View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4876_high_6 (Length: 237)
Name: NF4876_high_6
Description: NF4876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4876_high_6 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 3650399 - 3650193
Alignment:
| Q |
17 |
ttgttacatatgatatggttagtccaaaaacagcgtaagaaaatgattatacaagaagttttacta----tgtcagaattatcagatatagataaggctc |
112 |
Q |
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| T |
3650399 |
ttgttacatatcataatgttattccaaacacagcttaagaaaatggttata--agaagttttactaattgtgtcagaattatcagaaatagataaggctc |
3650302 |
T |
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| Q |
113 |
ttttaaagtgagcttaactataaaatgtgtaagtttagaatgtatctacagacgattttgtgggcattagggtaaacaatttgtgtataaattgtttcaa |
212 |
Q |
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| T |
3650301 |
ttttaaagtgagcttaactataaaatgtgtaagtttaaaatgcatctacagacgattttgtgggcattagggtaaacaatttgtgtataaattgtttcaa |
3650202 |
T |
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| Q |
213 |
caaaaaaga |
221 |
Q |
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||||||||| |
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| T |
3650201 |
caaaaaaga |
3650193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 3650874 - 3650797
Alignment:
| Q |
8 |
gttagggcgttgttacatatgatatggttagtccaaaaacagcgtaagaaaatgattatacaagaagttttactatgtca |
87 |
Q |
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| T |
3650874 |
gttagggcattgttacatatgataaggttattccaaacacagtgtaagaaaatgat--tacaagaagttttactatgtca |
3650797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 3706663 - 3706740
Alignment:
| Q |
8 |
gttagggcgttgttacatatgatatggttagtccaaaaacagcgtaagaaaatgattatacaagaagttttactatgtca |
87 |
Q |
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| T |
3706663 |
gttagggcattgttacatatgataaggttattccaaacacagtgtaagaaaatgat--tacaagaagttttactatgtca |
3706740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 3639476 - 3639418
Alignment:
| Q |
79 |
actatgtcagaattatcagatatagataaggctcttttaaagtgagcttaactataaaa |
137 |
Q |
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| T |
3639476 |
actatttcagaatcatcagaaatagataaggctcttttaatttgagcttgactataaaa |
3639418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 3645758 - 3645700
Alignment:
| Q |
79 |
actatgtcagaattatcagatatagataaggctcttttaaagtgagcttaactataaaa |
137 |
Q |
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| T |
3645758 |
actatgtgagaatcatcagaaatagataaggctcttttaatttgagcttgactataaaa |
3645700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 3637134 - 3637077
Alignment:
| Q |
79 |
actatgtcagaattatcagatatagataaggctcttttaaagtgagcttaactataaa |
136 |
Q |
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| T |
3637134 |
actatgtcagactcaccagaaatggacaaggctcttttaaagtgaacttaactataaa |
3637077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 3658809 - 3658765
Alignment:
| Q |
118 |
aagtgagcttaactataaaatgtgtaagtttagaatgtatctaca |
162 |
Q |
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| T |
3658809 |
aagtgagcttaactataaaatgcttaagttgaaaatgtatctaca |
3658765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 8951 - 9008
Alignment:
| Q |
79 |
actatgtcagaattatcagatatagataaggctcttttaaagtgagcttaactataaa |
136 |
Q |
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| T |
8951 |
actatgtcagactcaccagaaatggacaaggctcttttaaagtgaacttaactataaa |
9008 |
T |
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