View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4877-Insertion-3 (Length: 200)
Name: NF4877-Insertion-3
Description: NF4877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4877-Insertion-3 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-106
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 742210 - 742403
Alignment:
| Q |
7 |
acattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtccatca |
106 |
Q |
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| T |
742210 |
acattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtccatca |
742309 |
T |
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| Q |
107 |
gttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttctccacttcttcgaaaagtagcacaatgtttggcc |
200 |
Q |
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| T |
742310 |
gttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttctccacttcttcgaaaagtagcacaatgtttggcc |
742403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 42449340 - 42449533
Alignment:
| Q |
7 |
acattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtccatca |
106 |
Q |
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| T |
42449340 |
acattttcctgaaagtccacttaagagatgatcggcaccaaggttcgaggtcatgataatgaccatgttcgtaaaatccacagttctgccttgtccatca |
42449439 |
T |
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| Q |
107 |
gttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttctccacttcttcgaaaagtagcacaatgtttggcc |
200 |
Q |
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| T |
42449440 |
gttaaacttccatcctctaagatataaagtaatttgttgattactgaagtatgtgctttctccacttcttccaaaagtagcacactgtttggcc |
42449533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 740117 - 740315
Alignment:
| Q |
7 |
acattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataacgaccgtgt-----tcgtaaaatccacagttctgccttgtc |
101 |
Q |
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| T |
740117 |
acattttcctgaaagtccacttaggagatgctcggaaccaaggtttgaggtcatgataatgactgtgttcctatcctaaaatccacagttctgccttgtc |
740216 |
T |
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| Q |
102 |
catcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttctccacttcttcgaaaagtagcacaatgtttggcc |
200 |
Q |
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| T |
740217 |
catcagttagcctcccataatttaagacttcaagcagagtgtttaatacagatatatgtgctttctccacttgctctaaaagtatcacactgtgtggcc |
740315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 10046757 - 10046583
Alignment:
| Q |
11 |
tttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtccatcagtta |
110 |
Q |
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| T |
10046757 |
tttcctgaaagtccacttatgagatgatcggcgccgaggtttgaggtcatgataatgactgtgttcctaaaatccacagttcttccttggccatcagtta |
10046658 |
T |
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| Q |
111 |
aactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttctccacttcttcgaaaagta |
185 |
Q |
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| T |
10046657 |
atcttccgtcatctaggacttgaagcagagtgttgaatacagatgtatgtgctttctctacttcatcaaaaagta |
10046583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 38708365 - 38708308
Alignment:
| Q |
8 |
cattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataa |
65 |
Q |
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| T |
38708365 |
cattttcctgaaagtccacttatgagatgctcggcaccaaggtttgaggtcatgataa |
38708308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 45468422 - 45468309
Alignment:
| Q |
7 |
acattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtccatca |
106 |
Q |
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||||||||||||||||||||| |||||| ||||| |||||||| ||||||||||| | || ||||| ||||||||||||||||||||||||| ||| |
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| T |
45468422 |
acattttcctgaaagtccactcaagagatgctcagcaccaaggttagaggtcatgatgatcacagtgtttctaaaatccacagttctgccttgtccgtca |
45468323 |
T |
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| Q |
107 |
gttaaactcccatc |
120 |
Q |
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| T |
45468322 |
gtcaacctcccatc |
45468309 |
T |
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