcttcagttatgtatgaattccgatgctcctgaaaagca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||    
T  1739973 ccaccatccaacaggtattctcactgcatctaatccattttgtgacataaatctgaaatcatcttcagttatgtataaattccaatgctcctgcaaagca 1740072  T
Q  108 aacaaagtt 116  Q
    |||||||||    
T  1740073 aacaaagtt 1740081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 6e-47
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 1750346 - 1750452
Alignment:
Q  8 ccaccatccaacaggtattctcactgcatctaatccattttgtgacataaatctgaaatcatcttcagttatgtatgaattccgatgctcctgaaaagca 107  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  1750346 ccaccatccaacaggtattctgactgcatctaatccattttgtgacataaatctgaaatcatcttcagttatgtatgaattccaatgctcctgcaaagca 1750445  T
Q  108 aacaaag 114  Q
    |||||||    
T  1750446 aacaaag 1750452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 1755410 - 1755516
Alignment:
Q  8 ccaccatccaacaggtattctcactgcatctaatccattttgtgacataaatctgaaatcatcttcagttatgtatgaattccgatgctcctgaaaagca 107  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| ||||||| ||| ||||| ||||||    
T  1755410 ccaccatccaacaggtattctcactgcatttaatccattttgtgacatgaatgtgaaatcatcttcagttatgtaagaattccaatggtcctgcaaagca 1755509  T
Q  108 aacaaag 114  Q
    |||||||    
T  1755510 aacaaag 1755516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 38088542 - 38088597
Alignment:
Q  24 attctcactgcatctaatccattttgtgacataaatctgaaatcatcttcagttat 79  Q
    ||||| ||||||| ||| ||||||| |||||| ||||||||||| ||||| |||||    
T  38088542 attctgactgcatttaacccattttctgacatgaatctgaaatcttcttctgttat 38088597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University