View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4876-Insertion-2 (Length: 1130)
Name: NF4876-Insertion-2
Description: NF4876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4876-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 507; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 7 - 629
Target Start/End: Complemental strand, 593572 - 592956
Alignment:
| Q |
7 |
aaaaaggaccaacacagacttcatcattgtcttgaataaggtgagcattcgactgcttgctaaatccaatatttgttctttataagttactcagttttgt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
593572 |
aaaaaggaccaacacagacttcatcattgtcttgaataaggtgagcattcgactgcttgcaaaatccaatatttgttctttataagttactcagttttgt |
593473 |
T |
|
| Q |
107 |
cacactgttgtcgcaacattgtaggtggataggatttgtgcctggcaaacatgtcgcaatgctccaattcgtgaagcattgatgcagcagtatgcgagta |
206 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
593472 |
cacactgttgttgcaacattgtaggtggataggatttgtgcctggcaaacatgtcgcaatgctccaattcgtgaagcattgatgcagcagtatgcgagtg |
593373 |
T |
|
| Q |
207 |
ctaaatatgagtttcgtaggagggttgttaaggtagtaaaa-agcatttt-tcttcctaagttgtggcagatagtttttgttcatgttcgccgtgctaat |
304 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||| | || |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
593372 |
ctaaatatgagtttcgtaggagggtcgttaaggtagtaaaattttattttatttttctaagttgtggcagatagtttttgttcatgttcgccgtgctaat |
593273 |
T |
|
| Q |
305 |
ttttcttgttttacttgtagattgtttctcagttcagaatgcttggcgtaaatgctcaattgtattatgaaaacaatacaatgggagaaacattcagcat |
404 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
593272 |
ttttcttgttttacttctagattgtttctcagttcaggatgcttggcgtaaatgctcaattgtattatgaaaacaatacaatgggagaaacattcagcat |
593173 |
T |
|
| Q |
405 |
tgtgccgacaagtgcagtaaggtaacaaggtaacagtctttcttgtagccacaactctctttcactgtccctattatgagaaatcannnnnnnggggttg |
504 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
593172 |
tgtgccgacaagtgc--------aataaggtaacagtctttcttgtagccacaactctctttcactgtccctattatgagaaatcatttttttggggttg |
593081 |
T |
|
| Q |
505 |
gtaaatggcacaatagctggttttggaccaccattttccgttgggtctttccaattctttgtggttaaagttgccatgaaatcatgttattcttggatat |
604 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
593080 |
gtaaatggcacaatagctggttttggacccccattttccgttgggtctttccaattctttgtggttaaagttgccatgaaatcatgttattcttggatat |
592981 |
T |
|
| Q |
605 |
agttaatgtctcttttgtcattgag |
629 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
592980 |
agttaatgtctcttttgtcattgag |
592956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 698 - 983
Target Start/End: Complemental strand, 592935 - 592648
Alignment:
| Q |
698 |
cgagtcatagttttgacacctattcactggtcttgtccctgcatccacttagaatttgtttggtttaatatgaggggaggggctaattaacttttgttgc |
797 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
592935 |
cgagtcatagttttcaaacctattcactggtcttgttcctgcatccacttagaatttgtttggtttaatatgaggggaggggctaattaacttttgttgc |
592836 |
T |
|
| Q |
798 |
ttttacatcattttggtacacttttaggcccaccattaatgataaggccattagttatgtacgggagaaatatctgaatgggacaaatgg-aaagagtgg |
896 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
592835 |
ttttacatcattttggtacacttttaggcccaccattaatgataaggccattagttatgtacgggagaaatatctgaatgggacaaatggaaaagagtgg |
592736 |
T |
|
| Q |
897 |
tagagaagattctaatctagaatcaagagag-agagggggaaagtcataaggagagtgggtaatcaaaatgcacgaaagggactagta |
983 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
592735 |
tagagaagattctaatctagaatcaagagagaagagggggaaagtcataaggagagtgggtaatcaaaatgcacgaaaggaactagta |
592648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 71 - 471
