View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4876-Insertion-4 (Length: 938)

Name: NF4876-Insertion-4
Description: NF4876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4876-Insertion-4
NF4876-Insertion-4
[»] chr2 (18 HSPs)
chr2 (25-290)||(38588149-38588426)
chr2 (65-186)||(38583482-38583602)
chr2 (74-186)||(8986927-8987038)
chr2 (74-186)||(8985574-8985685)
chr2 (783-938)||(29408348-29408499)
chr2 (783-861)||(1398005-1398082)
chr2 (84-186)||(32291155-32291256)
chr2 (803-861)||(3309446-3309503)
chr2 (783-840)||(16806053-16806110)
chr2 (783-840)||(16845334-16845391)
chr2 (797-852)||(20170945-20170999)
chr2 (784-938)||(21253030-21253181)
chr2 (819-938)||(11084346-11084463)
chr2 (795-852)||(42871933-42871989)
chr2 (802-865)||(12412986-12413048)
chr2 (802-865)||(12425046-12425108)
chr2 (807-860)||(25713534-25713586)
chr2 (804-852)||(45271876-45271924)
[»] chr5 (20 HSPs)
chr5 (220-317)||(42308836-42308933)
chr5 (783-861)||(39585371-39585448)
chr5 (783-938)||(6428534-6428687)
chr5 (783-861)||(17201896-17201973)
chr5 (85-186)||(11320486-11320585)
chr5 (784-852)||(1584234-1584301)
chr5 (788-840)||(25612737-25612789)
chr5 (795-915)||(32474644-32474762)
chr5 (783-861)||(12436154-12436231)
chr5 (802-839)||(1584059-1584096)
chr5 (784-861)||(8544148-8544224)
chr5 (797-854)||(11991712-11991768)
chr5 (803-852)||(28620581-28620629)
chr5 (83-139)||(24137644-24137700)
chr5 (783-852)||(19804294-19804362)
chr5 (807-906)||(20202167-20202263)
chr5 (811-861)||(39940167-39940216)
chr5 (807-840)||(248938-248971)
chr5 (807-852)||(36059594-36059638)
chr5 (807-840)||(37270121-37270154)
[»] chr7 (20 HSPs)
chr7 (74-175)||(6840606-6840706)
chr7 (783-938)||(16197301-16197453)
chr7 (74-186)||(46963064-46963175)
chr7 (785-854)||(2271359-2271427)
chr7 (109-187)||(6841471-6841548)
chr7 (74-187)||(2628243-2628355)
chr7 (85-186)||(15614261-15614361)
chr7 (85-186)||(46964429-46964529)
chr7 (804-861)||(39618216-39618272)
chr7 (795-938)||(37124629-37124769)
chr7 (783-861)||(27723804-27723881)
chr7 (783-840)||(35792525-35792582)
chr7 (84-148)||(44337384-44337448)
chr7 (72-147)||(21814465-21814539)
chr7 (807-865)||(1752094-1752151)
chr7 (783-861)||(12394777-12394854)
chr7 (787-852)||(33258953-33259017)
chr7 (808-914)||(47541928-47542034)
chr7 (788-840)||(39434495-39434547)
chr7 (131-184)||(17921256-17921308)
[»] chr4 (25 HSPs)
chr4 (74-186)||(16871651-16871762)
chr4 (783-898)||(34031487-34031601)
chr4 (784-861)||(47943980-47944056)
chr4 (784-852)||(1821091-1821158)
chr4 (784-861)||(45666831-45666907)
chr4 (783-861)||(17330942-17331019)
chr4 (783-861)||(19443065-19443142)
chr4 (783-938)||(24073352-24073505)
chr4 (784-938)||(50721384-50721535)
chr4 (83-186)||(16543360-16543462)
chr4 (783-936)||(9808070-9808219)
chr4 (787-852)||(9088768-9088832)
chr4 (78-147)||(37945522-37945591)
chr4 (784-845)||(46196520-46196581)
chr4 (783-840)||(49263614-49263671)
chr4 (807-914)||(41503034-41503139)
chr4 (90-164)||(16869528-16869601)
chr4 (783-840)||(25494308-25494365)
chr4 (784-861)||(46430421-46430497)
chr4 (783-838)||(6949563-6949618)
chr4 (783-838)||(37209563-37209618)
chr4 (783-861)||(49299339-49299417)
chr4 (83-136)||(24131825-24131878)
chr4 (783-852)||(54982175-54982243)
chr4 (788-839)||(38839921-38839972)
[»] chr1 (18 HSPs)
chr1 (74-187)||(6696014-6696126)
chr1 (85-186)||(15629358-15629458)
chr1 (783-934)||(41117441-41117590)
chr1 (783-852)||(36319459-36319527)
chr1 (783-861)||(13254165-13254242)
chr1 (783-840)||(6295210-6295267)
chr1 (89-164)||(15630161-15630235)
chr1 (807-867)||(2752176-2752235)
chr1 (807-854)||(40518628-40518674)
chr1 (783-837)||(39387082-39387136)
chr1 (784-861)||(11817513-11817589)
chr1 (809-852)||(11795508-11795550)
chr1 (809-840)||(23699827-23699858)
chr1 (807-837)||(23698886-23698916)
chr1 (85-147)||(28665018-28665079)
chr1 (84-189)||(2073375-2073482)
chr1 (807-840)||(30281165-30281198)
chr1 (807-840)||(52415697-52415730)
[»] scaffold0005 (1 HSPs)
scaffold0005 (785-937)||(257236-257386)
[»] chr6 (11 HSPs)
chr6 (784-938)||(8049807-8049961)
chr6 (83-158)||(22868489-22868563)
chr6 (783-861)||(14093228-14093305)
chr6 (83-147)||(9290663-9290727)
chr6 (84-186)||(18984497-18984598)
chr6 (85-186)||(10741772-10741871)
chr6 (74-145)||(18792843-18792914)
chr6 (105-187)||(21862688-21862769)
chr6 (83-185)||(33423986-33424087)
chr6 (784-861)||(25057089-25057165)
chr6 (807-840)||(26252051-26252084)
[»] chr3 (23 HSPs)
chr3 (783-938)||(45647043-45647195)
chr3 (83-186)||(42531289-42531391)
chr3 (784-938)||(2094217-2094369)
chr3 (783-861)||(2599583-2599660)
chr3 (783-861)||(16237009-16237086)
chr3 (74-186)||(814385-814498)
chr3 (83-186)||(46691458-46691559)
chr3 (83-186)||(50297460-50297562)
chr3 (783-837)||(5494168-5494222)
chr3 (93-189)||(814257-814351)
chr3 (85-147)||(50294694-50294756)
chr3 (91-187)||(42530589-42530683)
chr3 (72-147)||(16463005-16463079)
chr3 (787-849)||(296987-297048)
chr3 (783-861)||(27817964-27818041)
chr3 (74-180)||(30057091-30057196)
chr3 (787-852)||(9589294-9589358)
chr3 (787-840)||(12568924-12568977)
chr3 (787-840)||(13545388-13545441)
chr3 (783-861)||(34669203-34669281)
chr3 (807-838)||(38750498-38750529)
chr3 (85-147)||(18088145-18088206)
chr3 (783-852)||(37030387-37030456)
[»] scaffold1327 (1 HSPs)
scaffold1327 (784-938)||(1224-1375)
[»] chr8 (14 HSPs)
chr8 (98-186)||(43615458-43615545)
chr8 (812-938)||(7694941-7695065)
chr8 (807-914)||(29315278-29315383)
chr8 (795-861)||(32234214-32234279)
chr8 (784-861)||(5871366-5871442)
chr8 (84-148)||(20241062-20241126)
chr8 (84-148)||(20251941-20252005)
chr8 (83-164)||(33199431-33199512)
chr8 (807-840)||(36683462-36683495)
chr8 (785-852)||(38402071-38402136)
chr8 (802-852)||(14897108-14897157)
chr8 (807-861)||(34146796-34146849)
chr8 (796-852)||(3443350-3443406)
chr8 (807-840)||(35970119-35970152)
[»] scaffold0002 (1 HSPs)
scaffold0002 (85-187)||(406256-406357)
[»] scaffold0511 (1 HSPs)
scaffold0511 (74-145)||(11227-11298)
[»] scaffold0018 (1 HSPs)
scaffold0018 (808-861)||(184587-184639)
[»] scaffold0841 (1 HSPs)
scaffold0841 (807-860)||(3872-3924)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 4e-93; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 25 - 290
Target Start/End: Original strand, 38588149 - 38588426
Alignment:
Q  25 tagtttcaagaaagaataaagggactgctagaatttcaacagaatacaaaatagattgacattacaaaaggttataagaaaatatataataaaacctaac 124  Q
    ||||||||||||||||||||||||| | ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38588149 tagtttcaagaaagaataaagggacggttagaatttcaatagaatataaaatagattgacattacaaaaggttataagaaaatatataataaaacctaac 38588248  T
Q  125 gcactctaactta-------------ctgatataaaagacccaataacttaagtctaatattttcttatctaacaacttcatcatcccaatccatnnnnn 211  Q
      |||||||||||             || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  38588249 ctactctaacttattaatctaacttactaatataaaagacc-aataacttaagtctaatattttcttatctaacaacttcatcatcccaatccataaaaa 38588347  T
Q  212 nntgctgccttcctccatttttcagcttcttgtttcatccttttttgtttgctctttcttcttgcaagtgcaaccatcc 290  Q
      ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38588348 aatgctgccttcctcaatttttcagcttcttgtttcatccttttttgtttgctctttcttcttgcaagtgcaaccatcc 38588426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 65 - 186
Target Start/End: Original strand, 38583482 - 38583602
Alignment:
Q  65 agaatacaaaatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaag 164  Q
    ||||||||||||| ||||||||||||||||||||||||  |||||||||||||| ||||||   ||||||||||| |||| |||| |||||||| |||||    
T  38583482 agaatacaaaataaattgacattacaaaaggttataagcgaatatataataaaatctaacgggttctaacttactaatat-aaaggcccaataatttaag 38583580  T
Q  165 tctaatattttcttatctaaca 186  Q
     |||||||||| ||||||||||    
T  38583581 cctaatattttattatctaaca 38583602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 74 - 186
Target Start/End: Complemental strand, 8987038 - 8986927
Alignment:
Q  74 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatatt 173  Q
    ||||| || ||||||||||||||||||||| ||||||||||||||  ||| | ||||||||||||| ||||||| | |||||||||||||| |||||| |    
T  8987038 aatagcttaacattacaaaaggttataagagaatatataataaaatttaatggactctaacttactaatataaatg-cccaataacttaagcctaatact 8986940  T
Q  174 ttcttatctaaca 186  Q
    || ||||||||||    
T  8986939 ttattatctaaca 8986927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 74 - 186
Target Start/End: Complemental strand, 8985685 - 8985574
Alignment:
Q  74 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatatt 173  Q
    ||||| || ||||||||||||||||||||| |||||||||||||| |||| | ||| ||||||||| ||||||| |  ||||||||||||| |||||| |    
T  8985685 aatagcttaacattacaaaaggttataagagaatatataataaaatctaatggactttaacttactaatataaatg-tccaataacttaagcctaatact 8985587  T
Q  174 ttcttatctaaca 186  Q
    || ||||||||||    
T  8985586 ttattatctaaca 8985574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 783 - 938
Target Start/End: Original strand, 29408348 - 29408499
