View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4876_low_7 (Length: 237)
Name: NF4876_low_7
Description: NF4876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4876_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 15018723 - 15018943
Alignment:
| Q |
1 |
taaacaaggttatgatgatagatcagataatctagtactagtgctgtcaaaatgaattttggcttgatgtcttctctcattctatattcctttataaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15018723 |
taaacaaggttatgatgatagatcagataatctagtactagtgctgtcaaaatgaattttggcttgatgtcttctctcattctatattcctttataaata |
15018822 |
T |
|
| Q |
101 |
gtacagactcagtagctacaattagtaacttcctaaattatacaaaatatataggaaactaatgatgatagatccccttattgacaagtacaagttgtag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15018823 |
gtacagactcagtagctacaattagtaacttcctaaattatacaaaatatataggaaactaatgatgacagatccccttattgacaagtacaagttgtag |
15018922 |
T |
|
| Q |
201 |
aacaagataagaggtgaatat |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
15018923 |
aacaagataagaggtgaatat |
15018943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 15025841 - 15026061
Alignment:
| Q |
1 |
taaacaaggttatgatgatagatcagataatctagtactagtgctgtcaaaatgaattttggcttgatgtcttctctcattctatattcctttataaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15025841 |
taaacaaggttatgatgatagatcagataatctagtactagtgctgtcaaaatgaattttggcttgatgtcttctctcattctatattcctttataaata |
15025940 |
T |
|
| Q |
101 |
gtacagactcagtagctacaattagtaacttcctaaattatacaaaatatataggaaactaatgatgatagatccccttattgacaagtacaagttgtag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15025941 |
gtacagactcagtagctacaattagtaacttcctaaattatacaaaatatataggaaactaatgatgacagatccccttattgacaagtacaagttgtag |
15026040 |
T |
|
| Q |
201 |
aacaagataagaggtgaatat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
15026041 |
aacaagataagaggtgaatat |
15026061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 15004301 - 15004405
Alignment:
| Q |
117 |
tacaattagtaacttcctaaattatacaaaatatataggaaactaatgatgatagatccccttattgacaagtacaagttgtagaacaagataagaggtg |
216 |
Q |
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||||||||||||||| ||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
15004301 |
tacaattagtaacttactaaattatacaaaatataaagaaaactaatgatgacagatccccttattgacaagtacatgttgtagaacaagataagaggtg |
15004400 |
T |
|
| Q |
217 |
aatat |
221 |
Q |
| |
|
||||| |
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|
| T |
15004401 |
aatat |
15004405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 15044134 - 15044230
Alignment:
| Q |
117 |
tacaattagtaacttcctaaattatacaaaatatataggaaactaatgatgatagatccccttattgacaagtacaagttgtagaacaagataagag |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15044134 |
tacaattagtaacttcctaaattatacaaaatatataggaaactaatcataacagatccccttattgacaagtacaagttgtagaacaagataagag |
15044230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 15043985 - 15044062
Alignment:
| Q |
24 |
cagataatctagtactagtgctgtcaaaatgaattttggcttgatgtcttctctcattctatattcctttataaatag |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15043985 |
cagataatctagtactagtgctgtcaaaatgaattttggcttgatgtcttctctcattctatattccttcataaatag |
15044062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 15004167 - 15004239
Alignment:
| Q |
52 |
atgaattttggcttgatgtcttctctcattctatattcctttataaatagtacagactcagtagctacaatta |
124 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| || ||||||||| |||||||||||||||||| |
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| T |
15004167 |
atgaattttggcttgatgtcttctctcattatatattccttcatgaatagtacaaactcagtagctacaatta |
15004239 |
T |
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