Target Start/End: Original strand, 182626 - 183029
Alignment:
| Q |
71 |
tccaatatttgttctttataagttactcagttttgtcacactgttgtcgcaacattgtaggtggataggatttgtgcctggcaaacatgtcgcaatgctc |
170 |
Q |
| |
|
||||||||||||||||| | |||| |||||||||||||| ||| | ||||||||| ||||||| |||||||||||||||||||||||||| ||||||| |
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|
| T |
182626 |
tccaatatttgttctttc-aggttattcagttttgtcacatggttcttgcaacattgcaggtggacaggatttgtgcctggcaaacatgtcgtaatgctc |
182724 |
T |
|
| Q |
171 |
caattcgtgaagcattgatgcagcagtatgcgagtactaaatatgagtttcgtaggagggttgttaaggtagtaaaaagcattttt-----cttcctaag |
265 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||| |||||||||||||| | ||||| ||| ||||| |
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|
| T |
182725 |
caattcgtgaagcattgatgcaacagtatgggagtgctaaatacgagtttcgtaggagggtcattaaggtagtaaaagacgtttttttttcctttctaag |
182824 |
T |
|
| Q |
266 |
ttgtggcagatagtttttgttcatgttcgccgtgctaatttttcttgttttacttgtagattgtttctcagttcagaatgcttggcgtaaatgctcaatt |
365 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| ||||||||||| | |||||||| |||||| ||||||||||||| ||||| || |||||| ||||||| |
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|
| T |
182825 |
ttgtggcagattgtttttgttcatgtttgccatgctaatttttttccttttacttctagattatttctcagttcaggatgctcggtgtaaatactcaatt |
182924 |
T |
|
| Q |
366 |
gtattatgaaaacaatacaatgggagaaacattcagcattgtgccgacaagtgcagtaaggtaacaaggtaacagtctttcttgtagccacaactctctt |
465 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||| || | |||||||||||||||||||| ||||| |
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| T |
182925 |
gtattatgaaaacaaaacaatgggagaaacattcaacattgtgccgacaagtgcaataaggtaactgtgt-attgtctttcttgtagccacaacactctt |
183023 |
T |
|
| Q |
466 |
tcactg |
471 |
Q |
| |
|
|||||| |
|
|
| T |
183024 |
tcactg |
183029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 254 - 430
Target Start/End: Complemental strand, 29219944 - 29219766
Alignment:
| Q |
254 |
tttcttcctaagttgtggcagatagtttttgttcatgttcgccgtgctaatttttcttgttttacttgtagattgtttctcagttcagaatgcttggcgt |
353 |
Q |
| |
|
|||||| ||||| |||||||||| ||||||||| ||||||||| |||||||||| | ||||||| |||||| || |||| |||| | | || | |
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|
| T |
29219944 |
tttctttctaagctgtggcagattgtttttgttaatgttcgcc----taatttttctcggtttacttctagattattgctcaattcaagagtcaggggct |
29219849 |
T |
|
| Q |
354 |
aaatgctcaattgtattatgaaaa------caatacaatgggagaaacattcagcattgtgccgacaagtgcagtaaggtaac |
430 |
Q |
| |
|
|||| || ||||||||||| |||| ||| ||||||||||||||||||| ||||||||| ||||||||| ||||||||| |
|
|
| T |
29219848 |
aaatactgaattgtattataaaaataaaaacaaaacaatgggagaaacattcaacattgtgccaacaagtgcaataaggtaac |
29219766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 29220104 - 29220009
Alignment:
| Q |
101 |
ttttgtcacactgttgtcgcaacattgtaggtggataggatttgtgcctggcaaacatgtcgcaatgctccaattcgtgaagcattgatgcagcag |
196 |
Q |
| |
|
||||||||||||||| | ||||| ||| ||||||||| |||| | |||| ||||||||| |||||||||||| || ||||| ||||||||||| |
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|
| T |
29220104 |
ttttgtcacactgttcttgcaactttgcaggtggatatgattcctcgctggaaaacatgtcctaatgctccaatttgtaaagcagtgatgcagcag |
29220009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 2e-27; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 262 - 429
Target Start/End: Original strand, 44605348 - 44605515
Alignment:
| Q |
262 |
taagttgtggcagatagtttttgttcatgttcgccgtgctaatttttcttgttttacttgtagattgtttctcagttcagaatgcttggcgtaaatgctc |