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataattttatttatttatttggcat 882  Q
    ||||||||| ||||||||  |||||||||||||||||||||||||| |||||||| |||||||||||||| | ||| || ||   |||||| ||   |||    
T  29408348 gaaaattaacaccaaaataacgatgtgtatttttgcacattttctttctattata-ccctcattttaatccaccaacaaatt--cttatttttt---cat 29408441  T
Q  883 acactttatcttttc-ataaattt-atatgttatcattctctagtaccaaacaattgt 938  Q
    ||||||||||||||| |||||||| |||||||||| ||||||  || |||||||||||    
T  29408442 acactttatcttttcaataaatttaatatgttatctttctctcataacaaacaattgt 29408499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 783 - 861
Target Start/End: Complemental strand, 1398082 - 1398005
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| | ||||||    
T  1398082 gaaaattaacaccaaaatagcgatgtgtatttttgcacattttcttccaattata-ccctcattttaatccaccaataa 1398005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 84 - 186
Target Start/End: Complemental strand, 32291256 - 32291155
Alignment:
Q  84 cattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatcta 183  Q
    |||||||||||||||||||| ||||||||||||| | ||| | ||||||||||||| |||| |||||| ||||||||||||   |||| ||| |||||||    
T  32291256 cattacaaaaggttataagagaatatataataaatcttaatggactctaacttactaatat-aaagacacaataacttaagctcaatactttattatcta 32291158  T
Q  184 aca 186  Q
    |||    
T  32291157 aca 32291155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 803 - 861
Target Start/End: Original strand, 3309446 - 3309503
Alignment:
Q  803 cgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||    
T  3309446 cgatgtgtatttttgcacattttcttcctattata-ccctcattttaattcatcaataa 3309503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 783 - 840
Target Start/End: Original strand, 16806053 - 16806110
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattataccc 840  Q
    ||||||||| |||||||| | ||||||||||||||||| |||||||||||||||||||    
T  16806053 gaaaattaaaaccaaaatagtgatgtgtatttttgcacgttttcttcctattataccc 16806110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 783 - 840
Target Start/End: Original strand, 16845334 - 16845391
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattataccc 840  Q
    ||||||||| |||||||| | ||||||||||||||||| |||||||||||||||||||    
T  16845334 gaaaattaaaaccaaaatagtgatgtgtatttttgcacgttttcttcctattataccc 16845391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 797 - 852
Target Start/End: Original strand, 20170945 - 20170999
Alignment:
Q  797 aaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatc 852  Q
    |||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  20170945 aaatagcgaagtgtatttttgcacattttcttcctattata-ccctcattttaatc 20170999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 784 - 938
Target Start/End: Complemental strand, 21253181 - 21253030
Alignment:
Q  784 aaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataattttatttatttatttggcata 883  Q
    |||||||| || ||||| ||||||  |||||||||| ||||| ||  |||||||||  ||||||||||| | |||||| |  |||| ||| ||| ||| |    
T  21253181 aaaattaacactaaaatagcgatgcatatttttgcatattttttt--tattatacct-tcattttaatccaccaataaat--attttttttttttgcaca 21253087  T
Q  884 cactttatcttttca-taaattta-tatgttatcattctctagtaccaaacaattgt 938  Q
    ||||||||||||||| |||||||| ||||||||  |||||||||| |||||||||||    
T  21253086 cactttatcttttcaataaatttaatatgttatttttctctagtaacaaacaattgt 21253030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 819 - 938
Target Start/End: Complemental strand, 11084463 - 11084346
Alignment:
Q  819 acattttcttcctattatacccctcattttaatctatcaataattttatttat-ttatttggcatacactttatcttttc-ataaattt-atatgttatc 915  Q
    ||||||||||||||||||| |||||||||||||||| |||||    |||| || |||||| ||| ||||||| ||||| | |||||||| ||||||||||    
T  11084463 acattttcttcctattata-ccctcattttaatctaccaata----tattcatattattttgcacacactttctctttccaataaatttaatatgttatc 11084369  T
Q  916 attctctagtaccaaacaattgt 938  Q
     |||||| ||| |||||| ||||    
T  11084368 tttctctcgtaacaaacatttgt 11084346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 795 - 852
Target Start/End: Original strand, 42871933 - 42871989
Alignment:
Q  795 caaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatc 852  Q
    |||||| |||| ||||||||||||| ||||||||||||| ||| ||||||||||||||    
T  42871933 caaaatagcgaagtgtatttttgcatattttcttcctatcata-ccctcattttaatc 42871989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 802 - 865
Target Start/End: Complemental strand, 12413048 - 12412986
Alignment:
Q  802 gcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataatttt 865  Q
    |||| ||||||||||||||| ||| ||||||||||| |||||||||||||| || |||| ||||    
T  12413048 gcgaagtgtatttttgcacacttttttcctattata-ccctcattttaatccattaatagtttt 12412986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 802 - 865
Target Start/End: Complemental strand, 12425108 - 12425046
Alignment:
Q  802 gcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataatttt 865  Q
    |||| ||||||||||||||| ||| ||||||||||| |||||||||||||| || |||| ||||    
T  12425108 gcgaagtgtatttttgcacacttttttcctattata-ccctcattttaatccattaatagtttt 12425046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 807 - 860
Target Start/End: Original strand, 25713534 - 25713586
Alignment:
Q  807 gtgtatttttgcacattttcttcctattatacccctcattttaatctatcaata 860  Q
    |||||||||| ||  |||||||||||||||| |||||||||||||||| |||||    
T  25713534 gtgtattttttcagtttttcttcctattata-ccctcattttaatctaacaata 25713586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 804 - 852
Target Start/End: Original strand, 45271876 - 45271924
Alignment:
Q  804 gatgtgtattttt-gcacattttcttcctattatacccctcattttaatc 852  Q
    ||||||||||||| | ||||||||||||||||||| ||||||||||||||    
T  45271876 gatgtgtattttttgtacattttcttcctattata-ccctcattttaatc 45271924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 5e-31; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 220 - 317
Target Start/End: Original strand, 42308836 - 42308933
Alignment:
Q  220 cttcctccatttttcagcttcttgtttcatccttttttgtttgctctttcttcttgcaagtgcaaccatcctatgccactagaaaggtaagtgctaaa 317  Q
    |||||||||| ||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| |||||||    
T  42308836 cttcctccatatttcagcttcttgtttcattctcttttgtttgctttttcttcttgcaagtgcaaccatcctatgccattggaaaggtaaatgctaaa 42308933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 783 - 861
Target Start/End: Original strand, 39585371 - 39585448
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    ||||||||| |||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  39585371 gaaaattaacaccaaaatagcgacgtgtatttttgcacattttcttcctattata-ccctcattttaatccatcaataa 39585448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 783 - 938
Target Start/End: Complemental strand, 6428687 - 6428534
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataattttatttatttatttggcat 882  Q
    ||||||||| |||||||| | ||||||||||||||||||||||||| |||||||| || ||||||||||| | |||||| ||    ||||| ||| |||     
T  6428687 gaaaattaacaccaaaatagtgatgtgtatttttgcacattttctttctattata-ccttcattttaatccaccaataagtt--cctattt-ttttgcac 6428592  T
Q  883 acactttatcttttc-ataaattt-atatgttatcattctctagtaccaaacaattgt 938  Q
    ||||||||||||| | |||||||| |||||||||| |||||| ||| |||||||||||    
T  6428591 acactttatctttccaataaatttaatatgttatctttctctcgtaacaaacaattgt 6428534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 783 - 861
Target Start/End: Original strand, 17201896 - 17201973
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    ||||||||| |  ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||    
T  17201896 gaaaattaacataaaaatagcgatgtgtatttttgcacattttcttcctattata-ccctcattttaatccaccaataa 17201973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 11320486 - 11320585
Alignment:
Q  85 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatctaa 184  Q
    ||||||||||||||||||| ||||||||||||||  ||| | |||| |||||||| |||| ||||| ||||||||||||||||||||  || ||||||||    
T  11320486 attacaaaaggttataagagaatatataataaaa-ttaatggactccaacttactaatat-aaagagccaataacttaagtctaatacattattatctaa 11320583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 784 - 852
Target Start/End: Complemental strand, 1584301 - 1584234
Alignment:
Q  784 aaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatc 852  Q
    |||||||| |||||| | ||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  1584301 aaaattaacaccaaattagcgatgtgtatttttgcacattttctttctattata-ccctcattttaatc 1584234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 788 - 840
Target Start/End: Original strand, 25612737 - 25612789
Alignment:
Q  788 ttaataccaaaattgcgatgtgtatttttgcacattttcttcctattataccc 840  Q
    |||| |||||| | |||||||||||||||||||||||||||||||||||||||    
T  25612737 ttaacaccaaattagcgatgtgtatttttgcacattttcttcctattataccc 25612789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 795 - 915
Target Start/End: Complemental strand, 32474762 - 32474644
Alignment:
Q  795 caaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataattttatttatttatttggcatacactttatctt 894  Q
