View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4878_high_2 (Length: 549)

Name: NF4878_high_2
Description: NF4878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4878_high_2
NF4878_high_2
[»] chr5 (12 HSPs)
chr5 (18-544)||(34639408-34639934)
chr5 (20-292)||(34633688-34633958)
chr5 (431-482)||(13838861-13838912)
chr5 (305-405)||(13263518-13263611)
chr5 (431-482)||(6462384-6462435)
chr5 (421-479)||(4283126-4283184)
chr5 (421-460)||(16869957-16869996)
chr5 (312-346)||(34633960-34633994)
chr5 (431-460)||(1621561-1621590)
chr5 (431-460)||(9004857-9004886)
chr5 (431-459)||(11863386-11863414)
chr5 (421-457)||(41892918-41892954)
[»] chr3 (5 HSPs)
chr3 (421-482)||(38684754-38684815)
chr3 (431-470)||(9198189-9198228)
chr3 (431-460)||(32109551-32109580)
chr3 (431-460)||(32326158-32326187)
chr3 (421-470)||(36879048-36879097)
[»] chr6 (2 HSPs)
chr6 (441-510)||(2255282-2255352)
chr6 (431-472)||(8014699-8014740)
[»] chr2 (5 HSPs)
chr2 (421-482)||(27679099-27679160)
chr2 (431-464)||(44984341-44984374)
chr2 (431-460)||(15804441-15804470)
chr2 (431-464)||(40909949-40909982)
chr2 (431-467)||(31062980-31063016)
[»] chr1 (10 HSPs)
chr1 (301-346)||(1415635-1415680)
chr1 (421-481)||(10518256-10518316)
chr1 (421-460)||(20004003-20004042)
chr1 (431-466)||(20791970-20792005)
chr1 (430-460)||(37131516-37131546)
chr1 (431-460)||(15942493-15942522)
chr1 (298-354)||(42747517-42747571)
chr1 (421-465)||(28736207-28736251)
chr1 (301-353)||(35058502-35058554)
chr1 (421-473)||(35272615-35272667)
[»] chr7 (3 HSPs)
chr7 (434-482)||(24432754-24432802)
chr7 (300-346)||(3836851-3836897)
chr7 (441-482)||(12473126-12473167)
[»] chr4 (6 HSPs)
chr4 (424-460)||(20988825-20988861)
chr4 (421-460)||(3535194-3535233)
chr4 (431-473)||(21501653-21501695)
chr4 (431-460)||(24418250-24418279)
chr4 (431-460)||(52831491-52831520)
chr4 (306-346)||(22815188-22815227)
[»] chr8 (1 HSPs)
chr8 (303-353)||(37740540-37740590)
[»] scaffold0004 (1 HSPs)
scaffold0004 (431-460)||(339039-339068)


Alignment Details
Target: chr5 (Bit Score: 479; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 544
Target Start/End: Original strand, 34639408 - 34639934
Alignment:
Q  18 actcaattgatcagaaaaactcaaccgggtcatcgcgccgtgctttccgccgccgtcaatcgataccagggttcatttgttcctacgtttcacttttctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34639408 actcaattgatcagaaaaactcaaccgggtcatcgcgccgtgctttccgccgccgtcaatcgataccagggttcatttgttcctacgtttcacttttctt 34639507  T
Q  118 ctgtatctgtcaaaaacaaagccacctccgatgatattcttctccgtttcatcgaatcggaaatcacttgtgctcaggaaaccgatgatttcggcgctgt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34639508 ctgtatctgtcaaaaacaaagccacctccgatgatattcttctccgtttcatcgaatcggaaatcacttgtgctcaggaaactgatgatttcggcgctgt 34639607  T
Q  218 aagtttcatctttcttaatttattagactcatgattgtagtaatagaaacactgcttttcttttttaatttcatttatatatagggtctgtttggctaga 317  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34639608 aagtttcatcttccttaatttattagactcatgattgtagtaatagaaacactgtttttcttttttaatttcatttatatatagggtctgtttggctaga 34639707  T
Q  318 cacatttttgaacttatagcttataagctggtatgatatgattaaaaaagacctgtttcgtaacaatcattttctcaccagcttataacnnnnnnnnagt 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||    
T  34639708 cacatttttgaacttatagcttataagctggtatgatatgattaaaaaagacctgtttcgtaacaatcattttctcaccagcttataacttttttttagt 34639807  T
Q  418 atgttatagcatcttttgataagctaattcaagtagcttataggttaaaacttttagcttatcatggtctctcaattttaccctgtaatcttaggctctg 517  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34639808 atgttatagcatcttttgataagctaattcaagtagcttatagcttaaaacttttagcttatcatggtctctcaattttaccctgtaatcttaggctctg 34639907  T
