View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4876-Insertion-8 (Length: 742)
Name: NF4876-Insertion-8
Description: NF4876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4876-Insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 419
Target Start/End: Complemental strand, 30463561 - 30463157
Alignment:
| Q |
8 |
tgttcaaataatggagtgtttggtgagtgaagaaattgtagcaatgatatgatttatgttgccatttttggaagtggtgccaagagagtatgtagagaag |
107 |
Q |
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| T |
30463561 |
tgttcaaataatggagagtttggtgagtgaagaaattgtagcaatgatatgatttatgttgccatttttggaagtggtgccaagagagtatgtagagaag |
30463462 |
T |
|
| Q |
108 |
gagatttgatgtcaaccacaattttgggggagtaaaaagagttggaaaaagattttgtttttatatgtttcgtttggaannnnnnnnnnnnnctacttgc |
207 |
Q |
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| T |
30463461 |
gagatttgatgtcaaccacaattttgggggagtaaaaagagttggaaaaagattttgtttttatgtgtttcgtttggaagtgtg--------ctacttgc |
30463370 |
T |
|
| Q |
208 |
agtgttggtctgtttccattgcatgattattcatgtttgtggatgaccnnnnnnngaattgtcaaagggttttttgaaaattcatcataagtgctctcgt |
307 |
Q |
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| T |
30463369 |
agtgttggtctgtttccattgcatgattattcatgtttgtggatgacctttttttgaattgtcaaagggttttttgaaaattcatcacaagtgctctcgt |
30463270 |
T |
|
| Q |
308 |
gagc-atctttttgtattatacatacatattattatttgtactgatgagcataaactaaatgaagagagtagagagaaatttaagtcacgtcagacaaag |
406 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30463269 |
gagctatctttttgtattatacatacatattattatttgtactgatgagcataaactaaatgaagagagtagagagaaatttaagtcacgtcagacaaag |
30463170 |
T |
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| Q |
407 |
tatctatgataat |
419 |
Q |
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| T |
30463169 |
tatctatgataat |
30463157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 444 - 742
Target Start/End: Complemental strand, 30463159 - 30462861
Alignment:
| Q |
444 |
aatgaaaggggatgaatgcgttatcannnnnnnnnaagaatatgcctcatcattttttgaaaggctggccagtatcaaaattgactgcacttacagaaaa |
543 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30463159 |
aatgaaaggggatgaatgcgttatcatttattttttagaatatgcctcatcattttttgaaaggcttgccagtatcaaaattgactgcacttacagaaaa |
30463060 |
T |
|
| Q |
544 |
ccgctataaatgtttatattgtttctatggcaataacataattggaagacaatttctacactccttactaaaagtggatattgttccgttgttgtcttgt |
643 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30463059 |
ccgctataaatgtttatattgtttctatggcaataacataattggaagacaatttctacactccttactaaaagtggatattgttccgttgttgtcttgt |
30462960 |
T |
|
| Q |
644 |
ccaccactaaatatgagaccaatgtcctatggacttagtttaatcggcagagacgttgcagtatgtaaaggcggcgtttagaccccaattcctcactta |
742 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30462959 |
ccaccactaaatatgagaccaatgtcctatggacttagtttaatcggtagagacgttgcagtatgtaaagacggcgtttagaccccaattcctcactta |
30462861 |
T |
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