View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4876-Insertion-5 (Length: 912)
Name: NF4876-Insertion-5
Description: NF4876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4876-Insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 567; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 31 - 672
Target Start/End: Complemental strand, 3592678 - 3592036
Alignment:
| Q |
31 |
tttttatatcaaagcaatggtttaaaacctgaactggacatcgaacaggtgagacttctagatcatgattcaaccgtcttgaaccgcccgtgatcgaact |
130 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3592678 |
tttttatatcaaagcaatggtttaaaacctgaactggacatcgaacaggtgagacttctagatcatgattcaaccgtgttgaaccgcccgtgatcgaact |
3592579 |
T |
|
| Q |
131 |
gccaaaataaccaaaccacaataaaagtcggttgaactgtccggttcgnnnnnnnn-aaggtttgatatcagaatcatcccaaggaacatttagatcagt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592578 |
gccaaaataaccaaaccacaataaaagtcggttgaactgtccggttcgtttttttttaaggtttgatatcagaatcatcccaaggaacatttagatcagt |
3592479 |
T |
|
| Q |
230 |
tgagaccaaagaatcaatatcctcccaactccaatagtttgacatatccattccactacttgttgcaggtatctcccatggctgtgtaatagtgccactc |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592478 |
tgagaccaaagaatcaatatcctcccaactccaatagtttgacatatccattccactacttgttgcaggtatctcccatggctgtgtaatagtgccacta |
3592379 |
T |
|
| Q |
330 |
ccactagtgcttggcattgcactgttgttaatagttgactcctccattattttaaactcttcatcaccatagttatatccattagttgaccttaaagtgc |
429 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3592378 |
ccactagtgcttggcattgcactgttgttaatagttgactcctccattattttaaactcttcatcaccatagttatatccattatttgaccttaaagtgc |
3592279 |
T |
|
| Q |
430 |
ttgagtttgagaatgggaatataaagctttggttttgatgaaagggcatagatgaactcagaaacatgccattaccaataccaaactcttcattattacc |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592278 |
ttgagtttgagaatgggaatataaagctttggttttgatgaaagggcatagatgaactcagaaacatgccattaccaataccaaactcttcattattacc |
3592179 |
T |
|
| Q |
530 |
ttctgattgatctttggtactgattagaatctgtggtggcaaaaaagatggtggatgaataagagattcatgcatagaagaaggtgtgnnnnnnnnattc |
629 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3592178 |
ttctgattgatctttggtactgattagattctgtggtggcaaaaaagatggtggatgaataagagattcatgcatagaagaaggtgtgttttttttattc |
3592079 |
T |
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| Q |
630 |
agcctattggcatttgaggtggtggtggaggaggtgctaatag |
672 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3592078 |
agcctattggcatttgaggtggtggtgaaggaggtgctaatag |
3592036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 657 - 912
Target Start/End: Complemental strand, 3592027 - 3591760
Alignment:
| Q |
657 |
gaggaggtgctaatagaggttgatatcttgactctcttattcttcctaacaccaccaacaggaacattccttagagtaccacctttagtccaatgtctct |
756 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592027 |
gaggtggtgctaatagaggttgatatcttgactctcttattcttcctaacaccaccaacaggaacattccttagagtaccacctttagtccaatgtctct |
3591928 |
T |
|
| Q |
757 |
tacaagctctgcagaaatggcgaggttgagacttgttatagttgttgtagtaacaaaatttggtatttgtagagtcacatcttggacaattcactgcctc |
856 |
Q |
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| T |
3591927 |
tacaagccctgcagaaatggcgaggttgagacttgttatagttgttgtagtaacaaaatttggtatttgtagagtcacatcttggacaattcactgcctc |
3591828 |
T |
|
| Q |
857 |
ta------------gttgctgttgtttcctcatgggaagagtctttggaagttccaagttttgatctt |
912 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3591827 |
tagttggtgattttgttgctgttgtttcctcatgggaagagtctttggaagttccaagttttgatctt |
3591760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 780 - 823
Target Start/End: Complemental strand, 41335355 - 41335312
Alignment:
| Q |
780 |
ggttgagacttgttatagttgttgtagtaacaaaatttggtatt |
823 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
41335355 |
