View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4878_low_12 (Length: 222)

Name: NF4878_low_12
Description: NF4878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4878_low_12
NF4878_low_12
[»] chr4 (1 HSPs)
chr4 (35-221)||(53350818-53351009)
[»] chr5 (13 HSPs)
chr5 (1-101)||(26032698-26032804)
chr5 (35-104)||(38181379-38181448)
chr5 (35-104)||(38189683-38189752)
chr5 (35-104)||(38216908-38216977)
chr5 (169-213)||(38456899-38456943)
chr5 (168-210)||(38171901-38171943)
chr5 (168-210)||(38181535-38181577)
chr5 (168-210)||(38189554-38189596)
chr5 (168-210)||(38208761-38208803)
chr5 (168-210)||(38216779-38216821)
chr5 (168-213)||(26032558-26032603)
chr5 (35-104)||(38456740-38456809)
chr5 (35-104)||(38208603-38208674)


Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 35 - 221
Target Start/End: Complemental strand, 53351009 - 53350818
Alignment:
Q  35 tgaaaaagggaagaaggcaatttcgttagaggacgatgttgaagaaaaccttgatgacttgatggatttgtgtcttttgattgatttcagttcatatgat 134  Q
    ||||||||| |||||| ||||||| ||  ||||||||||||||| ||||||||||||||||||||||  ||||||||||||||| ||||||| || | |     
T  53351009 tgaaaaaggaaagaagccaatttctttgaaggacgatgttgaagcaaaccttgatgacttgatggatccgtgtcttttgattgacttcagttgattttac 53350910  T
Q  135 aac-at----acagtaacttgcatgacaagcttccattcgatataaaaagcttatagtgtttgcaacacaacttttctgtatttagtgtttt 221  Q
    ||| ||    |||||||||||||||||||||| |||  |||| |||||||||||  ||||||||  | ||||||||| ||||||||| ||||    
T  53350909 aacgatgataacagtaacttgcatgacaagctcccacacgatgtaaaaagcttacggtgtttgcgtcgcaacttttcagtatttagtttttt 53350818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 26032804 - 26032698
Alignment:
Q  1 ctaggcatgtgcatttgtctgagaccaatttcgttga---aaaagggaagaaggcaatttcgttagaggacgatgttgaagaaaa---ccttgatgactt 94  Q
    |||||| |||| ||||||||||||| |||||||||||   ||||||||||||| | |||||||| |||||||||||||||| |||   ||||||||||||    
T  26032804 ctaggcgtgtgtatttgtctgagacaaatttcgttgatgaaaaagggaagaagcctatttcgttggaggacgatgttgaagcaaacctccttgatgactt 26032705  T
Q  95 gatggat 101  Q
     ||||||    
T  26032704 catggat 26032698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 38181379 - 38181448
Alignment:
Q  35 tgaaaaagggaagaaggcaatttcgttagaggacgatgttgaagaaaaccttgatgacttgatggatttg 104  Q
    |||||||||||||||| ||||||| || |||||||||||||||| |||||||||||| || |||||||||    
T  38181379 tgaaaaagggaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggatttg 38181448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 38189752 - 38189683
Alignment:
Q  35 tgaaaaagggaagaaggcaatttcgttagaggacgatgttgaagaaaaccttgatgacttgatggatttg 104  Q
    |||||||||||||||| ||||||| || |||||||||||||||| |||||||||||| || |||||||||    
T  38189752 tgaaaaagggaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggatttg 38189683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 38216977 - 38216908
Alignment:
Q  35 tgaaaaagggaagaaggcaatttcgttagaggacgatgttgaagaaaaccttgatgacttgatggatttg 104  Q
    |||||||||||||||| ||||||| || |||||||||||||||| |||||||||||| || |||||||||    
T  38216977 tgaaaaagggaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggatttg 38216908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 38456899 - 38456943
Alignment:
Q  169 gatataaaaagcttatagtgtttgcaacacaacttttctgtattt 213  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  38456899 gatataaaaagcttatattgtttgcaacacaacttttctgtattt 38456943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 38171943 - 38171901
Alignment:
Q  168 cgatataaaaagcttatagtgtttgcaacacaacttttctgta 210  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  38171943 cgatataaaaagcttatagtgtttgcaacacaatttttctgta 38171901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 38181535 - 38181577
Alignment:
Q  168 cgatataaaaagcttatagtgtttgcaacacaacttttctgta 210  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  38181535 cgatataaaaagcttatagtgtttgcaacacaatttttctgta 38181577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 38189596 - 38189554
Alignment:
Q  168 cgatataaaaagcttatagtgtttgcaacacaacttttctgta 210  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  38189596 cgatataaaaagcttatagtgtttgcaacacaatttttctgta 38189554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 38208761 - 38208803
Alignment:
Q  168 cgatataaaaagcttatagtgtttgcaacacaacttttctgta 210  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  38208761 cgatataaaaagcttatagtgtttgcaacacaatttttctgta 38208803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 38216821 - 38216779
Alignment:
Q  168 cgatataaaaagcttatagtgtttgcaacacaacttttctgta 210  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  38216821 cgatataaaaagcttatagtgtttgcaacacaatttttctgta 38216779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 26032603 - 26032558
Alignment:
Q  168 cgatataaaaagcttatagtgtttgcaacacaacttttctgtattt 213  Q
    |||||||||||||||||||||||||||||||||  |||||||||||    
T  26032603 cgatataaaaagcttatagtgtttgcaacacaatgtttctgtattt 26032558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 38456740 - 38456809
Alignment:
Q  35 tgaaaaagggaagaaggcaatttcgttagaggacgatgttgaagaaaaccttgatgacttgatggatttg 104  Q
    |||||| ||||||||| ||||||| || ||||||||| |||||| |||||||||||| || |||||||||    
T  38456740 tgaaaatgggaagaagccaatttcattggaggacgattttgaagcaaaccttgatgatttcatggatttg 38456809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 38208603 - 38208674
Alignment:
Q  35 tgaaaaagggaagaaggcaatttcgttagagga-cgat-gttgaagaaaaccttgatgacttgatggatttg 104  Q
    |||||||||||||||| ||||||| || ||||| |||| ||||||| |||||||||||| || |||||||||    
T  38208603 tgaaaaagggaagaagccaatttcattggaggaccgatcgttgaagcaaaccttgatgatttcatggatttg 38208674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University