View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4876-Insertion-18 (Length: 298)
Name: NF4876-Insertion-18
Description: NF4876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4876-Insertion-18 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 298
Target Start/End: Complemental strand, 30167983 - 30167711
Alignment:
| Q |
8 |
aggttgtctccatgggatggggtcgagctgcagaaggagaggagtatgatcggaaattggagcaacgagggaaattggagcaacgagagtctgaaaggca |
107 |
Q |
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| T |
30167983 |
aggttgtctccatgggatggggtcgagctgcagaaggagaggagtatgatcggaaattgg------------------agcaacgagagtctgaaaggca |
30167902 |
T |
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| Q |
108 |
gcattaggaaacatgctttgccacgagtttgaaacaagagctctgtctagacgggcttccttggatgcttcagtaccgatacttttgaaccaagtgaatt |
207 |
Q |
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| T |
30167901 |
gcattaggaaacatgctttgccacgagtttgaaacaagagctctgtctagacgggcttccttggatgcttcagtaccgatacttttgaaccaagtgaatt |
30167802 |
T |
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| Q |
208 |
gatatcccaacagcggcatatccaattctaagttataaatgtattgtttctcttatagtggcccaacttcattcttcacactcttttcagt |
298 |
Q |
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| T |
30167801 |
gatatcccaacagcggcatatccaattctaagttataaatgtattgtttctcttatagtggcccaacttcattcttcacattcttttcagt |
30167711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 229
Target Start/End: Original strand, 12354085 - 12354236
Alignment:
| Q |
78 |
gaaattggagcaacgagagtctgaaaggcagcattaggaaacatgctttgccacgagtttgaaacaagagctctgtctagacgggcttccttggatgctt |
177 |
Q |
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| T |
12354085 |
gaaattggagcaacaagagtctgaagtgctgcatttggaaacatgttttgccatgagggtgtgacaagggctcgatctaagcgcgcttccttagatgcat |
12354184 |
T |
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| Q |
178 |
cagtaccgatacttttgaaccaagtgaattgatatcccaacagcggcatatc |
229 |
Q |
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| T |
12354185 |
tagtaccaacactcttaaaccatgtaaattggtatcccaacagcggcatatc |
12354236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 78 - 229
Target Start/End: Complemental strand, 23148001 - 23147850
Alignment:
| Q |
78 |
gaaattggagcaacgagagtctgaaaggcagcattaggaaacatgctttgccacgagtttgaaacaagagctctgtctagacgggcttccttggatgctt |
177 |
Q |
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|||||||||||||| |||||||||| || ||||| ||||||||| ||||||| ||| || ||||| ||||| |||| ||| |||||||| ||||| | |
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| T |
23148001 |
gaaattggagcaacaagagtctgaagtgctgcattcggaaacatgttttgccatgagggtgtgacaagggctctatctaaacgcgcttccttagatgcat |
23147902 |
T |
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| Q |
178 |
cagtaccgatacttttgaaccaagtgaattgatatcccaacagcggcatatc |
229 |
Q |
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| T |
23147901 |
cagtaccaacactcttaaaccatgtaaactggtatcccaacagcggcatatc |
23147850 |
T |
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