View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4878_low_1 (Length: 710)
Name: NF4878_low_1
Description: NF4878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4878_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 206 - 701
Target Start/End: Complemental strand, 42677514 - 42677019
Alignment:
| Q |
206 |
ttagacaaagctgtatgaattaacctccccttacaatatttttcaattgatggctagcgtggttcataatagaatcggtacaaacacttaaaaaacaaac |
305 |
Q |
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| T |
42677514 |
ttagacaaagctgtatgaattaacctccccttacaatatttttcaattgatggctagcgtggttcacaatagaatcggtacaaacacttaaaaaacaaac |
42677415 |
T |
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| Q |
306 |
atggcgtgaacatgttctgaaggtaccacgaaaacatgtagtatatatgtgttcacaaagcaaataattgtgcatagtatcggcaacaattttgctacct |
405 |
Q |
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| T |
42677414 |
atggcgtgaacatgttctgaaggtaccacgaaaacatgtagtatatatgtgttcaaaaagcaaataattgtgcatagtatcggcaacaattttgctacct |
42677315 |
T |
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| Q |
406 |
caggattcaaattctacgaaccaaaaatgtcttgattttctggtggaaattctcaatctcttgatggttccaaattgtccaaaataagcttccgccatct |
505 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42677314 |
caggattcaaattctatgaaccaaaaatgtcttgattttctggtggaaattctcaatctcttgatggttccaaattgtccaaaataagctttcgccatct |
42677215 |
T |
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| Q |
506 |
ccatctctttgaagccatgtggaatcaacccaatatacaaaacatgggaagtattctccaatggtttgcggctaggaccagcttccaacgacaaaaaatc |
605 |
Q |
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| T |
42677214 |
ccatctcttagaagccatgtggaatcaaaccaatatacaaaacatgggaagtattctccaatggtttgcgactaggaccagcttccaacgacaaaaaatc |
42677115 |
T |
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| Q |
606 |
agcaccatgctcaaatggaaaaaattaaatggcaatggctttataccacacgaaagagatctgattacactaaaacatattcgctttgattttctt |
701 |
Q |
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| T |
42677114 |
agcaccatgctcaaatggatagaattaaatggcaatggctttataccacacgaaagagatctgattacactaaaacatattcgctttgattttctt |
42677019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 354 - 445
Target Start/End: Complemental strand, 52835123 - 52835029
Alignment:
| Q |
354 |
gtgttcacaaagcaaataattgtgcatagtatcggcaacaa-ttttgctacctcag--gattcaaattctacgaaccaaaaatgtcttgattttc |
445 |
Q |
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||||||| | ||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| ||| | ||||||||||||||||| |
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| T |
52835123 |
gtgttcaaagagcaaataattgtgcatagtatcagcaacaatttttgctacctcaggagattcaaattctatgaagccaaaatgtcttgattttc |
52835029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 495
Target Start/End: Complemental strand, 52835009 - 52834967
Alignment:
| Q |
453 |
aattctcaatctcttgatggttccaaattgtccaaaataagct |
495 |
Q |
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| T |
52835009 |
aattctcaatctcttgacggtaccgaattgtccaaaataagct |
52834967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 312 - 398
Target Start/End: Original strand, 48968805 - 48968887
Alignment:
| Q |
312 |
tgaacatgttctgaaggtaccacgaaaacatgtagtatatatgtgttcacaaagcaaataattgtgcatagtatcggcaacaatttt |
398 |
Q |
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| T |
48968805 |
tgaacatgttctgaaggtaccacaaaaacctgtagtag----gtgttcaaaaagcaaataattgtgcatagtatcagcaacaatttt |
48968887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 449 - 495
Target Start/End: Original strand, 48969535 - 48969581
Alignment:
| Q |
449 |
tggaaattctcaatctcttgatggttccaaattgtccaaaataagct |
495 |
Q |
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| T |
48969535 |
tggaaattctcaatctcttgatggttccaaattgtccaaaataagct |
48969581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 500 - 572
Target Start/End: Original strand, 48969712 - 48969784
Alignment:
| Q |
500 |
ccatctccatctctttgaagccatgtggaatcaacccaatatacaaaacatgggaagtattctccaatggttt |
572 |
Q |
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| T |
48969712 |
ccatctccttctcatagaagccatgtggaatccgaccaatatacaaaacaggggaagaattctccaattgttt |
48969784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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