View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4878-Insertion-3 (Length: 412)
Name: NF4878-Insertion-3
Description: NF4878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4878-Insertion-3 |
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| [»] scaffold0168 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 139 - 404
Target Start/End: Original strand, 8391623 - 8391888
Alignment:
| Q |
139 |
gataatcgagtctaaattaagaaggagatgcaataacctctgcactcaatttcaaaagcatagtcgcagcaatacaaacatatctacagatagaatctct |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8391623 |
gataatcgagtctaaattaagaaggagatgcaataacctctacactcaatttcaaaagcatagtcgcagcaatacaaacatatctacagatagaatctct |
8391722 |
T |
|
| Q |
239 |
cttttgacagtgaaagaaaaagagagaaaatgcaatttctgcattcaccttttactttaaggctctcatgtttttccttccccacagtgatcttcttttc |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8391723 |
cttttgacagtgaaagaaaaagagagaaaatgcaatttctgcattcaccttttactttaaggctctcatgtttttccttccccacagtgatcttcttttc |
8391822 |
T |
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| Q |
339 |
catttgacagcgcatttgcatgagctgtaaatagtattttatattttcattttcatacaatactta |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
8391823 |
catttgacagcgcatttgcatgagctgtaaatagtattttatattttcattttaatgcaatactta |
8391888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 8391484 - 8391587
Alignment:
| Q |
8 |
cggcgaccactccccgccctcttcagctgtgggtgttacaatgagtgtcacataattaactttagcagtccatgtaattatttaagtgacttttcaatca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8391484 |
cggcgaccactccccgccctcttcagctgtgggtgttacaatgagtgtcacataattaactttagcagtccatgtaattatttaagtgacttttcaatca |
8391583 |
T |
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| Q |
108 |
taaa |
111 |
Q |
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|||| |
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| T |
8391584 |
taaa |
8391587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 42788842 - 42788888
Alignment:
| Q |
8 |
cggcgaccactccccgccctcttcagctgtgggtgttacaatgagtg |
54 |
Q |
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| T |
42788842 |
cggcgaccactccccgccctcgtcagccttgggtgttacaataagtg |
42788888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 34371561 - 34371520
Alignment:
| Q |
8 |
cggcgaccactccccgccctcttcagctgtgggtgttacaat |
49 |
Q |
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| T |
34371561 |
cggcgaccactccccgccctcgtcagccttgggtgttacaat |
34371520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 11180230 - 11180269
Alignment:
| Q |
8 |
cggcgaccactccccgccctcttcagctgtgggtgttaca |
47 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |
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| T |
11180230 |
cggcgaccactccccgccctcttcagccttgggtgttaca |
11180269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0168 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0168
Description:
Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 2691 - 2651
Alignment:
| Q |
8 |
cggcgaccactccccgccctcttcagctgtgggtgttacaa |
48 |
Q |
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| T |
2691 |
cggcgaccactccccgccctcgtcagccttgggtgttacaa |
2651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 2463591 - 2463551
Alignment:
| Q |
8 |
cggcgaccactccccgccctcttcagctgtgggtgttacaa |
48 |
Q |
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| T |
2463591 |
cggcgaccactccccgccctcgtcagccttgggtgttacaa |
2463551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 16452130 - 16452170
Alignment:
| Q |
8 |
cggcgaccactccccgccctcttcagctgtgggtgttacaa |
48 |
Q |
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||||||||||||||||||||| ||||| |||||||||||| |
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| T |
16452130 |
cggcgaccactccccgccctcgtcagccttgggtgttacaa |
16452170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 16461283 - 16461323
Alignment:
| Q |
8 |
cggcgaccactccccgccctcttcagctgtgggtgttacaa |
48 |
Q |
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||||||||||||||||||||| ||||| |||||||||||| |
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| T |
16461283 |
cggcgaccactccccgccctcgtcagccttgggtgttacaa |
16461323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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