View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4878_high_3 (Length: 449)
Name: NF4878_high_3
Description: NF4878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4878_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 16 - 445
Target Start/End: Complemental strand, 26937074 - 26936643
Alignment:
| Q |
16 |
aatggctcaaccagagaatgaactagcatagttaactagaagaaatcaactgatttaaaaaatatccacaaatcctttttcatcattgataagttttgta |
115 |
Q |
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| T |
26937074 |
aatggctcaaccagagaatcaactagcatagttaactagaagaaatcaactaatttaaaaaatatccacaaatcctttttcatcattgataagttttgta |
26936975 |
T |
|
| Q |
116 |
taagctgaaaatatgcagcat--tttgtcaccatcaagaattttcaattacttggatgatctatgaatattggaaccaaccaaaactgtgtatacatgtt |
213 |
Q |
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| T |
26936974 |
taagctgaaaatatgcagcatattttgtcaccgtcaagaattttcaattacttggatgatctatgaatattggaaccaaccaaaactgtgtatacatgtt |
26936875 |
T |
|
| Q |
214 |
aaaataaatgatttctgtatctttgtctttatttgttgacagatgaataaaactgaacttaactttcttcaactgctcatgaatttctgcctccggaatc |
313 |
Q |
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|||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26936874 |
aaaataaatggtttctgtatctttttctttattttttgacagatgaataaaactgaacttaactttcttcaactgctcatgaatttctgcctccggaatc |
26936775 |
T |
|
| Q |
314 |
caatcgacgacttctccgtttgatcaaccagtagcaaaatccaccaacaagagtaagaattataagaccatcaaaaactcctactcctacaaatatccat |
413 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26936774 |
caatcgacgacttctccgtttgattaaccagtagcaaaatccaccaacaagagtaagaattataagaccatcaaaaactcctactcctacaaatatccat |
26936675 |
T |
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| Q |
414 |
tttttcaaattatgcctctcatgttttctacc |
445 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
26936674 |
tttttcaaattatgcctctcatgttttctacc |
26936643 |
T |
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