Q  518 gttggtaagacataaatttggtctgtg 544  Q
    ||||||| |||||||||||||| ||||    
T  34639908 gttggtatgacataaatttggtttgtg 34639934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 20 - 292
Target Start/End: Original strand, 34633688 - 34633958
Alignment:
Q  20 tcaattgatcagaaaaactcaaccgggtcatcgcgccgtgctttccgccgccgtcaatcgataccagggttcatttgttcctacgtttcacttttcttct 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || || |||| || ||| |||||||||||||||||| |||| |||||||||||    
T  34633688 tcaattgatcagaaaaactcaaccgggtcatcgcgccgtgctttccaccaccatcaaccgctacgagggttcatttgttcctaagtttaacttttcttct 34633787  T
Q  120 gtatctgtcaaaaacaaagccacctccgatgatattcttctccgtttcatcgaatcggaaatcacttgtgctcaggaaaccgatgatttcggcgctgtaa 219  Q
    ||| || | |||||| || ||| ||||||||| | ||||||| |||| || |||||| | ||||||||  |||||||||||||||| ||| |||||||||    
T  34633788 gtagctataaaaaacgaacccaactccgatgagactcttctctgtttaattgaatcgaagatcacttgcactcaggaaaccgatgagttccgcgctgtaa 34633887  T
Q  220 gtttcatctttcttaatttattagactcatgattgtagtaatagaaacactgcttttcttttttaatttcatt 292  Q
      ||  ||||  ||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  34633888 actt-gtcttctttaatttattagactcatgattgtagtaatagaaacagtgtttttc-tttttaatttcatt 34633958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 431 - 482
Target Start/End: Complemental strand, 13838912 - 13838861
Alignment:
Q  431 ttttgataagctaattcaagtagcttataggttaaaacttttagcttatcat 482  Q
    ||||||| |||||||||||||||||||||| ||||||||| |||||||||||    
T  13838912 ttttgattagctaattcaagtagcttatagcttaaaacttatagcttatcat 13838861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 305 - 405
Target Start/End: Complemental strand, 13263611 - 13263518
Alignment:
Q  305 ctgtttggctagacacatttttgaacttatagcttataagctggtatgatatgattaaaaaagacctgtttcgtaacaatcattttctcaccagcttata 404  Q
    ||||||||| ||||||| |||||| |||||||||||||| ||       ||||| ||||| |||| ||||| ||||||||||||||||||| ||||||||    
T  13263611 ctgtttggcgagacacaattttgatcttatagcttataaact-------tatgactaaaatagacttgtttggtaacaatcattttctcacaagcttata 13263519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 431 - 482
Target Start/End: Complemental strand, 6462435 - 6462384
Alignment:
Q  431 ttttgataagctaattcaagtagcttataggttaaaacttttagcttatcat 482  Q
    |||||||||||||||||||||||||||||  ||||| ||| |||||||||||    
T  6462435 ttttgataagctaattcaagtagcttatatcttaaagcttatagcttatcat 6462384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 479
Target Start/End: Original strand, 4283126 - 4283184
Alignment:
Q  421 ttatagcatcttttgataagctaattcaagtagcttataggttaaaacttttagcttat 479  Q
    ||||| ||| ||||||||||||||||||| |||||||||| ||||| ||| ||||||||    
T  4283126 ttataccattttttgataagctaattcaaatagcttatagcttaaaccttatagcttat 4283184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Complemental strand, 16869996 - 16869957
Alignment:
Q  421 ttatagcatcttttgataagctaattcaagtagcttatag 460  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  16869996 ttatagcgttttttgataagctaattcaagtagcttatag 16869957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 346
Target Start/End: Original strand, 34633960 - 34633994
Alignment:
Q  312 gctagacacatttttgaacttatagcttataagct 346  Q
    |||||||||||||||||||||||| ||||||||||    
T  34633960 gctagacacatttttgaacttataccttataagct 34633994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 460
Target Start/End: Complemental strand, 1621590 - 1621561
Alignment:
Q  431 ttttgataagctaattcaagtagcttatag 460  Q
    ||||||||||||||||||||||||||||||    