    |||||| ||||| ||||||||||||||||||||| |||||||| |||||||||||||| | |||||| || |  ||||| ||| ||| ||||||||||||    
T  32474762 caaaatagcgatttgtatttttgcacattttctttctattata-ccctcattttaatccaacaataaattca--tattt-tttcgcaaacactttatctt 32474667  T
Q  895 ttc-ataaattt-atatgttatc 915  Q
    | | |||||||| ||||||||||    
T  32474666 tccaataaatttaatatgttatc 32474644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 783 - 861
Target Start/End: Original strand, 12436154 - 12436231
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    ||||||||| ||||||||   |||||||||||||||||||||||||| ||||||| | |||||||||||| | ||||||    
T  12436154 gaaaattaacaccaaaataatgatgtgtatttttgcacattttcttcatattata-cactcattttaatccaccaataa 12436231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 802 - 839
Target Start/End: Complemental strand, 1584096 - 1584059
Alignment:
Q  802 gcgatgtgtatttttgcacattttcttcctattatacc 839  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1584096 gcgatgtgtatttttgcacattttcttcctattatacc 1584059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 784 - 861
Target Start/End: Original strand, 8544148 - 8544224
Alignment:
Q  784 aaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    |||||||| |||||| |  | ||||||||||||||||||||||||| ||||||| |||||||||||||| | ||||||    
T  8544148 aaaattaacaccaaattaacaatgtgtatttttgcacattttcttcatattata-ccctcattttaatccaccaataa 8544224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 797 - 854
Target Start/End: Original strand, 11991712 - 11991768
Alignment:
Q  797 aaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatcta 854  Q
    |||| ||||||||||||||||||||||||||||||| |||| || |||||||||||||    
T  11991712 aaatagcgatgtgtatttttgcacattttcttcctaatata-ccttcattttaatcta 11991768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 803 - 852
Target Start/End: Complemental strand, 28620629 - 28620581
Alignment:
Q  803 cgatgtgtatttttgcacattttcttcctattatacccctcattttaatc 852  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  28620629 cgatgtgtatttttgcaccttttcttcctattata-ccctcattttaatc 28620581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 24137700 - 24137644
Alignment:
Q  83 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttact 139  Q
    |||||||| |||||||||||| |||||||||||||||||||   |||||||||||||    
T  24137700 acattacagaaggttataagagaatatataataaaacctaatagactctaacttact 24137644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 783 - 852
Target Start/End: Complemental strand, 19804362 - 19804294
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatc 852  Q
    ||||||||| || ||| | || ||||||||||||| |||||||||||||||| || ||||||||||||||    
T  19804362 gaaaattaacactaaattagcaatgtgtatttttgtacattttcttcctattcta-ccctcattttaatc 19804294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 807 - 906
Target Start/End: Complemental strand, 20202263 - 20202167
Alignment:
Q  807 gtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataattttatttatttatttggcatacactttatcttttc-ataaattt 905  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||  |  |||||||| |  ||||| ||| ||| ||||||||||||||| ||||||||    
T  20202263 gtgtatttttgcacatttttttcctattata-ccctcattttaattcactaataatttca--tattt-ttttgcacacactttatcttttcaataaattt 20202168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 811 - 861
Target Start/End: Original strand, 39940167 - 39940216
Alignment:
Q  811 atttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    ||||||| ||||||||||||||||||| |||||||||||||| | ||||||    
T  39940167 atttttgtacattttcttcctattata-ccctcattttaatccaccaataa 39940216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 807 - 840
Target Start/End: Original strand, 248938 - 248971
Alignment:
Q  807 gtgtatttttgcacattttcttcctattataccc 840  Q
    |||||||||| |||||||||||||||||||||||    
T  248938 gtgtatttttacacattttcttcctattataccc 248971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 807 - 852
Target Start/End: Original strand, 36059594 - 36059638
Alignment:
Q  807 gtgtatttttgcacattttcttcctattatacccctcattttaatc 852  Q
    |||||||||| |||||||| ||||||||||| ||||||||||||||    
T  36059594 gtgtattttttcacatttttttcctattata-ccctcattttaatc 36059638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 807 - 840
Target Start/End: Complemental strand, 37270154 - 37270121
Alignment:
Q  807 gtgtatttttgcacattttcttcctattataccc 840  Q
    |||||||||||||||||||||||||| |||||||    
T  37270154 gtgtatttttgcacattttcttcctactataccc 37270121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 3e-26; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 74 - 175
Target Start/End: Original strand, 6840606 - 6840706
Alignment:
Q  74 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatatt 173  Q
    ||||| || ||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||  |||||    
T  6840606 aatagctttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactgatat-aaaggcccaataacttaagtccgatatt 6840704  T
Q  174 tt 175  Q
    ||    
T  6840705 tt 6840706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 783 - 938
Target Start/End: Complemental strand, 16197453 - 16197301
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataattttatttatttatttggcat 882  Q
    ||||||||| |||||||| | ||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||    |||  | | ||| ||||    
T  16197453 gaaaattaacaccaaaatagtgatgtgtatttttgcacattttctttctattata-ccctcattttaatccatcaataa----attcctattttttgcat 16197359  T
Q  883 acactttatcttttc-ataaattt-atatgttatcattctctagtaccaaacaattgt 938  Q
    | ||||||||||| | |||||||| |||||||||| |||||| ||| |||||||||||    
T  16197358 aaactttatctttccaataaatttaatatgttatctttctcttgtaacaaacaattgt 16197301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 74 - 186
Target Start/End: Original strand, 46963064 - 46963175
Alignment:
Q  74 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatatt 173  Q
    ||||| || ||||||||||||||||||||| ||||| |||||||| |||| | ||||||||||||| ||||||| | |||||||||||||| |||||| |    
T  46963064 aatagcttaacattacaaaaggttataagagaatatctaataaaatctaatggactctaacttactaatataaatg-cccaataacttaagcctaatact 46963162  T
Q  174 ttcttatctaaca 186  Q
    || ||||||||||    
T  46963163 ttattatctaaca 46963175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 785 - 854
Target Start/End: Original strand, 2271359 - 2271427
Alignment:
Q  785 aaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatcta 854  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  2271359 aaattaacaccaaaatagcgatgtgtatttttgcacattttcttcctattata-tcctcattttaatcta 2271427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 6841471 - 6841548
Alignment:
Q  109 tataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatctaacaa 187  Q
    |||||||||| |||||| |||||||||||||||||| |||| ||||||||||||||||  ||||||| |||||||||||    
T  6841471 tataataaaatctaacggactctaacttactgatat-aaaggcccaataacttaagtccgatattttattatctaacaa 6841548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 74 - 187
Target Start/End: Original strand, 2628243 - 2628355
Alignment:
Q  74 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatatt 173  Q
    ||||| || |||||||||||  |||| ||| ||||||||||||||||||| | ||||||||||||| |||| |||||| ||||||||||||   |||| |    
T  2628243 aatagtttaacattacaaaaaattatgagagaatatataataaaacctaatggactctaacttactaatat-aaagactcaataacttaagctcaatact 2628341  T
Q  174 ttcttatctaacaa 187  Q
    || |||||||||||    
T  2628342 ttattatctaacaa 2628355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 15614261 - 15614361
Alignment:
Q  85 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatctaa 184  Q
    ||||||||||||||||| | ||||||||||||||||||| | |||||||||| || |||| ||||  ||||||||||||| | |||| ||| ||||||||    
T  15614261 attacaaaaggttataaaagaatatataataaaacctaatggactctaacttgctaatat-aaaggtccaataacttaagcccaatactttattatctaa 15614359  T
Q  185 ca 186  Q
    ||    
T  15614360 ca 15614361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 46964429 - 46964529
Alignment:
Q  85 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatctaa 184  Q
    ||||||||| ||||||||| |||||||||||||| |||| | |||||||| |||| ||||||| | |||||||||||||| |||||  ||| ||||||||    
T  46964429 attacaaaaagttataagagaatatataataaaatctaatggactctaacgtactaatataaatg-cccaataacttaagcctaatcctttattatctaa 46964527  T
Q  185 ca 186  Q
    ||    
T  46964528 ca 46964529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 804 - 861
Target Start/End: Complemental strand, 39618272 - 39618216
Alignment:
Q  804 gatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||    
T  39618272 gatgtgtatttttgcacattttcttcctattata-ccctcattttaatccaccaataa 39618216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 795 - 938
Target Start/End: Complemental strand, 37124769 - 37124629
Alignment:
Q  795 caaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataattttatttatttatttggcatacactttatctt 894  Q
    |||||| || |||||| |||||||||||||||||||||||||| |||| ||||||||| |  |||||    ||| |||| ||| ||| ||||||||||||    
