View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4878-Insertion-2 (Length: 629)
Name: NF4878-Insertion-2
Description: NF4878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4878-Insertion-2 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0722 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 8 - 629
Target Start/End: Original strand, 35882474 - 35883090
Alignment:
| Q |
8 |
ttatgatgaacaaaacaaacacaaaggtagagaaaacaggaccatttgagtttgaaacagaatcaggaacaacatgggttgcagatgtgaaagaaccaac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35882474 |
ttatgatgaacaaaacaaacacaaaggtagagaaaacaggaccatttgagtttgaaacagaatcaggaacaacatgggttgcagatgtgaaagaaccaac |
35882573 |
T |
|
| Q |
108 |
atctgcagcagtggtgatgtttgagaaaccattgatgaacttcacattcaaagatctcatcattgccacgtcacatttcgggaaagagtcacagctagca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35882574 |
atctgcagcagtggtgatgtttgagaaaccattgatgaacttcacattcaaagatctcatcattgccacgtcacatttcgggaaagagtcacagctagca |
35882673 |
T |
|
| Q |
208 |
gaaggaaggtgtggaccagtgtattgggccgtgttacccggtgaaatacacgtggcaatcaaggttcttgaacatgtcagagacgttgattatgatgact |
307 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35882674 |
gaaggaaggtgtggaccagtgtattgggccgtgttgcccggtgaaatacacgtggcaatcaaggttcttgaacatgtcagagacgttgattatgatgact |
35882773 |
T |
|
| Q |
308 |
ctgtggctatgtttgttgacttatcgaaactgaaacatccaaacttgttgcctctttctggttactgtattgcaggtat----gtgtgtaccgtacagnn |
403 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35882774 |
ctgtggctatgtttgttgacttatcgaaactgaaacatccaaacttgttgcctctttctggttactgtattgcaggtatgtatgtgtgtaccgtacagaa |
35882873 |
T |
|
| Q |
404 |
nnnnnntgattcaatgttttgaattttgatttctttcgagtagttaccttactgcaatgcaactatcattcattaatggctagctttcacgggtttttaa |
503 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
35882874 |
aaaaaatgattcaatgttttgaattttgatttctttcgagtagttaccttac-----tgcaactatcattcattaatg----gctttcacgggtttttaa |
35882964 |
T |
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| Q |
504 |
ttttctaatgtcctattctctgttccataacatggttgtgtggtggtgtgtcacaatttcatgttatgtggaaaataaaatacaaaatctatggttcctg |
603 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35882965 |
ttttctaatgtcctattctctgttccataacatggttgtgtggtggtgtgtcacaatttcatgttatgtggaaaataaaatacaaaatctatggttcctg |
35883064 |
T |
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| Q |
604 |
gatatgattgcgtttgggtatttgtg |
629 |
Q |
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| T |
35883065 |
gatatgattgcgtttgggtatttgtg |
35883090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 8 - 629
Target Start/End: Original strand, 24456675 - 24457291
Alignment:
| Q |
8 |
ttatgatgaacaaaacaaacacaaaggtagagaaaacaggaccatttgagtttgaaacagaatcaggaacaacatgggttgcagatgtgaaagaaccaac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24456675 |
ttatgatgaacaaaacaaacacaaaggtagagaaaacaggaccatttgagtttgaaacagaatcaggaacaacatgggttgcagatgtgaaagaaccaac |
24456774 |
T |
|
| Q |
108 |
atctgcagcagtggtgatgtttgagaaaccattgatgaacttcacattcaaagatctcatcattgccacgtcacatttcgggaaagagtcacagctagca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24456775 |
atctgcagcagtggtgatgtttgagaaaccattgatgaacttcacattcaaagatctcatcattgccacgtcacatttcgggaaagagtcacagctagca |
24456874 |
T |
|
| Q |
208 |
gaaggaaggtgtggaccagtgtattgggccgtgttacccggtgaaatacacgtggcaatcaaggttcttgaacatgtcagagacgttgattatgatgact |
307 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24456875 |