T  1621590 ttttgataagctaattcaagtagcttatag 1621561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 460
Target Start/End: Original strand, 9004857 - 9004886
Alignment:
Q  431 ttttgataagctaattcaagtagcttatag 460  Q
    ||||||||||||||||||||||||||||||    
T  9004857 ttttgataagctaattcaagtagcttatag 9004886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 431 - 459
Target Start/End: Complemental strand, 11863414 - 11863386
Alignment:
Q  431 ttttgataagctaattcaagtagcttata 459  Q
    |||||||||||||||||||||||||||||    
T  11863414 ttttgataagctaattcaagtagcttata 11863386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 457
Target Start/End: Complemental strand, 41892954 - 41892918
Alignment:
Q  421 ttatagcatcttttgataagctaattcaagtagctta 457  Q
    ||||||| | |||||||||||||||||||||||||||    
T  41892954 ttatagcgtgttttgataagctaattcaagtagctta 41892918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 482
Target Start/End: Complemental strand, 38684815 - 38684754
Alignment:
Q  421 ttatagcatcttttgataagctaattcaagtagcttataggttaaaacttttagcttatcat 482  Q
    ||||||| | |||||||||||||||||||||||||||||| ||||| ||| || ||||||||    
T  38684815 ttatagcgttttttgataagctaattcaagtagcttatagcttaaagcttataacttatcat 38684754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 470
Target Start/End: Complemental strand, 9198228 - 9198189
Alignment:
Q  431 ttttgataagctaattcaagtagcttataggttaaaactt 470  Q
    |||||||||||||||||||||||||| ||| |||||||||    
T  9198228 ttttgataagctaattcaagtagcttttagcttaaaactt 9198189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 460
Target Start/End: Original strand, 32109551 - 32109580
Alignment:
Q  431 ttttgataagctaattcaagtagcttatag 460  Q
    ||||||||||||||||||||||||||||||    
T  32109551 ttttgataagctaattcaagtagcttatag 32109580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 460
Target Start/End: Complemental strand, 32326187 - 32326158
Alignment:
Q  431 ttttgataagctaattcaagtagcttatag 460  Q
    ||||||||||||||||||||||||||||||    
T  32326187 ttttgataagctaattcaagtagcttatag 32326158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 470
Target Start/End: Complemental strand, 36879097 - 36879048
Alignment:
Q  421 ttatagcatcttttgataagctaattcaagtagcttataggttaaaactt 470  Q
    ||||||||| |||| |||||||||||||||||||||| || ||| |||||    
T  36879097 ttatagcatttttttataagctaattcaagtagcttagagcttataactt 36879048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 510
Target Start/End: Original strand, 2255282 - 2255352
Alignment:
Q  441 ctaattcaagtagcttataggttaaaacttttagcttatcatggtctctcaattttaccct-gtaatctta 510  Q
    ||||| ||||||||||||||  |||||||| |||||||||||  ||||||||||||| ||| |||||||||    
T  2255282 ctaatccaagtagcttatagcctaaaacttatagcttatcattttctctcaattttatcctcgtaatctta 2255352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 472
Target Start/End: Complemental strand, 8014740 - 8014699
Alignment:
Q  431 ttttgataagctaattcaagtagcttataggttaaaactttt 472  Q
    ||||||||||||||||||| |||||||||| ||| |||||||    
T  8014740 ttttgataagctaattcaattagcttatagcttataactttt 8014699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 421 - 482
Target Start/End: Original strand, 27679099 - 27679160
Alignment:
Q  421 ttatagcatcttttgataagctaattcaagtagcttataggttaaaacttttagcttatcat 482  Q
    ||||||| | |||| ||||||||||||||||||||||| | ||||| ||| |||||||||||    
T  27679099 ttatagcgttttttaataagctaattcaagtagcttatggcttaaagcttatagcttatcat 27679160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 431 - 464
Target Start/End: Complemental strand, 44984374 - 44984341
Alignment:
Q  431 ttttgataagctaattcaagtagcttataggtta 464  Q
    ||||||||||||||||||||||||||||||||||    
T  44984374 ttttgataagctaattcaagtagcttataggtta 44984341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 460
Target Start/End: Original strand, 15804441 - 15804470
Alignment:
Q  431 ttttgataagctaattcaagtagcttatag 460  Q
    ||||||||||||||||||||||||||||||    
T  15804441 ttttgataagctaattcaagtagcttatag 15804470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 464
Target Start/End: Original strand, 40909949 - 40909982
Alignment:
Q  431 ttttgataagctaattcaagtagcttataggtta 464  Q
    ||||||||||||||||||||||| ||||||||||    
T  40909949 ttttgataagctaattcaagtagtttataggtta 40909982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 431 - 467
Target Start/End: Original strand, 31062980 - 31063016
Alignment:
Q  431 ttttgataagctaattcaagtagcttataggttaaaa 467  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  31062980 ttttgataagctatttcaagtagcttatagcttaaaa 31063016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 1415635 - 1415680
Alignment:
Q  301 gggtctgtttggctagacacatttttgaacttatagcttataagct 346  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||||    
T  1415635 gggtctgtttggcaagacatatttttgagcttatagcttataagct 1415680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 481
Target Start/End: Original strand, 10518256 - 10518316
Alignment:
Q  421 ttatagcatcttttgataagctaattcaagtagcttataggttaaaacttttagcttatca 481  Q
    ||||| ||| |||||||||||||||| ||||||||||||| ||||| ||| || |||||||    
T  10518256 ttataacattttttgataagctaatttaagtagcttatagcttaaagcttataacttatca 10518316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Original strand, 20004003 - 20004042
Alignment:
Q  421 ttatagcatcttttgataagctaattcaagtagcttatag 460  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  20004003 ttatagcgttttttgataagctaattcaagtagcttatag 20004042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 466
Target Start/End: Complemental strand, 20792005 - 20791970
Alignment:
Q  431 ttttgataagctaattcaagtagcttataggttaaa 466  Q
    |||||||||||||||||||||||||||||| |||||    
T  20792005 ttttgataagctaattcaagtagcttatagcttaaa 20791970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 460
Target Start/End: Complemental strand, 37131546 - 37131516
Alignment:
Q  430 cttttgataagctaattcaagtagcttatag 460  Q
    |||||||||||||||||||||||||||||||    
T  37131546 cttttgataagctaattcaagtagcttatag 37131516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 460
Target Start/End: Complemental strand, 15942522 - 15942493
Alignment:
Q  431 ttttgataagctaattcaagtagcttatag 460  Q
    ||||||||||||||||||||||||||||||    
T  15942522 ttttgataagctaattcaagtagcttatag 15942493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 42747517 - 42747571
Alignment:
Q  298 atagggtctgtttggctagacacatttttgaacttatagcttataagctggtatgat 354  Q
    |||||||||||||||  ||||||||||  || ||||||||||||||||| |||||||    
T  42747517 atagggtctgtttggtaagacacattt--gagcttatagcttataagctcgtatgat 42747571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 465
Target Start/End: Complemental strand, 28736251 - 28736207
Alignment:
Q  421 ttatagcatcttttgataagctaattcaagtagcttataggttaa 465  Q
    ||||||||| ||| |||||||||||||||||||| ||||| ||||    
T  28736251 ttatagcatttttagataagctaattcaagtagcgtatagcttaa 28736207  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 35058502 - 35058554
Alignment:
Q  301 gggtctgtttggctagacacatttttgaacttatagcttataagctggtatga 353  Q
    ||||||||||||  |||||||| ||||| |||||| |||||||||| ||||||    