T  37124769 caaaatagcaatgtgtgtttttgcacattttcttcctattata-ccctgattttaatcaacaaataa----attcattttttttgcacacactttatctt 37124675  T
Q  895 ttc-ataaattt-atatgttatcattctctagtaccaaacaattgt 938  Q
    | | |||||||| |||||||||| ||||||  || |||||||||||    
T  37124674 tccaataaatttaatatgttatctttctctcataacaaacaattgt 37124629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 783 - 861
Target Start/End: Complemental strand, 27723881 - 27723804
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    ||||||||| |||||||| ||||||| |||||||  | ||||||||||||||||| |||||||||||||| | ||||||    
T  27723881 gaaaattaacaccaaaatagcgatgtatatttttaaatattttcttcctattata-ccctcattttaatccaccaataa 27723804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 783 - 840
Target Start/End: Original strand, 35792525 - 35792582
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattataccc 840  Q
    ||||||||| || ||||| |||||||||||||||||| ||||| ||||||||||||||    
T  35792525 gaaaattaacacaaaaatagcgatgtgtatttttgcatatttttttcctattataccc 35792582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 44337448 - 44337384
Alignment:
Q  84 cattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaa 148  Q
    |||||| ||| ||||||||| |||||||||||||| |||||| |||||||||||||  |||||||    
T  44337448 cattactaaatgttataagagaatatataataaaatctaacggactctaacttactactataaaa 44337384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 21814539 - 21814465
Alignment:
Q  72 aaaatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaa 147  Q
    |||||||||| ||||||||||||  ||| ||| |||||||||| |||||||| | ||||||||||||| |||||||    
T  21814539 aaaatagattaacattacaaaagaatattagagaatatataat-aaacctaatggactctaacttactaatataaa 21814465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 807 - 865
Target Start/End: Original strand, 1752094 - 1752151
Alignment:
Q  807 gtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataatttt 865  Q
    |||||||||| ||||||||||| |||||||| ||||||| |||||| ||||||||||||    
T  1752094 gtgtattttttcacattttctttctattata-ccctcatgttaatccatcaataatttt 1752151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 783 - 861
Target Start/End: Complemental strand, 12394854 - 12394777
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    |||||| || ||||||||   |||||| ||||||||||||||||||||||||||| | |||||||||||| | ||||||    
T  12394854 gaaaatgaacaccaaaataatgatgtgcatttttgcacattttcttcctattata-ctctcattttaatccaccaataa 12394777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 787 - 852
Target Start/End: Complemental strand, 33259017 - 33258953
Alignment:
Q  787 attaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatc 852  Q
    ||||| ||||||||  ||| ||||||||||| | ||||||||||||||||| ||||||||||||||    
T  33259017 attaacaccaaaataacgaagtgtatttttgtagattttcttcctattata-ccctcattttaatc 33258953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 808 - 914
Target Start/End: Complemental strand, 47542034 - 47541928
Alignment:
Q  808 tgtatttttgcacattttcttcctattatacccctcattttaatctatcaataattttatttatttatttggcatacactttatcttttc-ataaattt- 905  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||| | |||||| ||| | | ||| ||| ||  ||||||||||||| | ||||||||     
T  47542034 tgtatttttgcacgttttcttcctattata--cctcattttaatccaccaataaatttctctgttttttttgcgcacactttatctttccaataaattta 47541937  T
Q  906 atatgttat 914  Q
    |||||||||    
T  47541936 atatgttat 47541928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 788 - 840
Target Start/End: Complemental strand, 39434547 - 39434495
Alignment:
Q  788 ttaataccaaaattgcgatgtgtatttttgcacattttcttcctattataccc 840  Q
    ||||||| ||||| |||| ||||||||||||||| ||| ||||||||||||||    
T  39434547 ttaatacaaaaatagcgaagtgtatttttgcacacttttttcctattataccc 39434495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 17921256 - 17921308
Alignment:
Q  131 taacttactgatataaaagacccaataacttaagtctaatattttcttatctaa 184  Q
    ||||||||| ||||||| ||| ||||||||||||||||||| ||| ||||||||    
T  17921256 taacttactaatataaa-gacacaataacttaagtctaatactttattatctaa 17921308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 1e-25; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 74 - 186
Target Start/End: Complemental strand, 16871762 - 16871651
Alignment:
Q  74 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatatt 173  Q
    ||||| || ||||||||||||||||||||| |||||||||||||| |||| | ||||||||||||| ||||||| | |||||||||||||| |||||| |    
T  16871762 aatagcttaacattacaaaaggttataagataatatataataaaatctaatggactctaacttactaatataaatg-cccaataacttaagcctaatact 16871664  T
Q  174 ttcttatctaaca 186  Q
    || ||||||||||    
T  16871663 ttattatctaaca 16871651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 783 - 898
Target Start/End: Original strand, 34031487 - 34031601
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataattttatttatttatttggcat 882  Q
    ||||||||| |||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||| | |||||| || | || ||| ||| |||     
T  34031487 gaaaattaagaccaaaatagtgatgtgtatttttgcacattttcttcctattata-ccctcattttaatccaccaataaattcaatttttttttttgcac 34031585  T
Q  883 acactttatcttttca 898  Q
    ||||||||||||||||    
T  34031586 acactttatcttttca 34031601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 784 - 861
Target Start/End: Original strand, 47943980 - 47944056
Alignment:
Q  784 aaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||    
T  47943980 aaaattaacaccaaaatagcgatgtgtatttttgcacattttcttcctattata-ccctcattttaatccaccaataa 47944056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 784 - 852
Target Start/End: Original strand, 1821091 - 1821158
Alignment:
Q  784 aaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatc 852  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1821091 aaaattaacaccaaaatagcgatgtgtatttttgcacattttcttcctattata-ccctcattttaatc 1821158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 784 - 861
Target Start/End: Complemental strand, 45666907 - 45666831
Alignment:
Q  784 aaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    |||||| | |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||    
T  45666907 aaaattcacaccaaaatagcgatgtgtatttttgcacattttcttcctattata-ccctcattttaatccaccaataa 45666831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 783 - 861
Target Start/End: Complemental strand, 17331019 - 17330942
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    ||||||||| |||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||||  ||||||||    
T  17331019 gaaaattaacaccaaaatagcaatgtgtatttttgcacattttcttcctattata-ccctaattttaatgcatcaataa 17330942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 783 - 861
Target Start/End: Original strand, 19443065 - 19443142
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    ||||||||||||||| ||  |||||| |||||||||||||||||||||||||||| |||||||||||||| | ||||||    
T  19443065 gaaaattaataccaagataacgatgtatatttttgcacattttcttcctattata-ccctcattttaatccaccaataa 19443142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 783 - 938
Target Start/End: Original strand, 24073352 - 24073505
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataattttatttatttatttggcat 882  Q
    ||||||||| |||||||| || | |||||||||||||||||||||||||| |||| | ||| |||||||| | |||||| ||  | ||||| ||| |||     
T  24073352 gaaaattaacaccaaaatagcaaagtgtatttttgcacattttcttcctaatata-ctctcgttttaatccaccaataaatt--tctatttcttt-gcac 24073447  T
Q  883 acactttatcttttc-ataaattt-atatgttatcattctctagtaccaaacaattgt 938  Q
    ||||||||||||||| |||||||| |||||||||  |||||| ||| |||||||||||    
T  24073448 acactttatcttttcaataaatttaatatgttatatttctctcgtaacaaacaattgt 24073505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 784 - 938
Target Start/End: Complemental strand, 50721535 - 50721384
Alignment:
Q  784 aaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataattttatttatttatttggcata 883  Q
    |||||||| |||||||| || |||| |||||||| ||||||||||||||||||| |||| |||| |||||| |||||| ||  |||| |  ||| ||| |    
T  50721535 aaaattaacaccaaaatagcaatgtatatttttgtacattttcttcctattata-cccttatttcaatctaccaataaatt--tttagt--ttttgcaca 50721441  T
Q  884 cactttatcttttca-taaattt-atatgttatcattctctagtaccaaacaattgt 938  Q
    |||||||||||| || ||||||| |||||||||| |||||| ||| |||||||||||    
T  50721440 cactttatctttccactaaatttaatatgttatctttctctcgtaacaaacaattgt 50721384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 186
Target Start/End: Complemental strand, 16543462 - 16543360
Alignment:
Q  83 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatct 182  Q
    ||||| |||||||||| | || ||||||||||||||| ||| | ||||||||||||| |||||||||  ||||||||||||||| | || ||| ||||||    
T  16543462 acattgcaaaaggttacatgagaatatataataaaacttaatgaactctaacttactaatataaaag-gccaataacttaagtccattactttattatct 16543364  T
Q  183 aaca 186  Q
    ||||    
T  16543363 aaca 16543360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 783 - 936
Target Start/End: Complemental strand, 9808219 - 9808070