ggttgagacaagttatagttgttgtagtaacaaaattttgtatt |
41335312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 8e-42; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 690 - 849
Target Start/End: Complemental strand, 35721859 - 35721700
Alignment:
| Q |
690 |
ctcttattcttcctaacaccaccaacaggaacattccttagagtaccacctttagtccaatgtctcttacaagctctgcagaaatggcgaggttgagact |
789 |
Q |
| |
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||||||||||| || ||||||||||||||||||| | |||||| |||||||||||||| ||||| ||||||||||| ||||| || ||||||||||||| |
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| T |
35721859 |
ctcttattctttctgccaccaccaacaggaacattgcgtagagttccacctttagtccagtgtcttttacaagctctacagaagtgacgaggttgagact |
35721760 |
T |
|
| Q |
790 |
tgttatagttgttgtagtaacaaaatttggtatttgtagagtcacatcttggacaattca |
849 |
Q |
| |
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|||| || ||||||||||||||||| || || ||||| || ||||||||||||||||||| |
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| T |
35721759 |
tgttgtaattgttgtagtaacaaaactttgtgtttgttgaatcacatcttggacaattca |
35721700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 708 - 844
Target Start/End: Original strand, 22483403 - 22483539
Alignment:
| Q |
708 |
ccaccaacaggaacattccttagagtaccacctttagtccaatgtctcttacaagctctgcagaaatggcgaggttgagacttgttatagttgttgtagt |
807 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||||||| | ||||| || | || |||||||||| |
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| T |
22483403 |
ccaccaacaggaacattccttagtgtaccacctttagtccaatatctcctacaagacttgcagaaatatcttggttgtgaaagactgtaattgttgtagt |
22483502 |
T |
|
| Q |
808 |
aacaaaatttggtatttgtagagtcacatcttggaca |
844 |
Q |
| |
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||||||||||||| || | ||||||||||||||||| |
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| T |
22483503 |
aacaaaatttggtgttgtttgagtcacatcttggaca |
22483539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 294
Target Start/End: Complemental strand, 35722446 - 35722336
Alignment:
| Q |
187 |
aaggtttgatatcagaatcatcccaa---ggaacatttagatcagttgagaccaaagaatcaatatcctcccaactccaatagtttgacatatccattcc |
283 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||||| ||||| |||||||| || |||||| ||||||| ||||| | ||||| || |
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| T |
35722446 |
aaggtttgatatcagaatcatcccaataaggattctttagatcagttgaaaccaatgaatcaatgtcttcccaattccaatactttgaactttccatgcc |
35722347 |
T |
|
| Q |
284 |
actacttgttg |
294 |
Q |
| |
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|| |||||||| |
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| T |
35722346 |
accacttgttg |
35722336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 766 - 844
Target Start/End: Complemental strand, 33823890 - 33823812
Alignment:
| Q |
766 |
tgcagaaatggcgaggttgagacttgttatagttgttgtagtaacaaaatttggtatttgtagagtcacatcttggaca |
844 |
Q |
| |
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|||||||||||||||| |||| ||||||||||||||||||||||||||| || |||| ||||| ||||||||||| |
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| T |
33823890 |
tgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgtttgatgagtcgcatcttggaca |
33823812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 795 - 844
Target Start/End: Complemental strand, 28437359 - 28437310
Alignment:
| Q |
795 |
tagttgttgtagtaacaaaatttggtatttgtagagtcacatcttggaca |
844 |
Q |
| |
|
||||||||||||||||| ||||| || |||| ||| |||||||||||||| |
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|
| T |
28437359 |
tagttgttgtagtaacagaattttgtgtttggagaatcacatcttggaca |
28437310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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