View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4878_low_4 (Length: 432)
Name: NF4878_low_4
Description: NF4878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4878_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Original strand, 6009894 - 6010292
Alignment:
| Q |
16 |
tataacaccgacacaacactaatacatgtaattacatttaattttgttagtgcttatagatgtgatttgttaagtgtgaaattaaatgttgtgacagggg |
115 |
Q |
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| T |
6009894 |
tataacactgacacaagactaatacacgcaattgcatttaattttgttagtgcttatagatgtgatttgttaagtgtgaaattaagtgttgtgacagggg |
6009993 |
T |
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| Q |
116 |
tggggaagaagattatgagcgatgaaactggattgaaggtggaagaacaaagagtgatatacaaaggaaaggaacgtgaaaatggagagtatttggatgt |
215 |
Q |
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| T |
6009994 |
tggtgaagaagattatgagcgatgaaactggattgaaggtggaagaacaaagagtgatatacaaaggaaaagaacgtgaaaatggagagtttttggatgt |
6010093 |
T |
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| Q |
216 |
atgtggagtcaaagacaagtcaaagttggtgttgattcaagatgcttcaagtattgagagaaggttcatccagatgcgtatcaatgctaagatccaaact |
315 |
Q |
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| T |
6010094 |
atgtggagtcaaagacaagtcaaagttggtgttgattcaagatgcttcaagtattgagagaaggttcatccagatgcgtatcaatgctaagatccaaact |
6010193 |
T |
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| Q |
316 |
gcaaatcgtgccatcaataatgtgtctctccaacttgatcagctagcagaacaagtatctgcaattgaaaaatcaatttctgatggagttaaagtacca |
414 |
Q |
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| T |
6010194 |
gcaaatcgtgccataaataatgtgtctctccaacttgatcagctagcagaacaagtatctgcaattgaaaaatcaatttctgatggagttaaagtacca |
6010292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 12925303 - 12925267
Alignment:
| Q |
24 |
cgacacaacactaatacatgtaattacatttaatttt |
60 |
Q |
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| T |
12925303 |
cgacacaacactaatacatgtaattaagtttaatttt |
12925267 |
T |
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