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataattttatttatttatttggcat 882  Q
    ||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||  ||||||||||||| |  |||||    |||  | | ||| |||     
T  9808219 gaaaattaacaccaaaatagcgatgtgtattttt-cacattttcttcctattata-tcctcattttaatccactaataa----attcctattttttgcac 9808126  T
Q  883 acactttatcttt-tcataaattt-atatgttatcattctctagtaccaaacaatt 936  Q
    ||||||||||||| | |||||||| |||||||||| |||||| ||| |||||||||    
T  9808125 acactttatctttctaataaatttaatatgttatctttctctcgtaacaaacaatt 9808070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 787 - 852
Target Start/End: Original strand, 9088768 - 9088832
Alignment:
Q  787 attaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatc 852  Q
    ||||| || ||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  9088768 attaacactaaaatagcgatgtgtattcttgcacattttcttcctattata-ccctcattttaatc 9088832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 37945591 - 37945522
Alignment:
Q  78 gattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaa 147  Q
    |||| ||||||||||||||||||||| ||||||||||||||  ||| | ||||||||||||| |||||||    
T  37945591 gattaacattacaaaaggttataagagaatatataataaaatttaatggactctaacttactaatataaa 37945522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 784 - 845
Target Start/End: Complemental strand, 46196581 - 46196520
Alignment:
Q  784 aaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcat 845  Q
    |||||||| |||||||| |||| ||||||||||||| ||||||||||||||||||| |||||    
T  46196581 aaaattaacaccaaaatagcgaggtgtatttttgcatattttcttcctattatacctctcat 46196520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 783 - 840
Target Start/End: Complemental strand, 49263671 - 49263614
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattataccc 840  Q
    ||||||||| |||||||| |||| ||||||||||||||||||||||||||||| ||||    
T  49263671 gaaaattaacaccaaaatagcgaagtgtatttttgcacattttcttcctattagaccc 49263614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 807 - 914
Target Start/End: Complemental strand, 41503139 - 41503034
Alignment:
Q  807 gtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataattttatttatttatttggcatacactttatcttt-tcataaattt 905  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||| | |||||  ||||| |||   ||||||| ||||||||||||| | ||||||||    
T  41503139 gtgtatttttgcacattttcttcctattata-ccctcaatttaatccaccaatatatttatatat---tttggcacacactttatctttctaataaattt 41503044  T
Q  906 -atatgttat 914  Q
     |||||||||    
T  41503043 aatatgttat 41503034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 16869601 - 16869528
Alignment:
Q  90 aaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaag 164  Q
    |||| ||||||||| | |||||||||||| |||| | ||||||||||||| ||||||||| ||||||||||||||    
T  16869601 aaaaagttataagagagtatataataaaatctaatgaactctaacttactaatataaaag-cccaataacttaag 16869528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 783 - 840
Target Start/End: Complemental strand, 25494365 - 25494308
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattataccc 840  Q
    ||||||||| |||||| | |||||||| ||||||||||||| ||||||||||||||||    
T  25494365 gaaaattaacaccaaattagcgatgtgcatttttgcacattgtcttcctattataccc 25494308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 784 - 861
Target Start/End: Original strand, 46430421 - 46430497
Alignment:
Q  784 aaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    |||||||| ||||||||  ||||||||||||||| | ||||||||||||||| | | |||||||||||||| ||||||    
T  46430421 aaaattaacaccaaaataacgatgtgtatttttgaatattttcttcctattaca-ctctcattttaatctaccaataa 46430497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 783 - 838
Target Start/End: Complemental strand, 6949618 - 6949563
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatac 838  Q
    ||||||||| |||||| |  ||||||||||||||| ||||||||||||||||||||    
T  6949618 gaaaattaacaccaaattaacgatgtgtatttttgtacattttcttcctattatac 6949563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 783 - 838
Target Start/End: Original strand, 37209563 - 37209618
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatac 838  Q
    ||||||||  |||||||| |||||||||||||||| ||||||||||||||| ||||    
T  37209563 gaaaattaccaccaaaatagcgatgtgtatttttgtacattttcttcctatcatac 37209618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 783 - 861
Target Start/End: Original strand, 49299339 - 49299417
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttctt-cctattatacccctcattttaatctatcaataa 861  Q
    ||||||||| || ||||| ||||||||||||||||||| |||| || || |||||| |||||||||||||| ||||||||    
T  49299339 gaaaattaacacaaaaatagcgatgtgtatttttgcacttttttttcccaattata-ccctcattttaatccatcaataa 49299417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 24131878 - 24131825
Alignment:
Q  83 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaactt 136  Q
    ||||||||||| ||||||||| || |||||||||||||||| | ||||||||||    
T  24131878 acattacaaaatgttataagagaacatataataaaacctaatggactctaactt 24131825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 783 - 852
Target Start/End: Original strand, 54982175 - 54982243
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatc 852  Q
    ||||||||| | |||||| | ||||||||||||||||| ||||||| |||||||  ||||||||||||||    
T  54982175 gaaaattaacatcaaaatagtgatgtgtatttttgcacgttttctttctattat-gccctcattttaatc 54982243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 788 - 839
Target Start/End: Original strand, 38839921 - 38839972
Alignment:
Q  788 ttaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacc 839  Q
    |||| |||||||  ||||||| ||||||||||||||||||| ||||||||||    
T  38839921 ttaacaccaaaacagcgatgtatatttttgcacattttctttctattatacc 38839972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 7e-24; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 74 - 187
Target Start/End: Complemental strand, 6696126 - 6696014
Alignment:
Q  74 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatatt 173  Q
    ||||| || ||||||||||||||||||||| ||||| |||||||| |||| | ||||||||||||| ||||||| | |||||||||||||| |||||| |    
T  6696126 aatagcttaacattacaaaaggttataagagaatatttaataaaatctaatggactctaacttactaatataaatg-cccaataacttaagcctaatact 6696028  T
Q  174 ttcttatctaacaa 187  Q
    || |||||||||||    
T  6696027 ttattatctaacaa 6696014  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 15629358 - 15629458
Alignment:
Q  85 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatctaa 184  Q
    ||||||||||||||||||| |||||||||||||| |||| | ||||||||||||| |||| ||||  ||||||||||||| | |||||||| ||||||||    
T  15629358 attacaaaaggttataagagaatatataataaaatctaatgaactctaacttactaatat-aaaggtccaataacttaagcccaatattttattatctaa 15629456  T
Q  185 ca 186  Q
    ||    
T  15629457 ca 15629458  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 783 - 934
Target Start/End: Complemental strand, 41117590 - 41117441
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataattttatttatttatttggcat 882  Q
    ||||||||| |||||| | ||||||||||||||||||  |||| || |||||||| |||||||||||||| | |||||| ||  ||||||| ||| |||     
T  41117590 gaaaattaacaccaaactagcgatgtgtatttttgcattttttttttctattata-ccctcattttaatccaccaataaatt--tttattt-ttttgcac 41117495  T
Q  883 acactttatcttttc-ataaattt-atatgttatcattctctagtaccaaacaa 934  Q
    ||||||||||||| | |||||||| |||||||||| |||||| ||| |||||||    
T  41117494 acactttatctttccaataaatttaatatgttatctttctctcgtaacaaacaa 41117441  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 783 - 852
Target Start/End: Original strand, 36319459 - 36319527
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatc 852  Q
    ||||||||| || ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  36319459 gaaaattaacacaaaaatagcgatgtgtatttttgcacattttcttcctattata-ctctcattttaatc 36319527  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 783 - 861
Target Start/End: Original strand, 13254165 - 13254242
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    ||||||||| | |||||| |||||||||||||||||||||||||||| ||||||  | |||||||||||| ||||||||    
T  13254165 gaaaattaacatcaaaatagcgatgtgtatttttgcacattttcttcatattat-gctctcattttaatccatcaataa 13254242  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 783 - 840
Target Start/End: Original strand, 6295210 - 6295267
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattataccc 840  Q
    ||||||||| || ||||| ||||||||||||||||||||||||||| |||||||||||    
T  6295210 gaaaattaacactaaaatagcgatgtgtatttttgcacattttctttctattataccc 6295267  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 164
Target Start/End: Original strand, 15630161 - 15630235
Alignment:
Q  89 caaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaag 164  Q
    ||||||||||||||| |||||||||||||||||||   ||||||||||||| |||| |||| |||||||| |||||    
T  15630161 caaaaggttataagagaatatataataaaacctaatagactctaacttactaatat-aaaggcccaataatttaag 15630235  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 807 - 867
Target Start/End: Complemental strand, 2752235 - 2752176
