View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4876-Insertion-3 (Length: 1100)
Name: NF4876-Insertion-3
Description: NF4876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4876-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 785; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 785; E-Value: 0
Query Start/End: Original strand, 7 - 1036
Target Start/End: Complemental strand, 37789775 - 37788748
Alignment:
| Q |
7 |
aaaaggttgatatttgatgaccaaatattaatttctgctcctttgtagaatgtcaacaccatcgccccactaatccccattaatgttcctatcactttag |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37789775 |
aaaaggttgatatttgatgaccaaatattaatttctgctcctttgtagaatgtcaacaccatcgccccactaatccccattaatgttcctatcactttag |
37789676 |
T |
|
| Q |
107 |
cctttccttctactacactccaatttagtttttccaatctatgtatggaa---caaaagcatataatagagtaactaatagtgtaaaataactgagaata |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||| |
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| T |
37789675 |
cctttccttctactacactccaatttagtttttccaatctatgtatggaaaatcaaaagcatataatagagtaactaata----------actgataata |
37789586 |
T |
|
| Q |
204 |
taggaaacaagataaaatgcagcaagtgtgtagtgagtacccgaagaatattgccatgatgaaggtaatgcctggagtaaggttgaacattgcgaacata |
303 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37789585 |
taggaaacaagataaaatgcagcaagtgtgtagtgagtacccgaagaatattgccatgatgaaggtaatgcctggagtaaggttgaacatagcgaacata |
37789486 |
T |
|
| Q |
304 |
aatgttgatgaggttaaagtcatgccttcggcaa-catattcataaataaacttcccctgaaataatacatgacaaattaagagtgaaaatacattctag |
402 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37789485 |
aatgttgatgaggttaaagtcatgccttcggcaaacatattcataaataaacttcccctggaataatacatgacaaattaagagtgaaaatacattctag |
37789386 |
T |
|
| Q |
403 |
tcgatgaaaaaatggggttcactttgatcccttggaaaagaaa-----gctccgttgtttttatctaagcagaacgcacaattattaatctctaagaaaa |
497 |
Q |
| |
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| T |
37789385 |
tcgatgaaaata--gggttcactttgatcccttaaaaaagaaattaaagctaggttgtttttatctaagcagaacgcacaattattaatctctaagaaaa |
37789288 |
T |
|
| Q |
498 |
ataaaccggattactttaatgacgaattgaaccttcatctaaacattaaaaaacatggattttatctagtttgtcactccaccattccaccattttagat |
597 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37789287 |
ataaaccggattactttaatgacgaattgaaccttcatctaaacattaaaaaacatggattttatctagtttgtcactccaccattccaccattttagat |
37789188 |
T |
|
| Q |
598 |
gcatgacatgtcactcaattaaggaacaacatgctcgttgacaatacttgcaaattaaagaaaaacatttaggtctttgttgctcatttaaattcctaga |
697 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37789187 |
gcatgacatgtcattcaattaaggaacaacatgctcgttgacaatacttgcaaattaaagaaaaacatttaggtctttgttgctcatttaaattcctaga |
37789088 |
T |
|
| Q |
698 |
tagtggttgcttcttatatgaaggaaggatcttatacagctgttgttgttggttccttcatatgtaaaacatat----cgatgaatgaaaagttgaagaa |
793 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
37789087 |
tagtggttgcttcttatatgaaggaaggatcttatacagctgttgttgttggttccttcatatgtaaaacatatcgatcgatgcatgaaaagttgaagaa |
37788988 |
T |
|
| Q |
794 |
tagttgcatacccaaacaatccgcatagaaatgctagagaaagcacattccgagtaatctttggtctttccttcctgcataacagaaag-nnnnnnnnca |
892 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37788987 |
tagttgcatacccaaacaatccgcatagaaatgccagagaaagcacattccgagtaatctttggtctttccttcctgcataacagaaagaaaaaaaaacg |
37788888 |
T |
|
| Q |
893 |
aatttgggcctagttaatctactgcacgatctcatgttctttttaagaaccggtaaaaacatctcccgaattgtaagacatta-tcaaagcggtccatcc |
991 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
37788887 |
aattt-ggcctagttaatctactgcacgatctcatgttatttttaagaaccggtaaaaacatctcccga--------acattattcaaagcggtccatct |
37788797 |
T |
|
| Q |
992 |
gatcatgt--gtaaagattagaattcat--actaaacatgtcacatttt |
1036 |
Q |
| |
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|||||||| ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
37788796 |
gatcatgttgttaaagattagaattcattaactaaacatgtcacatttt |
37788748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 6 - 149
Target Start/End: Complemental strand, 37800622 - 37800479
Alignment:
| Q |
6 |
caaaaggttgatatttgatgaccaaatattaatttctgctcctttgtagaatgtcaacaccatcgccccactaatccccattaatgttcctatcacttta |
105 |
Q |
| |
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||||||||| ||||||||||| | |||||| ||||||||||| ||||| ||||||| || |||||| |||||||| || ||| |||||| ||||||||| |
