View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4876_low_2 (Length: 551)
Name: NF4876_low_2
Description: NF4876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4876_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 19 - 538
Target Start/End: Complemental strand, 27361634 - 27361115
Alignment:
| Q |
19 |
gttgagagggttggcttatgtgggtagggttgatgaagcagttgagattttgatggatatgaagacaggaaatataggtgttgatgtttattcttatagt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27361634 |
gttgagagggttggcttatgtgggtagggttgatgaagcagttgagattttgatggatatgaagacaggaaatataggtgttgatgtttattcttatagt |
27361535 |
T |
|
| Q |
119 |
gctgttatgaatggattatgtaaagtgggtcgttcggacgaagcgatggagttgtttgatgaagctgttggagttggattgagtcctgacgtggttactt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | |
|
|
| T |
27361534 |
gctgttatgaatggattatgtaaagtgggtcgttcggacgaagcgatggagttgtttgatgaagctgttggagttggattgaggcctgatgtggttacat |
27361435 |
T |
|
| Q |
219 |
ttaatgcattgattgaagggtatagtagggaagggagagaaatggagggtgttggtgttttgaagatgatgaaagagcatggttgtgttgctgatttgat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27361434 |
ttaatgcattgattgaagggtatagtagggaagggagagaaatggagggtgttggtgttttgaagatgatgaaagagcatggttgtgttgctgatttgat |
27361335 |
T |
|
| Q |
319 |
taattataagactgttttacatgggttgttaaagtggaatgaaactgtggaagcatttggggtttataaagaaatggtaaggattggatttgaagtcgat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27361334 |
taattataagactgttttacatgggttgttaaagtggaatgaaactgtggaagcatttggggtttataaagaaatggtaaggattggatttgaagtcgat |
27361235 |
T |
|
| Q |
419 |
tcgaggatgatggggactttggtgaggcgtttgtgtaagtggtcatggagggaaaaagggttgcttgaggatgcttgtgaagtgtttgagaaaatgaaag |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27361234 |
tcgaggatgatggggactttggtgaggcgtttgtgtaagttgtcatggagggaaaaagggttgcttgaggatgcttgtgaagtgtttgagaaaatgaaag |
27361135 |
T |
|
| Q |
519 |
aaagggatttggtggttgat |
538 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
27361134 |
aaaggggtttggtggttgat |
27361115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University