View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4878_low_8 (Length: 284)
Name: NF4878_low_8
Description: NF4878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4878_low_8 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 187 - 284
Target Start/End: Original strand, 53350590 - 53350685
Alignment:
| Q |
187 |
atacatcagttttgtcatattctgtcctatatatagttacctccaaacaaatgttagaaggataaccatgatttttctctcagccacagttctaagac |
284 |
Q |
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| T |
53350590 |
atacatcagttttgtcacactctgtcctgtata--gttacctccaaaataatgttagaaggataaccatgattttcctctcagccacagttctaagac |
53350685 |
T |
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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 53350424 - 53350495
Alignment:
| Q |
92 |
agctaggaacttttttcttggaggggctgaaaaatatacaatatgtgaacaataatttttcaaatttgagtaatt |
166 |
Q |
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| T |
53350424 |
agctaggaactttttccttggaggggctgaaaaatatacaatatgtgaac---aatttttcaaatttgagtaatt |
53350495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 53350291 - 53350372
Alignment:
| Q |
12 |
acagacacaatgagcagggcaaggactcaaaacaaaaacaagagttcaaagagaacaatggcaaaagctaagaacatgaaag |
93 |
Q |
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| T |
53350291 |
acagacacaacgagcagaggagggactcaaaacagaaacaagagttcaaagagaacaatagcaaaatgcaagaacatgaaag |
53350372 |
T |
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