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| T |
37800622 |
caaaaggttaatatttgatgaacgaatattgatttctgctccattgtaaaatgtcatcagcatcgcaccactaattccaattgctgttcccatcacttta |
37800523 |
T |
|
| Q |
106 |
gcctttccttctactacactccaatttagtttttccaatctatg |
149 |
Q |
| |
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| T |
37800522 |
gcctttccttctgctagactccaattcaatttttccaatctatg |
37800479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 235 - 376
Target Start/End: Complemental strand, 37798361 - 37798219
Alignment:
| Q |
235 |
agtgagtacccgaagaatattgccatgatgaaggtaatgcctggagtaaggttgaacattgcgaacataaatgttgatgaggttaaagtcatgccttcgg |
334 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| ||||||||||| || || |||| |
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| T |
37798361 |
agtgagtacccaaataatattgccatgatgaaggtaatgcctggagtaaggttgaacatagctagcataaatgttgctgaggttaaagcaataccctcgg |
37798262 |
T |
|
| Q |
335 |
ca-acatattcataaataaacttcccctgaaataatacatgac |
376 |
Q |
| |
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|| | | || ||||||||||||||||||||||| ||| |||| |
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| T |
37798261 |
cataaaggtttataaataaacttcccctgaaatattacgtgac |
37798219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 37807976 - 37807836
Alignment:
| Q |
9 |
aaggttgatatttgatgaccaaatattaatttctgctcctttgtagaatgtcaacaccatcgccccactaatccccattaatgttcctatcactttagcc |
108 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| |||||||||| ||| ||| | ||| ||||||| ||| || |||| ||||||||| ||||| ||| |
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| T |
37807976 |
aaggttgatattggaagaccaaatattaatttccactcctttgtaaaatatcataagcattgccccaccaatgccaattactgttcctattactttggcc |
37807877 |
T |
|
| Q |
109 |
tttccttctactacactccaatttagtttttccaatctatg |
149 |
Q |
| |
|
||||| ||||||| | ||||||||| |||||||||||||| |
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|
| T |
37807876 |
tttccctctactaatccccaatttagcttttccaatctatg |
37807836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 37781353 - 37781213
Alignment:
| Q |
9 |
aaggttgatatttgatgaccaaatattaatttctgctcctttgtagaatgtcaacaccatcgccccactaatccccattaatgttcctatcactttagcc |
108 |
Q |
| |
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|||||| ||||| || | |||||||| ||||||| ||||| |||| ||| ||| |||||| |||||||| || | |||| ||||||||| || || || |
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| T |
37781353 |
aaggtttatattggaagtccaaatatcaatttctactcctctgtaaaatatcatcaccattgccccactgatgctaattattgttcctattaccttggct |
37781254 |
T |
|
| Q |
109 |
tttccttctactacactccaatttagtttttccaatctatg |
149 |
Q |
| |
|
||||||||| ||| | ||||||||| |||||||||||||| |
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| T |
37781253 |
tttccttctgctaatccccaatttagcttttccaatctatg |
37781213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 37780876 - 37780823
Alignment:
| Q |
235 |
agtgagtacccgaagaatattgccatgatgaaggtaatgcctggagtaaggttg |
288 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||| |||||| |||||||| |
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| T |
37780876 |
agtgagtacccgaaggatatggccatgatgaaggtaactcctggaataaggttg |
37780823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 802 - 860
Target Start/End: Complemental strand, 37807398 - 37807340
Alignment:
| Q |
802 |
tacccaaacaatccgcatagaaatgctagagaaagcacattccgagtaatctttggtct |
860 |
Q |
| |
|
|||||||||||||| |||||||||| ||| |||| || |||| ||||||||||||||| |
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|
| T |
37807398 |
tacccaaacaatccacatagaaatgaaagaaaaagaaccttccaagtaatctttggtct |
37807340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 801 - 874
Target Start/End: Complemental strand, 37797209 - 37797136
Alignment:
| Q |
801 |
atacccaaacaatccgcatagaaatgctagagaaagcacattccgagtaatctttggtctttccttcctgcata |
874 |
Q |
| |
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|||||||||||| || |||| ||||| | | ||||||| |||| ||||||||||||||||| | ||||||||| |
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| T |
37797209 |
atacccaaacaacccagataggaatgccataaaaagcaccttccaagtaatctttggtcttttcctcctgcata |
37797136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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