gaaggaaggtgtggaccagtgtattgggccgtgttgcccggtgaaatacacgtggcaatcaaggttcttgaacatgtcagagacgttgattatgatgact |
24456974 |
T |
|
| Q |
308 |
ctgtggctatgtttgttgacttatcgaaactgaaacatccaaacttgttgcctctttctggttactgtattgcaggtat----gtgtgtaccgtacagnn |
403 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24456975 |
ctgtggctatgtttgttgacttatcgaaactgaaacatccaaacttgttgcctctttctggttactgtattgcaggtatgtatgtgtgtaccgtacagaa |
24457074 |
T |
|
| Q |
404 |
nnnnnntgattcaatgttttgaattttgatttctttcgagtagttaccttactgcaatgcaactatcattcattaatggctagctttcacgggtttttaa |
503 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
24457075 |
aaaaaatgattcaatgttttgaattttgatttctttcgagtagttaccttac-----tgcaactatcattcattaatg----gctttcacgggtttttaa |
24457165 |
T |
|
| Q |
504 |
ttttctaatgtcctattctctgttccataacatggttgtgtggtggtgtgtcacaatttcatgttatgtggaaaataaaatacaaaatctatggttcctg |
603 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24457166 |
ttttctaatgtcctattctctgttccataacatggttgtgtggtggtgtgtcacaatttcatgttatgtggaaaataaaatacaaaatctatggttcctg |
24457265 |
T |
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| Q |
604 |
gatatgattgcgtttgggtatttgtg |
629 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
24457266 |
gatatgattgcgtttgggtatttgtg |
24457291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0722 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0722
Description:
Target: scaffold0722; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 37 - 385
Target Start/End: Complemental strand, 2481 - 2132
Alignment:
| Q |
37 |
gagaaaacaggaccatttgagtttgaaacagaatcaggaacaacatgggttgcagatgtgaaagaaccaacatctgcagcagtggtgatgtttgagaaac |
136 |
Q |
| |
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|||||| | ||||| |||| ||||| |||||||| |||||| | ||||| || ||| | ||||||||||| || ||| |||| || ||||||||||||| |
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| T |
2481 |
gagaaatctggaccgtttgcatttgagacagaatctggaacatcgtgggtagctgatctaaaagaaccaacttcagcatcagttgtcatgtttgagaaac |
2382 |
T |
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| Q |
137 |
cattgatgaacttcacattcaaagatctcatcattgccacgtcacatttcgggaaagagtcacagctagcagaaggaaggtgtggaccagtgtattgggc |
236 |
Q |
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| ||||||||| | | |||| ||||| || | |||||||||| |||| |||||||| || |||||||| ||||| || ||||| || || ||| | || |
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| T |
2381 |
ctttgatgaacattagtttcatggatcttatgaatgccacgtcatattttgggaaagattctcagctagctgaaggtagatgtgggcccgtttatcgtgc |
2282 |
T |
|
| Q |
237 |
cgtgttacccggtgaaatacacgtggcaatcaaggttcttgaacatgtcagagacgttgattatgatgactctgtggctatgtttg-ttgacttatcgaa |
335 |
Q |
| |
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|| ||||| || || ||||||||||||| |||||||||||| ||| ||||| |||||| ||||||| |||| | || |||| ||||||| || || |
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| T |
2281 |
tgttttacctggggagttacacgtggcaattaaggttcttgaaaatgctagagaggttgatcatgatgatgctgttgatacttttgtttgacttgtctaa |
2182 |
T |
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| Q |
336 |
actgaaacatccaaacttgttgcctctttctggttactgtattgcaggta |
385 |
Q |
| |
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|| |||||||| || | ||||| |||||||||||||| || ||||||| |
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| T |
2181 |
gcttaaacatcccaatcttttgccactttctggttactgcatcgcaggta |
2132 |
T |
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