View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4878-Insertion-1 (Length: 1030)
Name: NF4878-Insertion-1
Description: NF4878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4878-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 666; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 196 - 1020
Target Start/End: Complemental strand, 50326180 - 50325344
Alignment:
| Q |
196 |
tattattcacaccagtgatgaagagaggcttgcccttgttccttttacaaaaaa-tgtatcataaatctagttatttagaacattacccagtcatgagta |
294 |
Q |
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| T |
50326180 |
tattattcacaccagtgatgaagagaggcttgcccttgttccttttacaaaaaaatgtatcataaatctagttatttagaacattacccagtcatgagta |
50326081 |
T |
|
| Q |
295 |
ccacgagcttccttcatcccatatgtgagtcctgaatatagtcctgcagccaaccctgcatttttcgaaaaatttgaaggat----catttccacaatcc |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
50326080 |
ccacgagcttccttcatcccatatgtgagtcctgaatatagtcctgcagccaaccctgcatttttcgaaaaatttgaaggatatatcatttccacaatcc |
50325981 |
T |
|
| Q |
391 |
ttctagataattcttatacgcaataattaaagaaaataagttattgaacgtaaacacatgtagcacgtgctacgcgaaatgtagacatactcgcatatgc |
490 |
Q |
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| T |
50325980 |
ttctagataattcttatacgcaataattaaagaaaataagttattgaacgtaaacacatgtggcacgtgctacgtgaaatgtggacatactcgcatatgc |
50325881 |
T |
|
| Q |
491 |
tatacaagttcagcattaataaattattacataaaactataaaatagtccctaattattggaaaattgccaaattcacatattagatagaagcacacgag |
590 |
Q |
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| T |
50325880 |
tatacaagttcagaattaataaattattacataaaactataaaatagtccctaattattggaaaattgccaaattcacatattatatagaagcacacgag |
50325781 |
T |
|
| Q |
591 |
gtctcttcaagttgagagaatttatgattaccccattggaaggattctttccctgtgttttttacctgatgaaggaaaaaagacaacaattaaaccaaaa |
690 |
Q |
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| T |
50325780 |
gtctcttcaagttgagagaatttatgattaccccattggaaggattctttccctgtgttttttacctgatgaaggaaaaaagacaacaattaaaccaaaa |
50325681 |
T |
|
| Q |
691 |
agacagaacataacataaaaaggccagcatgtttttgcatatattg-aaaagtacaatttcacgtaagcaactgtaaggcaacaactctcctgtacatat |
789 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50325680 |
agacagaacataaaataaaaaggccagcatgtttttgcatatattgaaaaagtacaatttcacgtaagcaactgtaaggcaacaactctcctgtacacat |
50325581 |
T |
|
| Q |
790 |
gaactcaccattgcctcaatggatttactgctggtctctcctgtatgtgc-aaaaatcgaaagaaaatgttgttactattttaactcattttaagattgg |
888 |
Q |
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| T |
50325580 |
gaactcaccattgcctcaatagatttactgctggtctctcctgtatgtgcaaaaaatcgaaagaaaatgttgttactattttaactcattttaagattgg |
50325481 |
T |
|
| Q |
889 |
tnnnnnnnnnnntctcatatctagattcatattaaatatctatgctctgaatttactggttcagcatagttta-nnnnnnngtaa-tttagtatacctct |
986 |
Q |
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| T |
50325480 |
taaaaaaaaaaatctcatatctagattcatattaaatatctatgctctgaatttactggttcagcatagttaattttttttgtaattttagtatacctct |
50325381 |
T |
|
| Q |
987 |
-agaccatg-aaacgatttttc-tggctccagatatt |
1020 |
Q |
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| T |
50325380 |
aagaccatgaaaacgatttttcttggctccagatatt |
50325344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 50326334 - 50326187
Alignment:
| Q |
8 |
gaaatcgcagctccggtaatagcacattgcgcaatctgttcatgagaagtgttatctgatgtacatgcaagtgctgcaccagtgattgctccagcaactg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
50326334 |
gaaatcgcagctccggtaatagcacattgcgcaatctgttcatgagatgtgttatctgatgtacatgcaagtgctgctccagtgattgctccagcaactg |
50326235 |
T |
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| Q |
108 |
cactatttttctgcaacagaataaataattactcaagcacatgtaata |
155 |
Q |
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| T |
50326234 |
cactatttttctgcaacagaataaataattactcaagcacatgtaata |
50326187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 13202643 - 13202711
Alignment:
| Q |
278 |
ttacccagtcatgagtaccacgagcttccttcatcccatatgtgagtcctgaatatagtcctgcagcca |
346 |
Q |
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| T |
13202643 |
ttacccagtcatgagctcctcgagcttccttcagcccatatgttaggccggagtatattcctgcagcca |
13202711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 13202407 - 13202440
Alignment:
| Q |
89 |
gtgattgctccagcaactgcactatttttctgca |
122 |
Q |
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| T |
13202407 |
gtgattgctccagcaactgcactgtttttctgca |
13202440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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