View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4877-Insertion-2 (Length: 329)
Name: NF4877-Insertion-2
Description: NF4877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4877-Insertion-2 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 329
Target Start/End: Original strand, 47580873 - 47581194
Alignment:
| Q |
8 |
ggaactggctggctggtaaggttcactacactttgaaattatttctggaatcatggacaagaaacttatgattgaattttatgtggcactcttattgtta |
107 |
Q |
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| T |
47580873 |
ggaactggctggctggtaaggttcactacactttgaaattatttctggaatcatggacaagaaacttatgattgaattttatgtggcactcttattgtta |
47580972 |
T |
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| Q |
108 |
tcttagggagtagcttctttgctcaatggcatgtttggttgtgtaaccggaagtgcagcatcagtgtaagtttacctcatatctctttctcataaaattc |
207 |
Q |
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| T |
47580973 |
tcttagggagtagcttctttgctcaatggcatgtttggttgtgtaaccggaagtgcagcatcagtgtacgtttacctcatatctctttctcataaaattc |
47581072 |
T |
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| Q |
208 |
tctttgtgctattcattttctgcattatgcaccgcacctatttcagggaaaacgctggactattggcattgacaagagtgggaagccgaagagtcatcca |
307 |
Q |
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| T |
47581073 |
tctttgtgctattcattttctgcattatgcaccgcacctatttcagggaaaacgctggactattggcattgacaagagtgggaagccgaagagtcatcca |
47581172 |
T |
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| Q |
308 |
aatatcagctgggtttatgatt |
329 |
Q |
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| T |
47581173 |
aatatcagctggttttatgatt |
47581194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 66 - 244
Target Start/End: Complemental strand, 42776 - 42600
Alignment:
| Q |
66 |
aagaaacttatgattgaattttatgtggcactcttattgttatcttagggagtagcttctttgctcaatggcatgtttggttgtgtaaccggaagtgcag |
165 |
Q |
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| T |
42776 |
aagaaacttatgattgaattttatgtggcactcttattgttatcttagggagtagcttctttgctcaatggcatgtttggttctgtaaccggaagtgcag |
42677 |
T |
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| Q |
166 |
catcagtgtaagtttacctcatatctctttctcataaaattctctttgtgctattcattttctgcattatgcaccgcac |
244 |
Q |
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| T |
42676 |
catcggtgtacgtttatctc--atctctttctcataagattctctttgtcctattcattttctgcattatgcactgcac |
42600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 66 - 244
Target Start/End: Complemental strand, 27258707 - 27258531
Alignment:
| Q |
66 |
aagaaacttatgattgaattttatgtggcactcttattgttatcttagggagtagcttctttgctcaatggcatgtttggttgtgtaaccggaagtgcag |
165 |
Q |
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| T |
27258707 |
aagaaacttatgattgaattttatgtggcactcttattgttatcttagggagtagcttctttgctcaatggcatgtttggttttgtaatcggaagtgcaa |
27258608 |
T |
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| Q |
166 |
catcagtgtaagtttacctcatatctctttctcataaaattctctttgtgctattcattttctgcattatgcaccgcac |
244 |
Q |
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| T |
27258607 |
catcggtgtacgtttatctc--atctctttctcataagattctctttgtcctgttcattttctgcattatgcactgcac |
27258531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 8684842 - 8684911
Alignment:
| Q |
110 |
ttagggagtagcttctttgctcaatggcatgtttggttgtgtaaccggaagtgcagcatcagtgtaagtt |
179 |
Q |
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| T |
8684842 |
ttagggagtaggtgctttgtttagtggcatgtttggttgtgtaactggaactacagcatcagtgtaagtt |
8684911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 8685015 - 8685096
Alignment:
| Q |
248 |
tttcagggaaaacgctggactattggcattgacaagagtgggaagccgaagagtcatccaaatatcagctgggtttatgatt |
329 |
Q |
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| T |
8685015 |
tttcagggaaaatgctggtttactagcattaacaaaagtaggaagcagaagagtaattcaaatatcagccggctttatgatt |
8685096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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