Alignment:
Q  807 gtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataattttat 867  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||| | |||||| |||||    
T  2752235 gtgtatttttgtacattttcttcctattata-ccctcattttaatcgaccaataagtttat 2752176  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 807 - 854
Target Start/End: Original strand, 40518628 - 40518674
Alignment:
Q  807 gtgtatttttgcacattttcttcctattatacccctcattttaatcta 854  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||    
T  40518628 gtgtatttttgcacattttcttcctattata-ccctcaatttaatcta 40518674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 783 - 837
Target Start/End: Complemental strand, 39387136 - 39387082
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattata 837  Q
    |||||||| || |||||| |||||||||| ||||||| |||||||||||||||||    
T  39387136 gaaaattactatcaaaatagcgatgtgtacttttgcaaattttcttcctattata 39387082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 784 - 861
Target Start/End: Original strand, 11817513 - 11817589
Alignment:
Q  784 aaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    |||||||| |||||| | || ||| ||||||||||| ||||| ||||||||||| |||||||||||||| | ||||||    
T  11817513 aaaattaacaccaaattagcaatgcgtatttttgcagatttttttcctattata-ccctcattttaatccaccaataa 11817589  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 809 - 852
Target Start/End: Original strand, 11795508 - 11795550
Alignment:
Q  809 gtatttttgcacattttcttcctattatacccctcattttaatc 852  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||    
T  11795508 gtatttttgcacattttcttcatattata-ccctcattttaatc 11795550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 809 - 840
Target Start/End: Original strand, 23699827 - 23699858
Alignment:
Q  809 gtatttttgcacattttcttcctattataccc 840  Q
    ||||||||||||||||||||||||||||||||    
T  23699827 gtatttttgcacattttcttcctattataccc 23699858  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 807 - 837
Target Start/End: Original strand, 23698886 - 23698916
Alignment:
Q  807 gtgtatttttgcacattttcttcctattata 837  Q
    |||||||||||||||||||||||||||||||    
T  23698886 gtgtatttttgcacattttcttcctattata 23698916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 28665079 - 28665018
Alignment:
Q  85 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaa 147  Q
    ||||||||| ||||| ||| |||||||||| |||||||| | ||||||||||||| |||||||    
T  28665079 attacaaaatgttatgagagaatatataat-aaacctaatggactctaacttactaatataaa 28665018  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 189
Target Start/End: Original strand, 2073375 - 2073482
Alignment:
Q  84 cattacaaaaggttataagaaaatatataa--taaaacctaacgcact-ctaacttactgatataaaagacccaataacttaagtctaatattttcttat 180  Q
    |||||||||| ||||||||| ||||||||   |||||||||| | ||| |||||||||| |||| || |||  |||| |||||| | |||||||| ||||    
T  2073375 cattacaaaaagttataagagaatatatatactaaaacctaatggactgctaacttactaatattaaggact-aatagcttaagcccaatattttattat 2073473  T
Q  181 ctaacaact 189  Q
    |||||||||    
T  2073474 ctaacaact 2073482  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 807 - 840
Target Start/End: Complemental strand, 30281198 - 30281165
Alignment:
Q  807 gtgtatttttgcacattttcttcctattataccc 840  Q
    ||||||||||||| ||||||||||||||||||||    
T  30281198 gtgtatttttgcatattttcttcctattataccc 30281165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 807 - 840
Target Start/End: Complemental strand, 52415730 - 52415697
Alignment:
Q  807 gtgtatttttgcacattttcttcctattataccc 840  Q
    |||||||||| |||||||||||||||||||||||    
T  52415730 gtgtatttttacacattttcttcctattataccc 52415697  T

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Target: scaffold0005 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 785 - 937
Target Start/End: Complemental strand, 257386 - 257236
Alignment:
Q  785 aaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataattttatttatttatttggcatac 884  Q
    ||||||| || ||||| ||||||||||||||| |||||||||||||||||||| ||||||| |||||| |||||||| ||    ||||| ||| ||| ||    
T  257386 aaattaacacgaaaatagcgatgtgtatttttacacattttcttcctattata-ccctcatattaatccatcaataaatt--cctattt-ttttgcacac 257291  T
Q  885 actttatcttttc-ataaattt-atatgttatcattctctagtaccaaacaattg 937  Q
    ||||||||||||| |||||||| |||||||||| |||||| | | ||||||||||    
T  257290 actttatcttttcaataaatttaatatgttatccttctctcgaaacaaacaattg 257236  T

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Target: chr6 (Bit Score: 49; Significance: 2e-18; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 784 - 938
Target Start/End: Complemental strand, 8049961 - 8049807
Alignment:
Q  784 aaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataattttatttatttatttggcata 883  Q
    |||||||| |||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| ||| | ||||||  || ||  ||| ||| ||| |    
T  8049961 aaaattaacaccaaaatagcgatgtgtgtttttgcacattttcttcctattata-ccctcattttgatccaccaataa-attcttatttttttttgcaca 8049864  T
Q  884 cactttatcttttc-ataaattt-atatgttatcattctctagtaccaaacaattgt 938  Q
    |||||||| ||| | |||||||| |||||||||| ||||||  || |||||||||||    
T  8049863 cactttatatttccaataaatttaatatgttatctttctctcataacaaacaattgt 8049807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 22868563 - 22868489
Alignment:
Q  83 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataa 158  Q
    ||||||||||| ||||||||| ||||||||||||||||||| | ||||||||||||| ||||||||| ||||||||    
T  22868563 acattacaaaaagttataagagaatatataataaaacctaatggactctaacttactaatataaaag-cccaataa 22868489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 783 - 861
Target Start/End: Original strand, 14093228 - 14093305
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    |||| |||| |||||| | || ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  14093228 gaaagttaacaccaaattagcaatgtgtatttttgcacattttcttcctattata-ccctcattttaatccatcaataa 14093305  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 9290663 - 9290727
Alignment:
Q  83 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaa 147  Q
    ||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| | |||||||    
T  9290663 acattacaaaaggttataagagaatatataataaaacctaatggactctaacttattaatataaa 9290727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 186
Target Start/End: Complemental strand, 18984598 - 18984497
Alignment:
Q  84 cattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatcta 183  Q
    |||||| ||||||||||||| ||||||||||||||| ||| | ||||||||||||| |||| |||| ||||||||  |||| | |||||||| |||| ||    
T  18984598 cattactaaaggttataagagaatatataataaaacataatgtactctaacttactaatat-aaaggcccaataatctaagcccaatattttattattta 18984500  T
Q  184 aca 186  Q
    |||    
T  18984499 aca 18984497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 186
Target Start/End: Complemental strand, 10741871 - 10741772
Alignment:
Q  85 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatctaa 184  Q
    ||||||||| ||||| ||| ||||||||||||| | ||| | |||||||||| || ||||||| |||||||||||||||| | |||||||| ||||||||    
T  10741871 attacaaaatgttatgagagaatatataataaatc-taatggactctaactttctaatataaa-gacccaataacttaagcccaatattttattatctaa 10741774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 18792843 - 18792914
Alignment:
Q  74 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatata 145  Q
    ||||| || ||||||||||||||||||||| |||||| |||||||| ||| ||||| ||||||||| |||||    
T  18792843 aatagtttaacattacaaaaggttataagagaatatacaataaaacttaatgcactttaacttactaatata 18792914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 187
Target Start/End: Complemental strand, 21862769 - 21862688
Alignment:
Q  105 aatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatctaacaa 187  Q
    ||||||||||||||||||| |||||||||||| || |||| |||||||||||| ||||||   |||| ||| |||||||||||    
T  21862769 aatatataataaaacctaatgcactctaacttgctaatat-aaagacccaatagcttaagctcaatactttattatctaacaa 21862688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 185
Target Start/End: Original strand, 33423986 - 33424087
Alignment:
Q  83 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatct 182  Q
    |||||||||| ||||||  || ||||||||||||||||||| | ||| ||||||||| |||| |||||| ||||||||||||   |||| ||| ||||||    
T  33423986 acattacaaagggttatgggagaatatataataaaacctaatgaactttaacttactaatat-aaagacgcaataacttaagctcaatactttattatct 33424084  T
Q  183 aac 185  Q
    |||    
T  33424085 aac 33424087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 784 - 861
Target Start/End: Complemental strand, 25057165 - 25057089
Alignment:
Q  784 aaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    |||||||| | ||||||  ||||| ||||||||  ||||||||||||||||||| || ||| ||||||| ||||||||    
T  25057165 aaaattaacatcaaaataacgatgggtatttttatacattttcttcctattata-ccttcaatttaatccatcaataa 25057089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 807 - 840
Target Start/End: Original strand, 26252051 - 26252084
Alignment:
Q  807 gtgtatttttgcacattttcttcctattataccc 840  Q
    ||||||||||| ||||||||||||||||||||||    