361 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||| | || ||||| || |
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|
| T |
44605348 |
taagttgtggtagattgtttttgttaatgtttgccatgctaatttttcttgttttacttctagattgttactcagttcaaggaacaagggctaaatactg |
44605447 |
T |
|
| Q |
362 |
aattgtattatgaaaacaatacaatgggagaaacattcagcattgtgccgacaagtgcagtaaggtaa |
429 |
Q |
| |
|
| ||||||||| |||| || ||||||||||||||||||||||||||| ||||||||| |||||||| |
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|
| T |
44605448 |
agttgtattataaaaataaagaaatgggagaaacattcagcattgtgcctacaagtgcaataaggtaa |
44605515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 81 - 197
Target Start/End: Original strand, 44605162 - 44605278
Alignment:
| Q |
81 |
gttctttataagttactcagttttgtcacactgttgtcgcaacattgtaggtggataggatttgtgcctggcaaacatgtcgcaatgctccaattcgtga |
180 |
Q |
| |
|
|||||||||| ||| |||| ||||||||||||||| | |||||||||||||| || ||| ||| || |||| |||||||||||||||||||||||||| | |
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|
| T |
44605162 |
gttctttataggttcctcaattttgtcacactgttcttgcaacattgtaggttgacaggctttatggctggaaaacatgtcgcaatgctccaattcgtaa |
44605261 |
T |
|
| Q |
181 |
agcattgatgcagcagt |
197 |
Q |
| |
|
|||| ||| |||||||| |
|
|
| T |
44605262 |
agcaatgaagcagcagt |
44605278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 544 - 629
Target Start/End: Original strand, 44605627 - 44605714
Alignment:
| Q |
544 |
gttgggtctttccaattcttt--gtggttaaagttgccatgaaatcatgttattcttggatatagttaatgtctcttttgtcattgag |
629 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| || ||||||| |||||| ||||| |
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|
| T |
44605627 |
gttgcgtctttccaattctttatgtggttaaagttgccatggaatcatgttattcttggatataattgatgtctcctttgtctttgag |
44605714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 430
Target Start/End: Original strand, 44627134 - 44627283
Alignment:
| Q |
281 |
tttgttcatgttcgccgtgctaatttttcttgttttacttgtagattgtttctcagttcagaatgcttggcgtaaatgctcaattgtattatgaaaacaa |
380 |
Q |
| |
|
|||||| |||||| || |||||||||||||||||| |||| ||||| ||| | ||||||| | || ||||| || |||||||||| ||||||| |
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|
| T |
44627134 |
tttgttaatgttcaccatgctaatttttcttgtttcacttctagatcgttacccagttcaaggaacaagggctaaatactgaattgtattacaaaaacaa |
44627233 |
T |
|
| Q |
381 |
tacaatgggagaaacattcagcattgtgccgacaagtgcagtaaggtaac |
430 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
44627234 |
agaaatgggcgaaacattcagcattgtgcctacaagtgcaataaggtaac |
44627283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 44626961 - 44627049
Alignment:
| Q |
109 |
cactgttgtcgcaacattgtaggtggataggatttgtgcctggcaaacatgtcgcaatgctccaattcgtgaagcattgatgcagcagt |
197 |
Q |
| |
|
||||||| | ||||||||| |||| || ||| ||| || |||| |||||||||||||||||||||||||| ||||| ||| |||||||| |
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|
| T |
44626961 |
cactgttcttgcaacattgcaggttgacaggctttatggctggaaaacatgtcgcaatgctccaattcgtaaagcaatgacgcagcagt |
44627049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 40672422 - 40672373
Alignment:
| Q |
148 |
ctggcaaacatgtcgcaatgctccaattcgtgaagcattgatgcagcagt |
197 |
Q |
| |
|
|||| ||||||||| |||||||||| ||||| |||||||||||||||||| |
|
|
| T |
40672422 |
ctggaaaacatgtcccaatgctccatttcgtaaagcattgatgcagcagt |
40672373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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