T  35058502 gggtctgtttggtaagacacatgtttgagcttataacttataagctcgtatga 35058554  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 473
Target Start/End: Complemental strand, 35272667 - 35272615
Alignment:
Q  421 ttatagcatcttttgataagctaattcaagtagcttataggttaaaactttta 473  Q
    ||||||| | ||||||||||||||||| |||||||||| | ||| ||||||||    
T  35272667 ttatagcttgttttgataagctaattccagtagcttatggcttataactttta 35272615  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 482
Target Start/End: Complemental strand, 24432802 - 24432754
Alignment:
Q  434 tgataagctaattcaagtagcttataggttaaaacttttagcttatcat 482  Q
    ||||||||||||||||||||||||||  ||||||||| || ||||||||    
T  24432802 tgataagctaattcaagtagcttataacttaaaacttatatcttatcat 24432754  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 3836851 - 3836897
Alignment:
Q  300 agggtctgtttggctagacacatttttgaacttatagcttataagct 346  Q
    |||||||||||||  |||||||| ||||| |||||||||||||||||    
T  3836851 agggtctgtttggtaagacacatatttgatcttatagcttataagct 3836897  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 482
Target Start/End: Complemental strand, 12473167 - 12473126
Alignment:
Q  441 ctaattcaagtagcttataggttaaaacttttagcttatcat 482  Q
    |||||||||||||||||||| ||||| ||| |||||||||||    
T  12473167 ctaattcaagtagcttatagcttaaagcttgtagcttatcat 12473126  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 460
Target Start/End: Complemental strand, 20988861 - 20988825
Alignment:
Q  424 tagcatcttttgataagctaattcaagtagcttatag 460  Q
    |||||| ||||||||||||||||||||||||||||||    
T  20988861 tagcattttttgataagctaattcaagtagcttatag 20988825  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Original strand, 3535194 - 3535233
Alignment:
Q  421 ttatagcatcttttgataagctaattcaagtagcttatag 460  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  3535194 ttatagcgttttttgataagctaattcaagtagcttatag 3535233  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 473
Target Start/End: Original strand, 21501653 - 21501695
Alignment:
Q  431 ttttgataagctaattcaagtagcttataggttaaaactttta 473  Q
    |||||||||||||||||||||||||||||| ||| || |||||    
T  21501653 ttttgataagctaattcaagtagcttatagcttataattttta 21501695  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 460
Target Start/End: Complemental strand, 24418279 - 24418250
Alignment:
Q  431 ttttgataagctaattcaagtagcttatag 460  Q
    ||||||||||||||||||||||||||||||    
T  24418279 ttttgataagctaattcaagtagcttatag 24418250  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 460
Target Start/End: Original strand, 52831491 - 52831520
Alignment:
Q  431 ttttgataagctaattcaagtagcttatag 460  Q
    ||||||||||||||||||||||||||||||    
T  52831491 ttttgataagctaattcaagtagcttatag 52831520  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 22815227 - 22815188
Alignment:
Q  306 tgtttggctagacacatttttgaacttatagcttataagct 346  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  22815227 tgtttggctag-cacatttttgagcttatagcttataagct 22815188  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 37740540 - 37740590
Alignment:
Q  303 gtctgtttggctagacacatttttgaacttatagcttataagctggtatga 353  Q
    ||||||||||| | |||||||||||| ||||||||||||| ||| ||||||    
T  37740540 gtctgtttggcaaaacacatttttgagcttatagcttatacgctcgtatga 37740590  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 460
Target Start/End: Complemental strand, 339068 - 339039
Alignment:
Q  431 ttttgataagctaattcaagtagcttatag 460  Q
    ||||||||||||||||||||||||||||||    
T  339068 ttttgataagctaattcaagtagcttatag 339039  T

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