View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4876-Insertion-6 (Length: 897)
Name: NF4876-Insertion-6
Description: NF4876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4876-Insertion-6 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 836; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 836; E-Value: 0
Query Start/End: Original strand, 11 - 897
Target Start/End: Original strand, 1453386 - 1454266
Alignment:
| Q |
11 |
atggcttaacattttagaaatgtgtcaggcgcatatgtagtgaaaacaatttttagaatttttaagaatttttagattatataatagtgctgaaagtgtt |
110 |
Q |
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| T |
1453386 |
atggcttgacattttagaaatgtgtcaggcgcatatgcagtgaaaacaatttttagaatttttaagaatttttagattatataatagtgctgaaagtgtt |
1453485 |
T |
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| Q |
111 |
agtaatgttgtcttgtgtgacaagatacttgtcgcttttgatgagctaattatgttgttgaaggagccactgattattgacagaaaactctattgcacgt |
210 |
Q |
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| T |
1453486 |
agtaatgttgtcttgtgtgacaagatacttgtcgcttttgatgagctaattatgttgttgaaggagccactgattattgacagaaaactctattgca--- |
1453582 |
T |
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| Q |
211 |
tcatgccatgtgtatagaaacataaaattaaaacctagctaagagacagaatttgcatatcatcgttataaaacctatatatataaatagtagatcatta |
310 |
Q |
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| T |
1453583 |
---tgccatgtgtatagaaacataaaattaaaacctagctaagagacagaatttgcatatcatcgttataaaacctatatatataaatagtagatcatta |
1453679 |
T |
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| Q |
311 |
taaaactcgaaatctagacctccacacgacgtcgtttctcctctgtcactcacagaggaaacaacctccactaagagggggatcattgttattaagatat |
410 |
Q |
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| T |
1453680 |
taaaactcgaaatctagacctccacacgacgtcgtttctcctctgtcactcacagaggaaacaacctccactaagagggggatcattgttattaagatat |
1453779 |
T |
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| Q |
411 |
tatggactaaattgataatcgattttctaatactttatggactaaattgacaaatatcacctactttaggtatcggttattatatttatatggttagaga |
510 |
Q |
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| T |
1453780 |
tatggaccaaattgataatcgattttctaatactttatggactaaattgacaaatatcacctactttaggtatcggttattttatttatatggttagaga |
1453879 |
T |
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| Q |
511 |
ctaaattggtttaagaatgataattttaagaacaaaatctaagaatgcttcctttagctttgatgcatcagttcttactggttgcaggaatttggtaaac |
610 |
Q |
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| T |
1453880 |
ctaaattggtttaagaatgataattttaagaacaaaatctaagaatgcttcctttagctttgatgcatcagttcttactggttgcaggaatttggtaaac |
1453979 |
T |
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| Q |
611 |
caaatggtacaagtcaaccaaaaagtaaatttgacttgcaccaaaatattgcaaactgaagtacatgcataaaatttgttgctattctgtcttccttttc |
710 |
Q |
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| T |
1453980 |
caaatggtacaagtcaaccaaaaagtaaatttgacttgcaccaaaatattgcaaaccgaagtacatgcataatatttgttgctattctgtcttccttttc |
1454079 |
T |
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| Q |
711 |
tttttaaaatttaagtatttcattatttttaactatgaatgaaatgggtaaatgttatcggtggatcaaattaacagggtagatgaatagattttgtgtt |
810 |
Q |
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| T |
1454080 |
tttttaaaattgaagtatttcattatttttaactatgaatgaaatgggtaaatgttatcggtggatcaaattaacagggtagatgaatagattttgtgtt |
1454179 |
T |
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| Q |
811 |
tttagctttccttttacaatagaataaccatatcataatgtcatgaagttttttggttttgtacaattagaagtataattgcttgag |
897 |
Q |
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| T |
1454180 |
tttagctttccttttacaatagaataaccatatcataatgtcatgaagttttttggttttgtacaattagaagtataattgcttgag |
1454266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 382 - 634
Target Start/End: Original strand, 1452429 - 1452679
Alignment:
| Q |
382 |
taagagggggatcattgttattaagatattatggactaaattgata-atcgattttctaatactttatggactaaattgacaaatatcacctactttagg |
480 |
Q |
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| T |
1452429 |
taagaggggaaccattgttattaatatattatggactaaattgatcgatgtattttctaatactttatggactaaattgatgaatttctg-tactttaag |
1452527 |
T |
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| Q |
481 |
tatcggttattatatttatatggttagagactaaattggtttaagaatgataattttaagaacaaaatctaagaatgcttcctttagctttgatgcatca |
580 |
Q |
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| T |
1452528 |
tattagttattatatttatatggttcgagagtaaattaatttaagaacgataa-tttaagaactaaatttaagaatggttccatttgctttgatacctcg |
1452626 |
T |
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| Q |
581 |
gttcttactggttgcaggaatttggtaaaccaaatggtacaagtcaaccaaaaa |
634 |
Q |
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| T |
1452627 |
gtgc-tgctggttgcaggaaattgttaaaccaaatggtacaggccaacaaaaaa |
1452679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 179 - 330
Target Start/End: Original strand, 1454836 - 1454984
Alignment:
| Q |
179 |
actgattattgacagaaaactctattgcacgttcatgccatgtgtatagaaacataaaattaaaacctagctaagagacagaatttgcatatcatcgtta |
278 |
Q |
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| T |
1454836 |
actgtttattgatagaaaactcaagtacacattcatggcatgtgcatagaaacatcaaactaaaaccta----atagacagaatttgcatatcaacgtta |
1454931 |
T |
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| Q |
279 |
taaaa-cctatatatataaatagtagatcattataaaactcgaaatctagacc |
330 |
Q |
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| T |
1454932 |
aaaaaacctaaacatataaatagtagatcattataaaacttgaaatctagacc |
1454984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 1454546 - 1454627
Alignment:
| Q |
100 |
ctgaaagtgttagtaatgttgtcttgtgtgacaagatacttgtcgcttttgatgagctaattatgttgttgaaggagccact |
181 |
Q |
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| T |
1454546 |
ctgaaagtgtatgtaatgctttcttgtgtgacaagatactggttgcttttgatgaactaattatgttattgaaggagtcact |
1454627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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