T  26252051 gtgtatttttgtacattttcttcctattataccc 26252084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 2e-18; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 783 - 938
Target Start/End: Complemental strand, 45647195 - 45647043
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataattttatttatttatttggcat 882  Q
    ||||||||| |  ||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||  |||||||    ||| || | ||| |||     
T  45647195 gaaaattaacataaaaatagcgatgtgtattcttgcacattttcttcctattata-ccctcattttaatccgtcaataa----attcatattttttgcac 45647101  T
Q  883 acactttatcttttc-ataaattt-atatgttatcattctctagtaccaaacaattgt 938  Q
    ||||||||||||| | |||||||| |||||||||| ||||||  || |||||||||||    
T  45647100 acactttatctttccaataaatttaatatgttatctttctctcataacaaacaattgt 45647043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 83 - 186
Target Start/End: Complemental strand, 42531391 - 42531289
Alignment:
Q  83 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatct 182  Q
    ||||||||||||||||||||| ||||||||||||||||||| | ||| ||||||||| |||||||||  ||||||||| ||| | |||  ||| ||||||    
T  42531391 acattacaaaaggttataagagaatatataataaaacctaatgaactttaacttactaatataaaag-tccaataactcaagcccaatcctttattatct 42531293  T
Q  183 aaca 186  Q
    ||||    
T  42531292 aaca 42531289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 784 - 938
Target Start/End: Complemental strand, 2094369 - 2094217
Alignment:
Q  784 aaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataattttatttatttatttggcata 883  Q
    |||||||| |||||||| | |||||||||||||||||||||||||||||||||| | |||  ||||||| | |||||| ||  | ||||| ||||| | |    
T  2094369 aaaattaacaccaaaatagtgatgtgtatttttgcacattttcttcctattata-ctctcggtttaatccaccaataaatt--tctatttttttgg-aca 2094274  T
Q  884 cactttatcttttcataaa--tttatatgttatcattctctagtaccaaacaattgt 938  Q
    ||||||||||||||| |||  || |||||||||| |||||| ||| |||| ||||||    
T  2094273 cactttatcttttcaaaaaatttaatatgttatctttctctcgtaacaaataattgt 2094217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 783 - 861
Target Start/End: Complemental strand, 2599660 - 2599583
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    ||||||||| || ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| | ||||||    
T  2599660 gaaaattaacactaaaatagcgatgtgtatttttgcacattttattcctattata-ccctcattttaatccaccaataa 2599583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 783 - 861
Target Start/End: Original strand, 16237009 - 16237086
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    ||||||||| || ||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||||    
T  16237009 gaaaattaacacaaaaatagcgatgtgtattttttcacattttcttcctattata-ccctcattttaatccataaataa 16237086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 186
Target Start/End: Original strand, 814385 - 814498
Alignment:
Q  74 aatagattgacattacaaaaggttataagaaaatatataata--aaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaata 171  Q
    ||||| || ||||||||| ||||||||||| ||||||||  |  |||||||| | ||||||||||||| ||||||| | |||||||||||||||| ||||    
T  814385 aatagcttaacattacaagaggttataagagaatatatataacgaaacctaatggactctaacttactaatataaatg-cccaataacttaagtccaata 814483  T
Q  172 ttttcttatctaaca 186  Q
     ||| ||||||||||    
T  814484 ctttattatctaaca 814498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 186
Target Start/End: Original strand, 46691458 - 46691559
Alignment:
Q  83 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatct 182  Q
    ||||||||||||||||||||| |||||||||||||| |||| | |||||||||||||  ||| ||||  ||||||||||||||  |||| ||| ||||||    
T  46691458 acattacaaaaggttataagagaatatataataaaa-ctaatggactctaacttactagtat-aaaggtccaataacttaagttcaatactttattatct 46691555  T
Q  183 aaca 186  Q
    ||||    
T  46691556 aaca 46691559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 186
Target Start/End: Complemental strand, 50297562 - 50297460
Alignment:
Q  83 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatct 182  Q
    ||||||||||||||||||||  || |||||||||||| ||| | ||||||||||||| |||| |||||| ||||||||||||   |||| ||| ||||||    
T  50297562 acattacaaaaggttataagtgaacatataataaaacataatgaactctaacttactaatat-aaagactcaataacttaagcacaatactttattatct 50297464  T
Q  183 aaca 186  Q
    ||||    
T  50297463 aaca 50297460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 783 - 837
Target Start/End: Complemental strand, 5494222 - 5494168
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattata 837  Q
    |||||||||||| ||||| | ||||||||||||||||||||||||||||||||||    
T  5494222 gaaaattaatacaaaaatagtgatgtgtatttttgcacattttcttcctattata 5494168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 189
Target Start/End: Complemental strand, 814351 - 814257
Alignment:
Q  93 aggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatctaacaact 189  Q
    ||||||||||| |||||| ||  |||||||| | ||||||||||||| ||||||| | |||||||||||||||| |||| ||| |||||||||||||    
T  814351 aggttataagagaatata-aacgaaacctaatggactctaacttactaatataaatg-cccaataacttaagtccaatactttattatctaacaact 814257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 50294756 - 50294694
Alignment:
Q  85 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaa 147  Q
    ||||||||| ||||||||| ||||||||||||||||||| | ||||||||||| | |||||||    
T  50294756 attacaaaatgttataagataatatataataaaacctaatggactctaacttattaatataaa 50294694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 187
Target Start/End: Complemental strand, 42530683 - 42530589
Alignment:
Q  91 aaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatctaacaa 187  Q
    ||||||||||||| ||||||||||||||||||| | ||| ||| ||||| |||||||||   || ||||| ||||| |||| ||| |||||||||||    
T  42530683 aaaggttataagagaatatataataaaacctaatgaactttaatttactaatataaaag--tcactaactcaagtccaatactttattatctaacaa 42530589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 16463079 - 16463005
Alignment:
Q  72 aaaatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaa 147  Q
    |||||||||| ||||||||||||  ||| ||| |||||||||| |||||||| | ||||||||||||| |||||||    
T  16463079 aaaatagattaacattacaaaagaatattagagaatatataat-aaacctaatggactctaacttactaatataaa 16463005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 787 - 849
Target Start/End: Complemental strand, 297048 - 296987
Alignment:
Q  787 attaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcatttta 849  Q
    ||||| |||||||| |||| ||||||||||| |||||||||||||| |||| |||||||||||    
T  297048 attaacaccaaaatagcgaagtgtatttttgtacattttcttcctactata-ccctcatttta 296987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 783 - 861
Target Start/End: Complemental strand, 27818041 - 27817964
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    ||||||||| || |||||  ||||||| ||||||||||||||| ||||||||||| |||| ||||||||| | ||||||    
T  27818041 gaaaattaacacaaaaataacgatgtgcatttttgcacattttattcctattata-cccttattttaatccaccaataa 27817964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 180
Target Start/End: Complemental strand, 30057196 - 30057091
Alignment:
Q  74 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatatt 173  Q
    ||||| || |||||||||||| |||||||| ||||||||| |||| |||| | |||||||||||   ||||||| | ||||||||||| ||| ||||| |    
T  30057196 aatagcttaacattacaaaagattataagagaatatataacaaaatctaatggactctaacttatgaatataaatg-cccaataacttgagtttaatact 30057098  T
Q  174 ttcttat 180  Q
    || ||||    
T  30057097 ttattat 30057091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 787 - 852
Target Start/End: Complemental strand, 9589358 - 9589294
Alignment:
Q  787 attaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatc 852  Q
    ||||| |||||||| || | |||||||||||||| ||||||||||||| || ||||||||||||||    
T  9589358 attaacaccaaaatagcaaagtgtatttttgcactttttcttcctattgta-ccctcattttaatc 9589294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 787 - 840
Target Start/End: Complemental strand, 12568977 - 12568924
Alignment:
Q  787 attaataccaaaattgcgatgtgtatttttgcacattttcttcctattataccc 840  Q
    ||||| |||||||| | || ||||||||||||||||||||||| ||||||||||    
T  12568977 attaacaccaaaatagtgaagtgtatttttgcacattttcttcttattataccc 12568924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 787 - 840
Target Start/End: Complemental strand, 13545441 - 13545388
Alignment:
Q  787 attaataccaaaattgcgatgtgtatttttgcacattttcttcctattataccc 840  Q
    ||||| |||||||| | || ||||||||||||||||||||||| ||||||||||    
T  13545441 attaacaccaaaatagtgaagtgtatttttgcacattttcttcttattataccc 13545388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 783 - 861
Target Start/End: Complemental strand, 34669281 - 34669203
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttttgcaca-ttttcttcctattatacccctcattttaatctatcaataa 861  Q
    ||||||||| |  ||||| |||||||||||||||||||| |||| || |||||||| | |||||||||||| ||||||||    
T  34669281 gaaaattaacattaaaatagcgatgtgtatttttgcacatttttttttctattata-ctctcattttaatccatcaataa 34669203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 807 - 838
