View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4878_low_5 (Length: 428)
Name: NF4878_low_5
Description: NF4878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4878_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 46 - 420
Target Start/End: Original strand, 38863485 - 38863858
Alignment:
| Q |
46 |
gccaaaatgcataaatgcacgtcgatggaacttgacttgacttgactttgcttcattcaattaggtagggatgagcaaattttaatttaagtaaataaat |
145 |
Q |
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| T |
38863485 |
gccaaaatgcataaatgcacgtcgatggaacttgacttgacttgactttgcttcattcaattaggtagggatgagcaaattttaatttaagcaaataaat |
38863584 |
T |
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| Q |
146 |
cagaattatgctgaaataatctaaattaatgagttgttgatgnnnnnnnnntctaaatcaccccttttattctattttctcnnnnnnngaatatctaata |
245 |
Q |
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| T |
38863585 |
cagaattatgctgaaataatctaaattaatgagttgttgatgaaaaaaaa-tctaaaacaccccttctattctattttctctctttttgaatatttaata |
38863683 |
T |
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| Q |
246 |
taaattttccaccgacagcagttttttcatatacattgcatcaatcggtaatcaaaccactaaccacgtacttaagaaatataagttctttaccatttgg |
345 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38863684 |
taaagtttccaccgacagcagttttttcatatacattgcatcaatcagtaatcaaatcactaaccacatacttaagaaatataagttctttaccatttgg |
38863783 |
T |
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| Q |
346 |
atcaattcactgttcgtctctacattctattataagtattatatctatgaaaaaccatcctaaaatgagtattat |
420 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38863784 |
atcaattcactgttggtctctacattctattataagtattatatctatgaaaaaccatcctaaaatgactattat |
38863858 |
T |
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