View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4876_low_4 (Length: 282)
Name: NF4876_low_4
Description: NF4876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4876_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 3659268 - 3658993
Alignment:
| Q |
1 |
acaagagacattgagttgtggagctatgatctgtagacatgacatgaactagaatatacttgcatgattcagaagcaatttaaaattgacaacatgaaaa |
100 |
Q |
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| T |
3659268 |
acaagagacattgagttgtggagctatgatatgtagtcatgacatgaactagaatatacttgcatgattcagaagcaattcaaaattgacaacat---aa |
3659172 |
T |
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| Q |
101 |
cttggcatactgtttataaaattttggatgcttttcttctcattaaggagttctgtcctatgcaaatggctctaattctaatcattt-taaaatgcttta |
199 |
Q |
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| T |
3659171 |
cttggcatactgtttatgaaattttggatgctttttttctca-taaggagttttgtccaatgaaaaaggctgtaattctagtcatttgtaaaatgcttca |
3659073 |
T |
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| Q |
200 |
ttacacgttccaggggttaatagatcaagttatagggaaaggaagctccacttaatctgtttcaatctcttttctgcaaa |
279 |
Q |
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| T |
3659072 |
ttgtacgttctaaggtttaacagatcaagttatagggaaatcaagctccacttaatctgtttcaatctcttatgtgcaaa |
3658993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 108 - 282
Target Start/End: Complemental strand, 3652994 - 3652820
Alignment:
| Q |
108 |
tactgtttataaaattttggatgcttttcttctcattaaggagttctgtcctatgcaaatggctctaattctaatcattttaaaatgctttattacacgt |
207 |
Q |
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| T |
3652994 |
tactgtttataaaattttggatgcttttcttctcattaagaagttctgtcctatgcaagtggctctaattctaatcattttaaaatgctttattacacgt |
3652895 |
T |
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| Q |
208 |
tccaggggttaatagatcaagttatagggaaaggaagctccacttaatctgtttcaatctcttttctgcaaaaat |
282 |
Q |
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| T |
3652894 |
tccaggggttaatggatcaagttatagggaaagcaagctccacttaatctgtttcaatctcttttctgcaaaaat |
3652820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 3651083 - 3650945
Alignment:
| Q |
144 |
taaggagttctgtcctatgcaaatggctctaattctaatcattttaaaatgctttattacacgttccaggggttaatagatcaagttatagggaaaggaa |
243 |
Q |
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| T |
3651083 |
taaggagttctgtcctacgcaaatggatctaattctaatcattttaaaatgcttcattacacgttccaagggttagcagatcaagttacagggaaagcaa |
3650984 |
T |
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| Q |
244 |
gctccacttaatctgtttcaatctcttttctgcaaaaat |
282 |
Q |
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| T |
3650983 |
gctccacttaatctgtttcaatctcttttctgcaaaaat |
3650945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 144 - 282
Target Start/End: Original strand, 3706454 - 3706592
Alignment:
| Q |
144 |
taaggagttctgtcctatgcaaatggctctaattctaatcattttaaaatgctttattacacgttccaggggttaatagatcaagttatagggaaaggaa |
243 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||| |||||||| || |
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| T |
3706454 |
taaggagttctgtcctacgcaaatggatctaattctaatcattttaaaatgcttcattacacgttccaagggttagcagatcaagttacagggaaagcaa |
3706553 |
T |
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| Q |
244 |
gctccacttaatctgtttcaatctcttttctgcaaaaat |
282 |
Q |
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| T |
3706554 |
gctccacttaatctgtttcaatctcttttctgcaaaaat |
3706592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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