Target Start/End: Original strand, 38750498 - 38750529
Alignment:
Q  807 gtgtatttttgcacattttcttcctattatac 838  Q
    ||||||||||||||||||||||||||||||||    
T  38750498 gtgtatttttgcacattttcttcctattatac 38750529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 18088145 - 18088206
Alignment:
Q  85 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaa 147  Q
    ||||||||| ||||| ||| |||||||||| |||||||| | ||||||||||||| |||||||    
T  18088145 attacaaaatgttatgagagaatatataat-aaacctaatggactctaacttactaatataaa 18088206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 783 - 852
Target Start/End: Original strand, 37030387 - 37030456
Alignment:
Q  783 gaaaattaataccaaaattgcgatgtgtatttt-tgcacattttcttcctattatacccctcattttaatc 852  Q
    ||||||||| || |||||  ||| ||||||||| ||||||||||||||||| |||| ||||||||||||||    
T  37030387 gaaaattaacacaaaaatcacgaagtgtattttttgcacattttcttcctagtata-ccctcattttaatc 37030456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1327 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: scaffold1327
Description:

Target: scaffold1327; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 784 - 938
Target Start/End: Complemental strand, 1375 - 1224
Alignment:
Q  784 aaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataattttatttatttatttggcata 883  Q
    |||||||| |||| ||| || ||||||||||||| ||||||||||||||||||  | |||||||||||| | |||||| ||  ||||||| |||| || |    
T  1375 aaaattaacaccagaatagcaatgtgtatttttgtacattttcttcctattat-gctctcattttaatc-accaataaatt--tttattt-tttgacaca 1281  T
Q  884 cactttatcttttc-ataaattt-atatgttatcattctctagtaccaaacaattgt 938  Q
    |||||||||||||| |||||||| |||||||||| ||||||  || |||||||||||    
T  1280 cactttatcttttcaataaatttaatatgttatctttctctcttaacaaacaattgt 1224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 43615545 - 43615458
Alignment:
Q  98 ataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatctaaca 186  Q
    ||||||||||||||||||||| |||| | ||||||||||||| ||||||||| | |||||||| ||||  |||||||| ||||||||||    
T  43615545 ataagaaaatatataataaaatctaatggactctaacttactaatataaaag-ctcaataactaaagttcaatattttattatctaaca 43615458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 812 - 938
Target Start/End: Original strand, 7694941 - 7695065
Alignment:
Q  812 tttttgcacattttcttcctattatacccctcattttaatctatcaataattttatttatttatttggcatacactttatcttttc-ataaattt-atat 909  Q
    ||||||||||||||||||||||||||  |||||||||||||||  ||||| ||    ||||| ||| ||| ||||||||||||||| |||||||| ||||    
T  7694941 tttttgcacattttcttcctattata-tcctcattttaatctacaaataaatt--cctattt-ttttgcacacactttatcttttcaataaatttaatat 7695036  T
Q  910 gttatcattctctagtaccaaacaattgt 938  Q
    |||||| |||||| ||| |||||||||||    
T  7695037 gttatctttctcttgtaacaaacaattgt 7695065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 807 - 914
Target Start/End: Original strand, 29315278 - 29315383
Alignment:
Q  807 gtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataattttatttatttatttggcatacactttatcttttc-ataaattt 905  Q
    |||||| |||||||||||||||||||||||| |||||| ||||||| | |||||  | ||||||||| ||||||| | ||||||||||||| ||||||||    
T  29315278 gtgtatatttgcacattttcttcctattata-ccctcaatttaatccaccaata--tatatttattt-tttggcacatactttatcttttcaataaattt 29315373  T
Q  906 -atatgttat 914  Q
     |||||||||    
T  29315374 aatatgttat 29315383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 795 - 861
Target Start/End: Complemental strand, 32234279 - 32234214
Alignment:
Q  795 caaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    |||||| |||||||||||||||| ||||||||||||||||||| ||||||||| |||| | ||||||    
T  32234279 caaaatagcgatgtgtatttttgtacattttcttcctattata-ccctcatttcaatccaccaataa 32234214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 784 - 861
Target Start/End: Complemental strand, 5871442 - 5871366
Alignment:
Q  784 aaaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    |||||||||| |||| | ||||||| ||||||| |||||||||||||||||||| || ||||||||||| | ||||||    
T  5871442 aaaattaatatcaaattagcgatgtatatttttacacattttcttcctattata-ccttcattttaatccaccaataa 5871366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 20241126 - 20241062
Alignment:
Q  84 cattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaa 148  Q
    |||||| ||| ||||||||| |||||||||||||| |||||| |||||||||||||  |||||||    
T  20241126 cattactaaatgttataagagaatatataataaaatctaacggactctaacttactactataaaa 20241062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 20251941 - 20252005
Alignment:
Q  84 cattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaa 148  Q
    |||||| ||| ||||||||| |||||||||||||| |||||| |||||||||||||  |||||||    
T  20251941 cattactaaatgttataagagaatatataataaaatctaacggactctaacttactactataaaa 20252005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 33199512 - 33199431
Alignment:
Q  83 acattacaaaaggttataagaaaatatataataaaacctaa-cgcactctaacttactgatataaaagacccaataacttaag 164  Q
    |||||||||||| ||||||| ||||||||||||||||||||    ||||| ||||||| ||||||||| | ||||||||||||    
T  33199512 acattacaaaagattataaggaaatatataataaaacctaattatactctgacttactaatataaaag-ctcaataacttaag 33199431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 807 - 840
Target Start/End: Complemental strand, 36683495 - 36683462
Alignment:
Q  807 gtgtatttttgcacattttcttcctattataccc 840  Q
    ||||||||||||||||||||||||||||||||||    
T  36683495 gtgtatttttgcacattttcttcctattataccc 36683462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 785 - 852
Target Start/End: Complemental strand, 38402136 - 38402071
Alignment:
Q  785 aaattaataccaaaattgcgatgtgtatttttgcacattttcttcctattatacccctcattttaatc 852  Q
    ||||||| | |||||| || ||||||||||||||||| |||||| |||||||| ||||||||||||||    
T  38402136 aaattaacatcaaaatagcaatgtgtatttttgcaca-tttctttctattata-ccctcattttaatc 38402071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 802 - 852
Target Start/End: Complemental strand, 14897157 - 14897108
Alignment:
Q  802 gcgatgtgtatttttgcacattttcttcctattatacccctcattttaatc 852  Q
    |||| |||||||||||||||||||||| |||||||  ||||||||||||||    
T  14897157 gcgaagtgtatttttgcacattttctttctattat-gccctcattttaatc 14897108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 807 - 861
Target Start/End: Complemental strand, 34146849 - 34146796
Alignment:
Q  807 gtgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    |||||||||| ||||||||||| |||||||| |||||||||||||| | ||||||    
T  34146849 gtgtatttttacacattttctttctattata-ccctcattttaatccaccaataa 34146796  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 796 - 852
Target Start/End: Original strand, 3443350 - 3443406
Alignment:
Q  796 aaaattgcgatgtgtatttttgcaca-ttttcttcctattatacccctcattttaatc 852  Q
    ||||| |||| ||||||||||||||| |||| ||||||||||| ||||||||||||||    
T  3443350 aaaatagcgaagtgtatttttgcacactttttttcctattata-ccctcattttaatc 3443406  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 807 - 840
Target Start/End: Original strand, 35970119 - 35970152
Alignment:
Q  807 gtgtatttttgcacattttcttcctattataccc 840  Q
    ||||||||||||||||||||||||||| ||||||    
T  35970119 gtgtatttttgcacattttcttcctatcataccc 35970152  T

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Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 187
Target Start/End: Original strand, 406256 - 406357
Alignment:
Q  85 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatctaa 184  Q
    |||| |||||||||||| | ||||||||||||||| ||| | |||||||||| || |||| |||| |||||||||||||  |||||| ||| ||||||||    
T  406256 attagaaaaggttataatagaatatataataaaacttaaaggactctaacttgctaatat-aaaggcccaataacttaaacctaatactttattatctaa 406354  T
Q  185 caa 187  Q
    |||    
T  406355 caa 406357  T

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Target: scaffold0511 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 11298 - 11227
Alignment:
Q  74 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatata 145  Q
    ||||| || ||||||||||||||||||||| |||||| |||||||| ||| ||||| ||||||||| |||||    
T  11298 aatagtttaacattacaaaaggttataagagaatatacaataaaacttaatgcactttaacttactaatata 11227  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 808 - 861
Target Start/End: Complemental strand, 184639 - 184587
Alignment:
Q  808 tgtatttttgcacattttcttcctattatacccctcattttaatctatcaataa 861  Q
    |||||||||||||||||| || |||||||| |||||||||||||||| ||||||    
T  184639 tgtatttttgcacattttttttctattata-ccctcattttaatctaccaataa 184587  T

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Target: scaffold0841 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0841
Description:

Target: scaffold0841; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 807 - 860
Target Start/End: Original strand, 3872 - 3924
Alignment:
Q  807 gtgtatttttgcacattttcttcctattatacccctcattttaatctatcaata 860  Q
    |||||||||| ||  |||||||||||||||| |||||||||||||||| |||||    
T  3872 gtgtattttttcagtttttcttcctattata-ccctcattttaatctaacaata 3924  T

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